Array 1 716798-720272 **** Predicted by CRISPRDetect 2.4 *** >NC_009012.1 Acetivibrio thermocellus ATCC 27405, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================================================================================== ================== 716798 30 100.0 37 .............................. TAAAACAAAGGAGAATTGTAAATGGAAGAGTATTTGA 716865 30 100.0 36 .............................. TCGAGATTTTGGAACTTTGTTTCGCCATTCGTGTCT 716931 30 100.0 37 .............................. TCCGCAAAAGAGAGAATCAGAGCTGCCGAACTTTTGG 716998 30 100.0 35 .............................. CGTTTCATGGATTTGATAAGTTCAAGCTCTATCTC 717063 30 100.0 36 .............................. GATTCAGAATTGAACGAGTACGTCAAAAGCGTTTTA 717129 30 100.0 37 .............................. TAGATGAATCAAATAGTTCTACTGGACTTGGAGATAC 717196 30 100.0 36 .............................. AAATAAATCTAAAGGGTATGCCACGGAAACGTTATA 717262 30 100.0 36 .............................. CCCAGTATGGAATGGCGGTGGAACTGTCCGGCTGGC 717328 30 100.0 37 .............................. GCTCTAACAGTAATTCAATTATTTTTGTATTCATTTG 717395 30 100.0 37 .............................. CGGGCCGCGCCTATTTGCGTGGGAACCCTTATAATGG 717462 30 100.0 36 .............................. CGGTACTGCTGTGGTTATCGACGAGATTCAGACTTG 717528 30 100.0 36 .............................. ACGGAAGAGAAAAAACAGCAGATAATACAAAGCGTA 717594 30 100.0 37 .............................. TCATTTTTTTCACGACTATACAATATACCATTTGAAT 717661 30 100.0 35 .............................. TGGCTGAAAGGTTATAGGTTGAAAGGAAAAGTCCC 717726 30 100.0 36 .............................. TCTCGCCTTTTGGCGGTTCGACTTTTGCCGCTTTCA 717792 30 100.0 38 .............................. GAATTGCCATTAAGTCTTTGGTTTCTTGTCTTGTCATG 717860 30 100.0 39 .............................. TACAGCCTCCTTCATGCTTTCTCCTTTGTCAGCTAACTC 717929 30 100.0 36 .............................. AAGGCTGGGGTGAGTGGGTTGAAGTAACTGAAGGTG 717995 30 100.0 35 .............................. TTATTTTTAGTACATCATTATTTGTGATTATTCTA 718060 30 100.0 38 .............................. TTTGCCCTCTCCTTTCTTTTCTTTTGTTTGTTTTAGCG 718128 30 100.0 36 .............................. TCTACCTGTTGAGCTTCTGCCACTTGTTCTAATGTA 718194 30 100.0 37 .............................. TTGTTCAGCCTCCTTTCTAAGCAATGTAATAATAAAA 718261 30 100.0 38 .............................. CTTCATAATCTTTAGGGGTTCTTTTCTTCATATTGTCA 718329 30 100.0 38 .............................. CAACACTCCTTTATTATTATTATTTTTCCTGCCTTTGC 718397 30 100.0 36 .............................. TAGGCCAGCTCGAAAAAGCCGGCGCTAACACCGAAG 718463 30 100.0 37 .............................. ATGTGCCTCCGCCACGTCTTGTTATAATTGCTTCTCC 718530 30 100.0 36 .............................. CATTGTTGCCTAGTTGTTTTTTTGGTTTTACTTCTC 718596 30 100.0 38 .............................. ATTGCCGGCGGCAAGTCTGAAGCGCCAAGAATTGACCG 718664 30 100.0 36 .............................. CCGACTGTTCGACGTAGACGTCGACAGGAGGAAAGA 718730 30 100.0 36 .............................. CCTCAATTTCATTGTATCACCGGAGCAGTGGAGCGT 718796 30 100.0 36 .............................. CAGAAAACTTGTGAACTACCGCCACTTATAGAAGTG 718862 30 100.0 37 .............................. TTGTTCTGCAACTTATGTAAACATGTAGTCGAAATCA 718929 30 100.0 36 .............................. TCTATCATGTAAACGGTAATGCATCCCATACACGCT 718995 30 100.0 36 .............................. CCTCAATTTCATTGTATCACCGGAGCAGTGGAGCGT 719061 30 100.0 36 .............................. CCCCATTCAAGAATATTCACTGCTATTCACCTTCTT 719127 30 100.0 36 .............................. ATAATTCACATAATGCAAATGTTGCACAACTTGTAT 719193 30 100.0 36 .............................. CCGATAAGCTAAATGTCAACGCTGAGATGATGGTAA 719259 30 100.0 37 .............................. AATCCCGCCCATTCGGCTGCCAAATCAATTCCGCCTA 719326 30 100.0 37 .............................. TATTGTGCCAAGTGTCAATACTTTTGGTACAATATTT 719393 30 100.0 36 .............................. CAAATAGGTCTGTATACATTCTATTTTGATACAAGT 719459 30 100.0 36 .............................. TTGTGGCGACAGAACGGCGGGAATAGCAGTGTTGCA 719525 30 100.0 37 .............................. ATGTAACCAGCCCATGTCATTTCTGCCTTTTGCTCCA 719592 30 100.0 37 .............................. TGAGGATAAAATACAGCAGTACCTTGAACTAGATGAG 719659 30 100.0 37 .............................. ATAAAACTATTTATTTTTTGTTCACAATTGTGTACAA 719726 30 100.0 36 .............................. AAAAATGGCGAGCAGGCAGGGGGTTAGGACCCACCC 719792 30 96.7 38 .............................T CGATTTTGCAGACAGTCAAGAAGATGCAGAACGTAAAC 719860 30 96.7 38 .............................T AGCAAATATTTGATTCAAAAATAGAGCTAGTAAAGAAT 719928 30 96.7 39 .............................T TTTTTCAAACTTGCAGGGCTAGGCAGGAATCGAACCTGC 719997 30 100.0 16 .............................. TGACAAATTGATGCAC Deletion [720043] 720043 30 100.0 39 .............................. TCCCAAGTATCTGTATCTAACTGATATCCTGCAGGACCT 720112 30 86.7 100 ..G................A........TT AAGTATCATCTATATAATCAAATCTATTATAACCAGTTTTTATCCTAGATGTAACAAAATGAGACTTAATAACTATGATGCCTTTAGCAATTTCACTTCT A [720137] 720243 30 73.3 0 ....C.G.T.C..T.G...T.........T | ========== ====== ====== ====== ============================== ==================================================================================================== ================== 52 30 99.0 38 GTTTGTATCGTACCTATGAGGAATTGAAAC # Left flank : TAAAAAACGGTGTAACACTTTTTTAATTGTTTGAATACTATGATACCGTGAAGCAAAACAAAATAGGAAAGGATGAGAGGTATGGAGGAGAATAGAGGTTTTGGCTGCTTTTATGGTAATGACATTATTTGGTTGATAATTATAATTTTGTTTATTCTGTGCTTGTGTCCGGGAATTTTCGGCGGTTTTGGCGGATGCGGCTATAAGAATTGACCGACTGCATGTACATAAGAATCTAAAGAGGGGAGGTAATTGCCTCCCCTTTTTGTTATAATAGGGATATGCGGGGAATTAACTGAGTTGATGGGAGTAATTTTATTTATAAGTTTATGGTTTGTCGATGTGGAGTAGTGTAAAAAACCCGGGAGATCGACAAAGTTTGTTGATGTCTTTTAAATGCAGGATTATGAATAGTTTGAGTGATTTTTTTTATTTTTGTTATTGATTTTTATTTTATATGTTATTAAAATAAAAAGTAGGAATTATGCAGGTTCTATGGG # Right flank : TAGGCAGTAAATCTAATTTTATTAATATACAATAATTGCCTTTCTTGTACCTACAATAAAATAGGACAAAGTTTTGCCTTTTGTCTTCATATACTTTATATAATGCTCCCCATTGTCAAGACAGTTTTTTAGCTTTTCTAAGTTAGCTCTCCTTTCTTAATTTTGTATAATCTTTACAACTGTGCACTCTGTTGGAGGATGTCAAGGGCGAGCGTAAGCGAGTTCATCTTGACCCTTGACATCCTTTGGACATATATCCTTTTGCTTTCCGGTCTGTTATGACAGACCGGCTGCCTTCCGGTGAGGACGGGGTTTGGGGCGGAGCCCCATAATTCTATACAACTGCCAGTAGCTGGTCATATCCTCCAAAGTAATACTCTGCCGGTGTTTTGTAATCCAATGACTGGTGCGGTCTCCTATGGTTATAGTGCTCCACATATTCCTTTGTGATTTGTCTAAGTTGTTGTACCGTTTCGCACTCTTCAAGATAAAGTTTCTCC # Questionable array : NO Score: 9.08 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:-0.12, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 1712609-1719089 **** Predicted by CRISPRDetect 2.4 *** >NC_009012.1 Acetivibrio thermocellus ATCC 27405, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 1712609 30 100.0 34 .............................. CTACATTGAAACTGGCAATGCTACAGAAGCAGCA 1712673 30 100.0 40 .............................. CTATCTTTGTCAAACAGCAACCACATGAAAGCGTCGGCAA 1712743 30 100.0 39 .............................. AATCTACTATAAGTCAGTATGAAACATGCAAAAGAGAAC 1712812 30 100.0 36 .............................. GGCGGTGTTGGTGCACATACAAAACTTCCAAGCACA 1712878 30 100.0 38 .............................. CACCTCATATGTTCAGGCATACATTTGTTTATATGGCA 1712946 30 100.0 36 .............................. TCTTCTTAGCCTGCCACTGCTCCCATCTGAAACCTT 1713012 30 100.0 37 .............................. TAAAAATATCTTCGGTAATTGCATCCGTTTTAATTTC 1713079 30 100.0 38 .............................. ATTTTAAAAAACCCATATTATATCCTCCTTTAGTTTTC 1713147 30 100.0 37 .............................. TACTTTGCTTAAGTTTTTCATAATTATCAGATTTATC 1713214 30 100.0 36 .............................. TTGTAACCGAGAATGTCCCTCCAATGTTCTAACTTT 1713280 30 100.0 37 .............................. GTGATTGCAGACCCTGTTATTATTCAAGCCGCTGAAA 1713347 30 100.0 38 .............................. AAGCCGGATTTAGTGAGGCTTTTGGTGAGTCTAATGTC 1713415 30 100.0 39 .............................. ATAAACCTCAGACATATGTCACAGCAAAAGGCGTTTCCT 1713484 30 100.0 36 .............................. GCCCAAAAGGTAGCTGTAGCTGTTGCTGGCGCAATT 1713550 30 100.0 39 .............................. TTTTCCCCAGGTGACTAATTTCAGGAACTTTTGTTAATG 1713619 30 100.0 35 .............................. TCTTGATAAAATAAACAATTTTTCTGTTGTAGATA 1713684 30 100.0 36 .............................. TGATGTGACTGTTGTGGTTCTCTACTGCTGCGCCTT 1713750 30 100.0 37 .............................. ATTCAAGTCTCTTTTTTTTGGTGTTGTGCTTGCGAGC 1713817 30 100.0 39 .............................. TTCTATGGTCGGAGTGACTGGATTTGAACCAGCGACCTC 1713886 30 100.0 37 .............................. AAGGCGAAATAGGTTATAGAAAAATAAGTAATATAAC 1713953 30 100.0 38 .............................. AACAGGAGCAGGAAGACAATGAAGCCATGCGCCAGGGC 1714021 30 100.0 37 .............................. CCATATCACCAAGTAAATTTGTTTCAACTCCGGCACC 1714088 30 100.0 37 .............................. AGAGAAGGGTTTGTAGAAGACGACTTTTTTACTGTCA 1714155 30 100.0 36 .............................. CCGACGCTGACTTTGCCGAGTGTGAAGAATGGCTGA 1714221 30 100.0 38 .............................. CTTCACGGGAAAGGTTCTTGCTGTAATATTCGGCCATA 1714289 30 100.0 36 .............................. AGGAACAGGACTTCATACAACGTCACCGTTGAAGTG 1714355 30 100.0 37 .............................. TAAGCCATCGGGCATGACGAACCATTATCGCATAAAC 1714422 30 100.0 36 .............................. ATCTCCAATCCACCTCCGGTATGCGGCTGCGTCTGC 1714488 30 100.0 40 .............................. TAAAGCTCTGGTCGGTAAATGTGCGGATTGGTCGCTCTGC 1714558 30 100.0 37 .............................. AACTCACCTTCTCCCCATTTACCGGACAAACTAACCG 1714625 30 100.0 38 .............................. GGTCTAGCTGTGTACCAGAAATACTGGCACAGCTTTTC 1714693 30 100.0 36 .............................. GGACTGGCTGCAACCTTGAACATAAACTTGAGTATG 1714759 30 100.0 35 .............................. GAGAGGCCTTTTGGCCGGAGGAAGTTGTGGAGGTG 1714824 30 100.0 38 .............................. TCGCCATATCTACCACATAACCAGCGGTTGTTGCCAAT 1714892 30 100.0 37 .............................. ATAGCATTTCTTGAAAAAAACCGTAAAGAGTGGGGAT 1714959 30 100.0 39 .............................. TTTTTTTTGCAATTCCTTGTAACCCTGCTTTGCTACTCA 1715028 30 100.0 40 .............................. TACCTTTATTAGTCGATACAACACTTAAAGTCTATGACAA 1715098 30 100.0 36 .............................. CATACAGCGATGGTAGAAAGGTGAATATTGCTTCCT 1715164 30 100.0 39 .............................. TTGCCGCACTGCCCAAAACCAGCCCAATTTTTGAACCCA 1715233 30 100.0 41 .............................. TTCGACGTAGAAAATGCAATATCTATCGGGGAATGGTACTT 1715304 30 100.0 37 .............................. CCGAACATTTTATGCTCGTAGGGTACATCTTCGCAGA 1715371 30 100.0 37 .............................. CACGGCAGCACAACCAGCCGCACGTCTGCTTTGGCTT 1715438 30 100.0 35 .............................. CCGTTTCCCACATCTGATTGAGTTGTTTGTTGATA 1715503 30 100.0 37 .............................. TGCAATGATTTCGAATTCTTTGTAACATTGACTTTGG 1715570 30 100.0 36 .............................. AACCATAAAAAAGTAAACTGAACCATAAATGATACA 1715636 30 100.0 37 .............................. TGCCCCATTCTTTTCTTCGCTCTCCTTCGCCCATTAG 1715703 30 100.0 39 .............................. ACTTTTTGTCTTCACCTACCATGTCCATATTCGTCATAA 1715772 30 100.0 38 .............................. CTTTTATAAATTGAAAAGGAGGATAAGTATGTCAAACA 1715840 30 100.0 36 .............................. TACCATCTGAGGGCTATTTTGAAAGGTTCGTCAGTG 1715906 30 100.0 38 .............................. TCGGTATGCACAAAGAAGTACATACCGCAATATCTCTC 1715974 30 100.0 35 .............................. GCTGCCATTTTGACAATGGTGTTCTGCTGATCTGC 1716039 30 100.0 35 .............................. TCTCGCTCGAATAAAATTGGTACATCATATTTTTC 1716104 30 100.0 39 .............................. AATAAAAAATTTAGCATACTTTATATTGACCTTGAAGCG 1716173 30 100.0 40 .............................. TAGACATGGATTATGTGAACGTTGTGGCAGACCGGGAAAG 1716243 30 100.0 36 .............................. GACTAAGTCCTGCATCAGATGGCAATGTCGGTTCAG 1716309 30 100.0 36 .............................. AAGAAAACTGACAATGCAGAAGCACAAAGAGAAAAG 1716375 30 100.0 36 .............................. TTCACCTCCTTTTTTCATGAACTTTGGTCCTCCAAG 1716441 30 100.0 38 .............................. ATCATATATGATTCATGCAATGGATGTCAATATGGATG 1716509 30 100.0 37 .............................. GGTTTATAGGCTTTTAGTTCTCCGCTGTGTATCGCTC 1716576 30 100.0 38 .............................. CCGGCTTCACCTATCATCGCGAGAGTCGGAGCGTCTAC 1716644 30 100.0 36 .............................. CCTGAAAATCTTCATTCAATGCGGCTATGCCACTGC 1716710 30 100.0 36 .............................. AATAAATTTTCCTTTTCCATTTATTTACCTCCTTTT 1716776 30 100.0 39 .............................. TCAAGCATTTCTTTCGGTAATGGTTCGCCGAAATCAATC 1716845 30 100.0 36 .............................. ATTTTCCTCCTTTATATGTATAAAAGACCTTTATAA 1716911 30 100.0 40 .............................. GCCATATATACACCCCCTACAGGTAGCTTGGGGCAAACTC 1716981 30 100.0 36 .............................. ATCTAAACGAAGAACAATTGCAAAAGCTAAATGACT 1717047 30 100.0 40 .............................. CATTGAAACCGAATGGGTTGAAGAAGGCGGTTTCTTTAGA 1717117 30 100.0 38 .............................. TACTATCTGTAAAATACTTGTAGCCTTGTCTTTTAATT 1717185 30 100.0 37 .............................. CCAATCCATTCTTTCCGCATCTTGTACTGCTGATACC 1717252 30 100.0 36 .............................. TTTGTATAAAGTGAGGTAAATAGTAAATATATATGC 1717318 30 100.0 39 .............................. AAATCAAAGAATCGGCAAAAGGAAAGACATACGAAATTG 1717387 30 100.0 37 .............................. TGCCTGCAATGTTCTCGATGGCATTGTCGAAGATGAG 1717454 30 100.0 37 .............................. TCCTCCCCTTGCCATGTTATGGTTTCGCCCACTCTTT 1717521 30 100.0 36 .............................. TCACCGTTAGGAAAGTTGATAGTGAACACGCTGTTA 1717587 30 100.0 36 .............................. TACAATATACACAAGCAGAATTCTTACAAATAATAA 1717653 30 100.0 38 .............................. CAAAAAGGAGGAGTAGTTCGTTTTGAGGAAATAGACGC 1717721 30 100.0 37 .............................. AGTGTTCTATATGTATTTGCTTTTCCTAAGCTTTTTG 1717788 30 96.7 36 ....................A......... TTTGTATAAAGTGAGGTAAATAGTAAATATATATGC 1717854 30 100.0 40 .............................. CGCTTTTTGCTACTTTGATTTACGCCATTTATTATTCAAT 1717924 30 100.0 39 .............................. TGAACTGCACCTATCCGCCAGTTTCCAGTCATACTGGAT 1717993 30 100.0 38 .............................. TGATTTTTAATGTATTGTAATATTTCCATTTCCTTTTT 1718061 30 100.0 38 .............................. TGATTTTTAATGTATTGTAATATTTCCATTTCCTTTTT 1718129 30 100.0 36 .............................. GAGCCGGACGTGTGAAAAACTATATCCCGGAAGATC 1718195 30 100.0 37 .............................. TAATTAATTAGCTTAAATAAGCTATAATTAATATTGA 1718262 30 100.0 36 .............................. AAATAAAATTGTAAGAATGAGTTAAGGGGTTCAAAA 1718328 30 100.0 39 .............................. TTTCCAGGCTCAAAAATAAACCTAATCATTGTTAAAACC 1718397 30 100.0 36 .............................. TACGGACTTGCAACCGTCTATAACTTGTTGTTATAG 1718463 30 100.0 36 .............................. AATCAATTTTGCTTTTAAATAGAGTTTAATGTATAC 1718529 30 100.0 37 .............................. GCATGTTTTAAACTGTCAAGTATTTTTACTTTACAGA 1718596 30 100.0 36 .............................. CGGTGGATTAAATGAGCTTTATAATCTGCTGGATAA 1718662 30 100.0 36 .............................. ATCAAACCCTGATAAATAGACGGCTAGATGCCATTT 1718728 30 100.0 36 .............................. TACTTGAGTCTGTCCTTGAAGGCATGGCTGAATACT 1718794 30 100.0 36 .............................. TATAGCAAAGGACAACGAAGTAAAAGAAAACTGGAA 1718860 30 100.0 36 .............................. TCAAAAAACACTGCGTAACTCATTATGCATAACTCC 1718926 30 100.0 37 .............................. GCATCTGTCAATTTATCACGGATTGCAGTATCGATTT 1718993 30 100.0 37 .............................. GTGAATTCCGATGCTGTTTCCCTTTCGGGTAAGTTTT 1719060 30 93.3 0 ...........G.............A.... | ========== ====== ====== ====== ============================== ========================================= ================== 97 30 99.9 37 GTTTTTATCGTACCTATGAGGAATTGAAAC # Left flank : CCCCCTTTGCAAAAGTTGGAGCCGCTTGTGTGTAAGTTTTGGGCATTGAAAGAAATGTGACAGACAGGATGAGGATAAAGATAACAGTAAGTTTTGTAATTTTCGATAACATAGAGCCCCCCTATATTTACATCTTTTGATTTTTGGATTATCATATGTACAAATTTATTGTATCATAAATTGGAGGTTCTATAAATTGTATGTAATATAAACAAAAGAAATAATTATTTGATTGTGTGACTGTATTTAGATGCTGTTGGCTCATAAGTTCCTATTGATATCAAGTATTCAAACTTTCTGCCTGGAGATTTTGCTGTTGTACATGGTTTTTATGTTCGTCGATGTGGAGTAGTGCAAAAAAGCCGGGGGATCGACAAAATTTATTAATGTGCCTCAAATGCTGATTTATAGGTCTCTTGAGAGAGTTTTTTTGTTCTGATTGTTGATTTTTGTTTTATATAGAGTTAAAATATAAAGCAGAAGTTTAGCGAGTTCTATGG # Right flank : CACAATAGATACCGTCCCCGTGCTAATTTCATCATAGTTTTGTTGTGCCTATAATATAAATTGAAATTAATGCAAATATTGACATATCCTATAACTATTTATTTTTTCATGCCTATAAACTAAATCAATAACATTATAGGTACTCCGAAAAAAAATCTATTGACTTTTTGATATCCCAATGTTATCCTCACATTAGCCCAAAAAATCTTTGAAAGAAGGTGCTCCAACATTTACGCTCTTTTTATAGTGTTAAACGAAGTTGATTATCTTGATGATATTCTGGCCAAATTTGTTGACGTGGGAGTAAGCGGTGCAACAATTTTGCACAGCCAGGGAATGGCAAGCGCCATCGTCAACAGTGAAAATAACAAAATCTCACTCTTTAGCGCTTTAAAAAGCATTATAGAAAATATTCGTCCATATAACAAAACCATCTTTACAGTTTTGGAAAGCGAAGAATTGGTGGAAAAAGCCGTATCCGCCGTTCAAAGTGTGATAGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 2741082-2729744 **** Predicted by CRISPRDetect 2.4 *** >NC_009012.1 Acetivibrio thermocellus ATCC 27405, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 2741081 30 100.0 39 .............................. CATCATGCATTGGCGCTGGCAGCATCAAGTTTGTCTTCC 2741012 30 100.0 37 .............................. TTCAAGCCGCTGAAAGAAAAAAAGTTAGACCACTCTA 2740945 30 100.0 37 .............................. AAGAGTTTGAAGCGTGCAAGCTTGAATTTGCTGTTGA 2740878 30 100.0 35 .............................. TTTGCAGCTTCGTTTTTGCAAGTTCTACTGCTGTC 2740813 30 100.0 38 .............................. AGGAAGCCTTTTGGCCGGAGGAAGTTGTGAAAGATAAG 2740745 30 100.0 36 .............................. CGAAAACAATCTACCGGTTGATAATAAGCCGGACCC 2740679 30 100.0 37 .............................. TTGGGGCATTGGTATTTGGCGGAATCCCTGCGTTTGC 2740612 30 100.0 38 .............................. TGCACAATCCCATATTTTGCATACAAGTCTATTGCTTC 2740544 30 100.0 36 .............................. TTCGGTTCATTGGCACTGGGAATCCCAGCATATTTG 2740478 30 100.0 39 .............................. AACTATAACGGCACAACTTATGTTCCTCTTCGTGCTATT 2740409 30 100.0 37 .............................. ATATATTGGCTGAGCAAGAAAAGAAGTTGCTTTCGAT 2740342 30 100.0 35 .............................. ATTACGAAGCATTTATAGAGAGTTATGCTAATACA 2740277 30 100.0 39 .............................. ATCTCAGCTTCTCTTTTTGCTCTTTCGTAAGCGTCGCCA 2740208 30 100.0 36 .............................. TTTCTGAATTCGCTGGAAATTTGTCCGTCGTACGAA 2740142 30 100.0 38 .............................. TGCCCCATTCTTTTCTTCGCTCTCCTTCGCCCATTAGC 2740074 30 100.0 37 .............................. ACTAAGAAAATAGCAAGAAGACTCCCACCTCTTTAGG 2740007 30 100.0 36 .............................. GGATCGTTGTTTGCTCCTCCGGATTTTGTCTTCAGA 2739941 30 100.0 39 .............................. CTACATTTGCAGGCAATTTTTCAATTCTCTATCTAATGG 2739872 30 100.0 37 .............................. TCTTCTGCTGTCTCATCCCATATTTTTTGACCTTCTT 2739805 30 100.0 37 .............................. ACCTCTTGCTTCGTAACGAATGTAACACTAGAACCAG 2739738 30 100.0 37 .............................. CCCAAACTTTCAATACTGGCTAAAATATCACCAAACC 2739671 30 100.0 37 .............................. TTTTGCAATGTTCTGCTACATAATCATATACAATTTC 2739604 30 100.0 36 .............................. GCATAATTCCTGTACCGGAAACGGTAGAAATTAGCT 2739538 30 100.0 35 .............................. CCATAAAAATCACAAGTGTAGTCAGGCCAGCGTCC 2739473 30 100.0 39 .............................. TCTACTATTTGAGCTGGTAATCCGCTATGAATCTTACGT 2739404 30 100.0 38 .............................. GCTGTTTTCTCGCTATAACCAGCCCTTCTTGCTGCTTC 2739336 30 100.0 37 .............................. TTTCTGAATTCGCTGGAAATTCTTCCGTCGTACGAAA 2739269 30 100.0 40 .............................. AAGGCTCACGCAGATGCTATAAGAACAGAAATAGAACAGC 2739199 30 100.0 39 .............................. TCCAAAATTATTACGCAGATGGACAAGCTTGAAAACGAA 2739130 30 100.0 39 .............................. TGAAACCTTTGTGTAATCGTCCAGTGATACAGTTAGGAA 2739061 30 100.0 36 .............................. TTGATTTCAATATCAAACTGTATAAACCTGCTTCGT 2738995 30 100.0 36 .............................. TACTTGAGTCTGTAGAAGGTACTGCTGCCCAAAACC 2738929 30 100.0 38 .............................. GGCAAGAAGTAGTAGAAGGTGTGAACCCACCCTATCGA 2738861 30 100.0 37 .............................. TGTTTTTCAATGCTATTTGTTCACCGATTGAATCCAC 2738794 30 100.0 37 .............................. CTGGATTGCGTAGAGATTTGTACTTTTGAATTTTAAG 2738727 30 100.0 36 .............................. TTCTTTTTGAAGTTCTTTAAGTTTGCTTTGCCATTC 2738661 30 100.0 37 .............................. AGAAATAGAATTTGGTATAGAGGAGACCCATCAGAGC 2738594 30 100.0 37 .............................. CATTTTGACCTAGCTTCTTTGGTTTTACTTCTCTAGC 2738527 30 100.0 37 .............................. ATAGGTGAGTCAGATGTAAAAAAACAGGGGAGGTAAT 2738460 30 100.0 36 .............................. TTGTCAACTAAGCATGCGAACTGCTCCGGGCCATTG 2738394 30 100.0 37 .............................. TGTTCCTTTGTCAAATAAAGCTATATACTATCTAAAA 2738327 30 100.0 36 .............................. CGCCAAGTCTCCAAAGGAGCTACAGGAAAAAGTAAA 2738261 30 100.0 38 .............................. TGAAAACAACTTGCCAATTGATAATAAGCCAGACCCAC 2738193 30 100.0 40 .............................. CAAATAACAAATAGTAAATTGACCGTAGCAGAATGGTTTG 2738123 30 100.0 37 .............................. CGTCCACGTCGAATAGTCGGTAATCCATCAGCACCGA 2738056 30 100.0 36 .............................. AATAATTCTGCTATTCCAGTAATTTGTTTAAGTCGG 2737990 30 100.0 38 .............................. GACAGACAGATGAATATGACGGAACCGTTTTTTGTGTG 2737922 30 100.0 37 .............................. AAGATAAGGCTAACAAAAAGCTATTGTGGGAAATTTT 2737855 30 100.0 39 .............................. ATTGCTTCGTTGATTCAGGAAGCATAGCATATTCTTTTT 2737786 30 100.0 38 .............................. TACCGAATCGCGCTTCTATGAGTTGGACCTTGTCGTCC 2737718 30 100.0 36 .............................. ATGCACTTGATGAAGTAATATCCCAATGGATAGATG 2737652 30 100.0 37 .............................. CGTTCGATCACGATGTAGTCTTCACCCAGAAGAATCA 2737585 30 100.0 36 .............................. TATTGCCAGTGATCACCATAGTCGGCGGAATGCTGG 2737519 30 100.0 38 .............................. ACGGGAACCTATTCTGCACGATCAGCATTCGCGACAAA 2737451 30 100.0 36 .............................. CAGCCTGGAACATTCCTGTTTCAGCGTCCTTCATCA 2737385 30 100.0 36 .............................. CATTCGGTACAAGAAAAATCTTATTGGCATTACAAA 2737319 30 100.0 33 .............................. TTGTAGATTTCAGCCTGCTCCTTCTTCAGGCGT 2737256 30 100.0 36 .............................. TCGCTGTGCGTGAATTTCACTTTGTGTGTCATGGTT 2737190 30 100.0 39 .............................. AGGAACCCTTCAAAGTAACCCTCAGACGGTATAAATGCT 2737121 30 100.0 36 .............................. ATCCTTGCAACCTCCAAGGCTTTTTCTTCATCAGTC 2737055 30 100.0 38 .............................. TACCACCGTCTCTTACATAACCGACAAGTCCACCTATA 2736987 30 100.0 37 .............................. TACATTTCATCTCTGTCAAACCACCGTTCATTTTCTT 2736920 30 100.0 36 .............................. TTTGTTGATAGTCCATGCAACTCTCCGGAATCGTTA 2736854 30 100.0 36 .............................. CCTTGTTTTGACTTTGACGTATCAATGCTTGTTGCA 2736788 30 100.0 40 .............................. GATCTTTCACTCCAAACTTTCGCTGTGTGAAATATATCAC 2736718 30 100.0 35 .............................. CTATGCGCCAAGTAATTGGATATATTGCAGGGTGT 2736653 30 100.0 36 .............................. GCAGGAAAGCCTAAGTTGTTCCAAACAGAAGATGCA 2736587 30 100.0 37 .............................. ACTTAACAATCGAAAATGTTGATTTTTGGAGTCCGAA 2736520 30 100.0 41 .............................. ATTTCATCTCTTCATACGGACTTTCAAAATCTTCCCAATCG 2736449 30 100.0 39 .............................. CTGATAATTACCCAATAATCGTAAACATCGGAAGGAAGA 2736380 30 100.0 38 .............................. GCCATCGGCAGCCACCTTCTCGCAAATCAATCTTGTCT 2736312 30 100.0 36 .............................. CTTGTTAGATGATTTCCGCTAACTTGTTCGCAGATT 2736246 30 100.0 39 .............................. TACCAGAGAAACATTCAGATTGTATAAACTGGCATATGC 2736177 30 100.0 36 .............................. TTAGTTTTATAGCCTTTAGGAAGGGCTTCGCTTTCA 2736111 30 100.0 38 .............................. CGGATAGCTTGGGGTTTCTTACGCAACCAATTGAAAAC 2736043 30 100.0 38 .............................. ATGATATAAAGGAAGCTTTAGACGAGAAATTTGCTTTT 2735975 30 100.0 39 .............................. TTTGATAGTGGAAATTATTTTGGATATGATAAAAGGTGC 2735906 30 100.0 40 .............................. TAATATGGACCCGCTAGAGTTTCGCGAGTATGGTCTACAC 2735836 30 100.0 39 .............................. GCAAGAGCACGAACCTCAAATCGCCTGTACGGCTGTATG 2735767 30 100.0 36 .............................. GTTGCTAAAGAAGAAAATAATGATAATCCTTCTCTA 2735701 30 100.0 36 .............................. AGAGATAAACAACAAGACAATGGACTGCAATATATT 2735635 30 100.0 36 .............................. CAAACGGTTTGAAGAACGTTGGAGCGAGAATCTCAA 2735569 30 100.0 39 .............................. AGGGGCTGTTATGCCCCTCTTATTAGGAACCTGAACCTG 2735500 30 100.0 36 .............................. ACAAAAGTAACACAGCCAAATAAAGTGAAAGGTTCA 2735434 30 100.0 37 .............................. ACGGTGAACTGTATGTATCACCAAGTTCTATAGGTCA 2735367 30 100.0 39 .............................. GATTGTTGGAAAAAGGAAATAGACGCATTTTTTGAGTTG 2735298 30 100.0 38 .............................. GTTCCTCAAGCTGTGCATCCCTATCTGCAATTTCTTTT 2735230 30 100.0 36 .............................. CAAAGCAAAAAACTGAAGCTATGCTACTTTCATCTG 2735164 30 100.0 38 .............................. TTTAGTTCTTCCGGCGCATCGTTCTTGTATTCAGGCAA 2735096 30 100.0 38 .............................. AGGCCAACAACTGAACTAGTTTTGTTTGTCATTCTTAT 2735028 30 100.0 36 .............................. CCTTTGGAGAATATGCAAGCCCTGATTTTGGCAGTA 2734962 30 100.0 36 .............................. TAGATTCAACATTCGATTCTCCAAAGGCTTCGCTAA 2734896 30 100.0 37 .............................. TCCGCAAAAGAGAGAATCAGAGCTGCCGAACTTTTGG 2734829 30 100.0 36 .............................. ACTATATCAAGTGTTCCAAATCCAATATCAGAACTC 2734763 30 100.0 35 .............................. TGGCACAGAACAAAGCTATAATGGCAAAGTATTCC 2734698 30 100.0 39 .............................. CTGTATCTGAATGCGTCTAATTCAGGTATAGCATGTTCC 2734629 30 100.0 40 .............................. GAGAATTATTCTGGTTCATCGGCTGCCAAATATATTGTTG 2734559 30 100.0 35 .............................. AAGTCTTATTATAGACAACAAAAACACGGGTACCA 2734494 30 100.0 39 .............................. ATCATTCAAGACCACTGCCTGAATACAAGAACGATGCGC 2734425 30 100.0 36 .............................. CCAATTCATAGTACCTAGCCGTAGAAGGAACATATA 2734359 30 100.0 36 .............................. CCGAACCATTGACCAATACTATATCCTAGATTTTCA 2734293 30 100.0 37 .............................. AGCCAAGAAGAGGGGTCAAACCACTCAAAATAGCCAT 2734226 30 100.0 37 .............................. TGTAATAAAAATATGTTAATATATATTTAAGAGTAAT 2734159 30 100.0 38 .............................. TTGACAATGAAAATTACACTGTCAAAGATGGAGAAGGA 2734091 30 100.0 36 .............................. AAATATACTCTATGGTATCTGCTGGACGCAAGTTGC 2734025 30 100.0 36 .............................. AAGGTATTGTCATTGGCTGTTGCATATTTCAGTTTT 2733959 30 100.0 38 .............................. TCGATTGGCTCTTTTGTGATTTGATATATTTCTGCAGC 2733891 30 100.0 38 .............................. CCGCGGTTCCTGCGGTCCAATTTGCTTTCCCGACAATA 2733823 30 100.0 38 .............................. TAATAATATTCTATTTCTTCTTTTATCCTGTTGAATAT 2733755 30 100.0 39 .............................. CAATACCTCCTTTCAATACCGGCGGTATTTGTAATCGCC 2733686 30 100.0 38 .............................. ATAATTCAATGTTACTGTTTATTTTTTTAAAGTGCCAA 2733618 30 100.0 38 .............................. TTAAATAATTCAATTGTTCCGTTTATTCCGCCCTTAAT 2733550 30 100.0 36 .............................. TCCTCAATCTCTTTTTCGGTAAACATCCACCATCAC 2733484 30 100.0 36 .............................. TCAGGTGTAAGAGGTTTTACTTTCGCCCCTTGCGGC 2733418 30 100.0 35 .............................. AGGTGGAAGGCTCCCTGAGGGGAGCACCACCCTCC 2733353 30 96.7 36 .............................C TGATGTCGCGCCAGACAAAACGTATGTAATCAAAGA 2733287 30 96.7 35 .............................C AATTCTGCCAAGGCTCGCTCTCTGGCTTCTTGAAG 2733222 30 96.7 40 .............................C CTCAAGAACAGTTTGGTAAATTGTTTGGTATTGTTAAATC 2733152 30 96.7 36 .............................C CAAGGCTACCGAATATATCAATAATGCCTAAATCTT 2733086 30 96.7 39 .............................C TATTCGTGATGCTCCCAGCAAGCTGTGGGTCTCCGCCCA 2733017 30 96.7 35 .............................C AAATAAAACACGTTTCCATCAAATTCTCTTTTTTC 2732952 30 96.7 37 .............................C ACATAGTGAGTGCATTGCCTTGGTTTGTTTTTTCTGC 2732885 30 96.7 40 .............................C CACAAGCAGAGAGAGTGGGAGTACGTCAAGCAGTAGCGTG 2732815 30 96.7 40 .............................C AGGCCGAACCATATGATGTGATTTCCACCTTGTTGCAAAT 2732745 30 96.7 36 .............................C TGAACTTTTTTCTTTTGTAATAGATTCCATCAGTTA 2732679 30 96.7 37 .............................C CTTCATCAAGTGCATCAAAAGTATCGCTTTTTCTTTC 2732612 30 96.7 39 .............................C TCTTCCATCTAACCCCTCCCTAATTCTACATATTCTCCG 2732543 30 96.7 37 .............................C GTTTCAAATTCACTGGACCATTCACTGGACCAGTATA 2732476 30 96.7 37 .............................C CTTGGAAGCGTAATCGTTAGAAAATCCTGTTCATTCT 2732409 30 96.7 39 .............................C ACAATTCTGCAAATTTTGATTTACCGAGTAGCTTTTCTA 2732340 30 96.7 39 .............................C TACTCAACCGTAACTACTCTTTCAAATTCTACTTCTCCA 2732271 30 96.7 37 .............................C CTGCTGACGAGGTGTTTTGAAGCCCACCTATTGCTAT 2732204 30 96.7 35 .............................C CCAAGCTGAAGGATGGCAGGTACGTCATCATTGTT 2732139 30 96.7 36 .............................C CAGGCTGAGGATGAGTATATAAAATACATTCTTAAA 2732073 30 96.7 38 .............................C ATAATCCTTTCACCTTCATATCTCCCATTCAAGTTCCT 2732005 30 96.7 39 .............................C GTTGTATTCCTTTGAATGAAAGAGCAATGCTTAAAGAAA 2731936 30 96.7 40 .............................C ACAAAAATATAGTTACCATTGGCGAGTTTCTTTGCGACAC 2731866 30 96.7 37 .............................C CTCGGCACCGCTTGCCATATCACCAAGCAAATTTGTT 2731799 30 96.7 38 .............................C ACATCCACTGAGAATCTCTTAGCGAATAAAAATGCATC 2731731 30 96.7 37 .............................C TTGTTCAAAATTGGGATTCCAAGGCTACGATATCGTG 2731664 30 96.7 37 .............................C CTTCTTTTTCGCTGTCGTAATATCCGACAATGAAAGA 2731597 30 96.7 37 .............................C ACTTAATTGTTAACTTTGGTTGACGAATAGGTTTACA 2731530 30 96.7 39 .............................C TTTGAGAAATTCTGTTATATTAAAATCAAAATGTACAGC 2731461 30 96.7 37 .............................C CTGAAGGGAGGGAGTGATTTGATAAAGATAAACGAAT 2731394 30 96.7 39 .............................C AGATTCAGGCGAAAATCTGAACTTGAAGGTCAGATATGC 2731325 30 96.7 36 .............................C TCTTCCGTGTTGCCTGGGAGACGCCAGGATCTGTCT 2731259 30 96.7 37 .............................C ATGATGTAAATAATAAAAGTCTCGATAAACTTAGGAA 2731192 30 96.7 39 .............................C TTTGAGAAATTCTGTTATATTAAAATCAAAATGTACAGC 2731123 30 96.7 39 .............................C CCGTATTGTAAACCCAATTCTAATATTGATAAGCCGCTA 2731054 30 96.7 37 .............................C AGGGCTTGGGTGCTATATCTGCAGAAGTATCTGATGC 2730987 30 96.7 41 .............................C ATGTTCCGGATCATGTTGTTGTCATCATCCGGGAATTGGGC 2730916 30 96.7 38 .............................C TACCGAGCTTCTCATGCAATTCTCTTGCGCTTACGACT 2730848 30 96.7 36 .............................C ATCATTTCCTGCAAAGCTATGAACTGGTTCATTCCG 2730782 30 96.7 38 .............................C TAGTAAGAACAATAGTTCCGGATGTATCTGAATATATC 2730714 30 96.7 39 .............................C ATCCTTAAATTTGAGATATCTGAATAAGATATCTTTTTC 2730645 30 96.7 36 .............................C TGCCCTGTGGAGCCGGGAAGACAGAAACGGCAATGG 2730579 30 96.7 36 .............................C CTATGTACTCAATCTTTCTATCAGCTATAGGTGTAA 2730513 30 96.7 40 .............................C TCTATTGGAATTCTGTTTGCAATATACAGTACCTTTAAGT 2730443 30 96.7 37 .............................C AATCTAACTGTTGTTGTTTCTGTATAAGTCAATCCTT 2730376 30 96.7 36 .............................C AAACTCAATTGCGTTATGCCGTTTTCTTCTTTGTCA 2730310 30 96.7 38 .............................C AAAATAATATATCGAATTTTCCCCTTATTGGGTCCCAT 2730242 30 96.7 38 .............................C ATCCCTGGTTTTTGAGCCACCGTATAGCATTTGCAATT 2730174 30 96.7 37 .............................C TGCAGATCGTCCATTGTCAAAAAGCGAGAAGGCGCAA 2730107 30 93.3 37 ..............C..............C CTTCGCAATAAATGTAATCTATATCGTAGTCGTCTTC 2730040 30 96.7 36 .............................C CTTTGGAAACCAAGGGTTTCGGCTGTTATTCTCGCT 2729974 30 96.7 37 .............................C CACTTTAATTCAAGTAATAATCTTAATTGATACTCAT 2729907 30 96.7 36 .............................C GATGGTGCGGATTTGAAGGATGTGCCGTTCAAATAC 2729841 30 93.3 38 ..............A..............C TAAATTTTCAGGCAACTGTTTTCAAAAGCTTTGATAAA 2729773 30 80.0 0 C.........C.T......C.....A...C | ========== ====== ====== ====== ============================== ========================================= ================== 169 30 98.8 37 GTTTTTATCGTACCTATGAGGAATTGAAAT # Left flank : CTTGAGAAACATCTTATGGGAGAGCAGGAATATAAACCATACGTTGCTTCATGGTAAGGAGGATGTTTAAATGTTTGTGATTATGGTTTATGATGCAGGAGAGAGAAGAAACAGTAAGGTTTTAAAGGTGGGAAGAAAGTACCTTCATTGGGTTCAAAATTCTGTATTTGAGGGTGAGTTGACGGAAGCAAACTATCATAAGCTTAAGGAAGAGGTAAGACGCAAAGTAGACAACGAAGAGGATTCAGTTATATTTTACAAATTCAGAACGATGAAGTATACTGAAAGAGAGGTTATTGGAAAGAATGTTGATCCCAATAATTTTATCCTATGAATTTGTCGATGTGGAGTAGTGCAAAAAACCCGGGGGATCGACGAAATTTATTAATTCCCTTTAAACGCTGATTTGTAGCTGTTTAGAGGGATTTTTTGTTTTTTTGTATTGATTTTTATTTTGCAATTGGTTAAAATAAAAAGCAGAAGTTTAGCAGGCTTTATGG # Right flank : CGTTTATTCTTTCCCTCTTCGTCAACTTTCAATATCCGTGTTTTTTTTACCCGTTAAGGATTGAACCTTTTGTTATCGTATAACATATAATCTTAAAATTTTCTCAAATGGCAATAGTAACCTCGCATGTATTAATAAATATACATTGCAATAATTAGCATTTTGGCATCGACATATTATCACGTATTTAATAATATGTAAGACGAAATTTACTTAAATTATGGGAACTTCCAGAGGTGAAATACATTTGCTGTTGAGGTCGGTTAAAACTCAGTTTAGATTAATGGTCAACAAACGTAATTTTTGGGTTGCCATCTTCCTGGGACTGTTTTACTGTATAATAAGTTATGCCCATTCGCTATATATTTATCGGGGATATGATGTTTCGGGAACTCTTAATGCAGCGTCGCTTTTTATTGGAAACGCCGATACGGCGCTTTTTGAAAAGTATTTTCTAATTTATGTTTCCGTTTGTGGTGATTTTACCATTTTCATTTTCT # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCGTACCTATGAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.68 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 4 3785203-3791136 **** Predicted by CRISPRDetect 2.4 *** >NC_009012.1 Acetivibrio thermocellus ATCC 27405, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 3785203 37 100.0 36 ..................................... ATGTAGATGAATGATTACGATGTTGGAGAAATATTT 3785276 37 100.0 36 ..................................... CTGTATCCGCATGTCCTACAGCAGATGTCACATCTG 3785349 37 100.0 37 ..................................... ATCTTTTGTATATCAAAGGAAGCTACTTCTGTAATTA 3785423 37 100.0 36 ..................................... AGTGCTGCAAACATCACAGCAGTATTCAATCAGGAA 3785496 37 100.0 36 ..................................... TCGCATTTTCTACATCAAACAAAGTTGCTCCGTCGT 3785569 37 100.0 37 ..................................... CCTCCAAGTTTCAGTCTCCATGAAGTACCATTCCCCT 3785643 37 100.0 37 ..................................... GTGAAACTTGCCGGTTTTTATGGCGTATCTGTAGATT 3785717 37 100.0 36 ..................................... TCAAAGTGCACAAATAAAAAGTGCTTGTGTCAATAC 3785790 37 100.0 38 ..................................... CACAAGTTGCAAATGATGTATTGCCGCCGGTAATTTCC 3785865 37 100.0 35 ..................................... GCCATCAGTGGCCGATAGATAAGGCACAATATCTA 3785937 37 100.0 36 ..................................... GTTGCTATTCGAGCAGAAAGAAACCCAAAAGTTATC 3786010 37 100.0 37 ..................................... GTGATATTATATTGAATCTGTTTAAATGAGATATTCA 3786084 37 100.0 37 ..................................... CCACTGTCTTCTGTCAATTGTTATTATATCATATATT 3786158 37 100.0 35 ..................................... ATGTATGTTCAAATACATCATAAATATGGTAAGGA 3786230 37 100.0 39 ..................................... TTGATAATGTTCTTTTCAATAGTGCCAAGGTCTAATCCT 3786306 37 100.0 39 ..................................... TCCCCGCCGTGTTAATCCGATTGTAAACCTATTCGTCAA 3786382 37 100.0 38 ..................................... ACTAATTTGATTTATAAAAATGACTTAATTACAAATGA 3786457 37 100.0 36 ..................................... CTATAGATATGTATGGAGTACCGAAAGGCGACCCAT 3786530 37 100.0 36 ..................................... AATACGGTGTCAGTGACGTTTTGAACCTCAACCAAG 3786603 37 100.0 35 ..................................... ACTCTCCCATGTTCATTCCTCCTCTTTTCAAATTT 3786675 37 100.0 36 ..................................... AGATAGACGTACATATGACAGGAGGTTGAAGTTATT 3786748 37 100.0 38 ..................................... GAAGCTATGCCTTATGTGGGTGGACGCAGTTCTTCAGG 3786823 37 100.0 38 ..................................... CTATTTTGTAATAATCACTTTTAATTTCATAACCTACA 3786898 37 100.0 36 ..................................... AAATAGTACATAGGTGGAGAGCAGCAAACCCGCGAA 3786971 37 100.0 37 ..................................... TTTGCAACGTTTCCGTTGCTGTTAACTACATAGCAAG 3787045 37 100.0 37 ..................................... ACGATGAGCTTAAAAACGATTACTAAAGAGAGGATGG 3787119 37 100.0 36 ..................................... ATTTTTGCTTCTCTAGCTTGTCTTTTCGTATGTATG 3787192 37 100.0 36 ..................................... ACTGCTTTAGCGTGATCCTTGTGACCGTGCGATACA 3787265 37 100.0 36 ..................................... TGGACTTTGCTCAGGTCATTGGCCCGGAGAAACTGC 3787338 37 100.0 35 ..................................... TCATTCTTGCAAGCCTGAATCAGCCCTTTTAGATA 3787410 37 100.0 39 ..................................... GGTTCTATGATTTCGATATACGACCCGCCTCTATATCCG 3787486 37 100.0 36 ..................................... GTTTTCTTAATTTCAAATACTCTTTTTGCCATTTTT 3787559 37 100.0 36 ..................................... AATCCCAGCGAAGTCCTTTAGAGAACAGATTTTTGA 3787632 37 100.0 38 ..................................... TTAATTTTAAAGACTTATTCCGCAATGATATAAATATG 3787707 37 100.0 38 ..................................... ACTTTGCCTAAGAAGAATAAAAGTATTCGTAGAATATT 3787782 37 100.0 38 ..................................... CTAACATTATTCACACCTCCCATCAACGAACCTTTTTT 3787857 37 100.0 36 ..................................... ACTTAGCCGTTGCAGTGGGCTTACCTTCTAAAAATT 3787930 37 100.0 36 ..................................... ACTTTCCTTGATATGTTTACCTGTAAAGTAAAAATA 3788003 37 100.0 36 ..................................... CTTATATATAGAACATAAATTTTTCTATAATATTAA 3788076 37 100.0 35 ..................................... CCCTTACAGTGGCGATATTTGTGGAATGAGGCTGT 3788148 37 100.0 37 ..................................... ATCTCTTGTAGAATTTTCTCTGCCTTTTCTAAGCTAC 3788222 37 100.0 36 ..................................... ACAGTTATCATAGGCTATCCTCCTTATAAATGTTAA 3788295 37 100.0 37 ..................................... AATAATCCAAAAGCATTTCTACTGCTTTTGGAAATTT 3788369 37 100.0 37 ..................................... ATATTTACTCCGGCATCCCTCAGCCGGCGAAAAAGGT 3788443 37 100.0 35 ..................................... ATAATTCTTCTCGTTTTTGTTTTAATTCGTTTATT 3788515 37 100.0 36 ..................................... GTAATAAGCTGTCCAATCACCTCCTAGTTTTCCTGG 3788588 37 100.0 38 ..................................... TAGAACTTGAAAGAGAATCCTTCAGGGAGAGTGGTACT 3788663 37 100.0 37 ..................................... TATCTTCAAAGTAATAGCTGTTATATGTGTCAAGTTC 3788737 37 100.0 36 ..................................... TTAATTCATCGCCATTTTTGCCTATAAGTCCATAAA 3788810 37 100.0 36 ..................................... CTTCTTCGAAGCTACTAAAGGTGGCCGTGCAGTAGT 3788883 37 100.0 36 ..................................... ATAGATAAGGCTATTGCAAGAGTAGCGAATGTGCTA 3788956 37 100.0 38 ..................................... CAAATATTTCAGAAGCTATTGCGGATATATTTACTGTG 3789031 37 100.0 39 ..................................... TTGAATTCCTGCAATGTGGCAGGCTTTTCTCAACCTAGG 3789107 37 100.0 38 ..................................... GTCCCTGTGATTTCAGCCAATTTATCGCATTTTCAATT 3789182 37 100.0 39 ..................................... ACATACAGTTCGGTGTTTTCATCTAGTGCTACATTTATT 3789258 37 100.0 36 ..................................... CCAGCAGGTTGAGCGTTAGGCAGGTTTCCCTGCCCG 3789331 37 100.0 35 ..................................... GTGGAAGATGCGTTGTTTATGTCAGCAATTTCCGG 3789403 37 100.0 36 ..................................... CAAAATGGCAGGTGGTAAAACCACAGCTAATACATC 3789476 37 100.0 36 ..................................... GTTTCATCAACATCCATCTCGTCTACATAGAACTCA 3789549 37 100.0 37 ..................................... ATAACATATTTTAAAGCAAAAAGCAGAAAATCACTGG 3789623 37 100.0 35 ..................................... TGATTGTAAAGGAATATGTATCCCCAAGCCTTACA 3789695 37 100.0 38 ..................................... TGGATAGTGCAAACATAGATGAAGCCTCCGTAGGCCTT 3789770 37 100.0 37 ..................................... TCTATTTCAGCAACAATATATTTGGCAGCCGATGAAT 3789844 37 100.0 37 ..................................... ATCATTGTATATATCTTTGGAGTAACGTATAATACCC 3789918 37 100.0 37 ..................................... TTGATAATGTTCTTTTCAATAGTGCCAAGGTCTAATC 3789992 37 100.0 37 ..................................... ACAGGAACGTGCGTTCTCTGGACGAGGTAACTATCGT 3790066 37 100.0 35 ..................................... TAGCACACAACAGCAAAAAAACAAAGAAAAAAAGA 3790138 37 100.0 36 ..................................... GCACCAACTTGTCTTTTTTGATGAGGCTTGCAACAA 3790211 37 100.0 39 ..................................... ATAATGTGCTGCTGGATGCCCGTACAGTCTTCCACTGTA 3790287 37 100.0 39 ..................................... TAGATTGCGAAAAGCCTGCCACATTGCAGGTCACAAGGT 3790363 37 100.0 35 ..................................... TTGTTTTTTCACTTATAGACTTAATTCAGTGTGGC 3790435 37 100.0 41 ..................................... CTTTCTCAATGGCTGACTTCGATGCGCCCTGGGCAAGCATT 3790513 37 100.0 36 ..................................... GTGCTGCTATCTCGGCTATTCTTTCATCTATACTCA 3790586 37 100.0 35 ..................................... TTTGCTCTTTATCCGGTGCTCTTATCTCATTCACA 3790658 37 100.0 36 ..................................... ACGAGAACGGGAAAGCAATATTGAGAAAACCCTTTG 3790731 37 100.0 35 ..................................... TTGGCGGCATAGCTTCTATTATAGAAAATTCTACT 3790803 37 100.0 36 ..................................... TTATATCGAAGAAAAAAGAACAAAAGTGAGGCGATT 3790876 37 100.0 39 ..................................... ATAATTTCGGGAGTGTAGAATTTCAACTCGGCAATAAGA 3790952 37 100.0 37 ..................................... GAATGATTGAATCAATAACCATTATTGCCTGCAATTA 3791026 35 94.6 39 ...................--................ CATACTTCTATCAGTTTGTCGCGTTCTTCTCTTTCCAAT 3791100 37 78.4 0 ......A.....T...........TGG.A...C...T | ========== ====== ====== ====== ===================================== ========================================= ================== 81 37 99.7 37 GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC # Left flank : GCCGGTTAAGTAGCTTGAAATGAGTAAAAAAGTCTCATCAAAAAATGCTTGTAAACCTTGAAAATAGCAGGATTTTCCTGCTATTTTCTGTCTTATTATGCTTTTGGATTGAAACAACGACTTCTGTTAAATTTGGAAATTAAACTCTACTTTTCTTAAATGAAATATAATAAAAAAGCTTAATTTATAAAACTTTAAAGAATGCTGTCAACGAAATGGAATTCCAAATTGTAATATTTGTTGAAAAGATTATTAGTTTATGATATATATAAGTTGTAAGTTGGATTGTGAGTGGAAAAATGTGGCTGCAAAATTATTGGAAAATTTGAAGTGATGGGCTTGTAAATCTTGAAAATGGCGGGTTTGAAGCCTATGTTGGTGACTGAAAAATGGGTGGAATTTGATAAAAATCGACTATTTTTTGATGAAAAATGTGCAAAAAAGTTTCGTCAAAAAAATCTTGTAGGCTTTGAAAATGGCGGGATTTGACTTCGAGGACT # Right flank : TCTACACTTACATAAGTTTGTTATGATTGCTAATGTACGTCTAAATTTTATTTTAACTAAAGTATTAAACCTAAATTTCAACAAAAATTAAAAATCAAAATAAAATTTACACAAAATTGTTAAATTCTTTAGCGAATATATAATATAAAAATGCATTTAACAAAACCAGTCTTTAAGAAGATGCAAAGTCCAATCATACTACAAAACAGAACAGAATAAAAATTGCCGTAAAACAATAAGTTTTGTCGAAAAAAGTTACATTAATTGACATGGCTTGCTATATGATGTACAATAATGCTGTAAATTTTTCGATTTGAAAGAAGGTGACTTTCTTGCTTGCAGGTGTATTGCAGCTGGGACAGTACGCACTCAATAAAAAGAGTACTGACACCGAGGAATATCTTCAAGTCATTGAAAACCCTAATGATAAAGGCAATTACAATCATGTCTTAAAAATTGCATTTGAATCTACCGAAGGAAACATAGTCTATCGTGGGGTT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: F [matched GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.27 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 5 3813209-3816348 **** Predicted by CRISPRDetect 2.4 *** >NC_009012.1 Acetivibrio thermocellus ATCC 27405, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 3813209 37 100.0 36 ..................................... CTTTTTTTATCTCGTTATCTTCACCGTCTGTGTATC 3813282 37 100.0 37 ..................................... ATTTCTCATATTCAATTTTTACCTTTTCCATTTTTTA 3813356 37 100.0 40 ..................................... ATCTTGGGGTGCAAGAGGTCGCTGGTTCAAATCCAGTCAC 3813433 37 100.0 37 ..................................... ATGGGCATGCTCATATGGTGTATCCCTCAACGCTATA 3813507 37 100.0 37 ..................................... CTATCTGTTGCGATTCTCCGCCACTGGGATTATCACC 3813581 37 100.0 37 ..................................... ATTCACAAAATCAGCACTCAAGATGGGAAGTGACTTG 3813655 37 100.0 36 ..................................... ATCATACTACCCATAAAACCTTCTAATTGCTTTAGC 3813728 37 100.0 37 ..................................... TTTTCCTTACAATTGTTAAACATCCAAATATCGTCAT 3813802 37 100.0 36 ..................................... CGCACATTTCTATCCCTATACTGTTGCGGTTGGTAA 3813875 37 100.0 38 ..................................... TATGTATCATAATGCACGTGGCACTAACTGTAAGACTT 3813950 37 100.0 36 ..................................... ACGACAACATGAGAAGAAAAGGGGATGAAGCACAGA 3814023 37 100.0 36 ..................................... TCTTCTCTTAAAGCACTACCAGTATCTTCTACTATT 3814096 37 100.0 36 ..................................... TTGTATGTATTTTATTAATATAGTGTGCTTGTAATT 3814169 37 100.0 37 ..................................... GGATTTGTCAAGTCTGCTAAAATAGCGGGCGGCAAAA 3814243 37 100.0 36 ..................................... CCTTCTCCCCATTTACCACCGGGCAAATTAACTGTA 3814316 37 100.0 36 ..................................... GTTAATCCCAAATTATGCTCAAAAGAAAAAAACCAA 3814389 37 100.0 37 ..................................... AATATTGGAATCCAAAATAACCTTCAATTTTCCACCA 3814463 37 100.0 35 ..................................... GTGACGTTTTGGCGTCTATTGAAAATCTAGGATAT 3814535 37 100.0 36 ..................................... TTTCACATGCATAATATGTGAAATAGCGACCGAACA 3814608 37 100.0 35 ..................................... AACCTCCTTTTTATATTTCTGGATCATCATCATAA 3814680 37 100.0 36 ..................................... CAGTATTGCATTGTTATTCCTCGCTTTCTTTTTGTT 3814753 37 100.0 36 ..................................... ATACACTTCAAGAGAATAATGTCCAGTTCGTGTCGG 3814826 37 100.0 37 ..................................... ATGGTGATGAAGTGAGGTATGAAGCTGGAAGCGGAGA 3814900 37 100.0 36 ..................................... TTTTATAGTAGATTAAGTTTTCTGCGTTAAAATAAT 3814973 37 100.0 38 ..................................... ATTGTCTTGAACTCAGGGTCTATATACCGCACCAAGCA 3815048 37 100.0 38 ..................................... CTTCGGATAATCCGTCTTCTCGTTTAATTCTTAAGCCA 3815123 37 100.0 37 ..................................... ACATATACGAAGGTTTAAACAGGACAGCAGAGCAAAG 3815197 37 100.0 38 ..................................... GACTACATTCTTTTAATTTTTAAAAAAGAAATATTAAA 3815272 37 100.0 39 ..................................... AATCTTCTGCGAGCAGAAGGAGTTCGTTTCTGTTGCAAC 3815348 37 100.0 39 ..................................... CCCAAAGAAAGCGCATGATAGGGTCTTTAGGTGGCTTCG 3815424 37 100.0 35 ..................................... ATATTACAGTAACAACTAAAGCAGGACATAAAAGT 3815496 37 100.0 37 ..................................... TACATGATATTACCTCCTATTTTTATTTTTCTTCCAG 3815570 37 100.0 38 ..................................... AGCATCCCTACTTAAAGAGACTGGGGGCATATAACCCC 3815645 37 100.0 41 ..................................... TTCAATCGTGGCCTCCAGGGAACGGGCGTAAAACAGTTCTT 3815723 37 100.0 37 ..................................... ATAGAAGGGGCTTAAGCCCTTTTTATTCTGACCTGAA 3815797 37 100.0 37 ..................................... AGGAAGCAGAGGATTACGTACGTCAGAAAACAGACTT 3815871 37 100.0 35 ..................................... TTTTGTCAAGCCATTGATACATCCTTTAATGTCTA 3815943 37 100.0 38 ..................................... GTATAGCACAGGCCCAAGTAAAAGAAAGGAGTTCATCA 3816018 37 100.0 36 ..................................... CTACAGCTATAGCTTGCTTGAATACAAACTCAACGA 3816091 37 100.0 36 ..................................... GTCCCTCCTTATGCTTCAACATTGATTGCTACGCCT 3816164 37 100.0 38 ..................................... AACCTTACTATGATGTTATAACATACAAAGGTTGTAAA 3816239 37 97.3 36 ............T........................ CTCAAACTCAGTGATACTAAGTATTTTAAAAGAAAA 3816312 37 94.6 0 ...............................AA.... | ========== ====== ====== ====== ===================================== ========================================= ================== 43 37 99.8 37 GTTGAAGAGGTACTTCCAGTAAAACAAGGATTGAAAC # Left flank : CGGTAAAGAGATTGACAGTATAAATAGATTGAGAAACAAAGTTGAGGCAAGAAATAATAGTATTTTTGCTCATGGTTATGAATTTATTAGTAAAGAAAAGTATAATGAATTTAAAAAAGTGGTTGAAGATTATATGAACTTGTTGTGTTCTATAGAAGGAATAGATAAAGAAGAACTGTTTGATTCATGCGAGTTTATAAAGCTATAGCCGAGAGTTAATATGATTAAAGAATAAGGTGTTGAAATTAAAACCAGATTATGTTATGTTTTAATTAAAGTGATAAGTAACATTTTACAAAATGTGGATACAAAATTATTGAGAATTTTGAGTTCATGTTCGTTAAAGCCTTGGAAATAGTGGTATGGAAGCTTATGTTGATAGCAAAAAATTGAATGAAAAATGGTGGATTTTAGGAGAATTTTGATAAAATATGACCAAAAGAGTTCAGTCAAAAAAATCTTGTAAGCATTGACATTTAAGCAATATCACCTCGAGGACT # Right flank : CATATGAGACTCTATTTCAAGCCTTACAGAATCAGAACTTCCACCAATCCATTTTCTGTGCCGTTAAAACAAACCTTGTAAGGAGGTGCCGAATGAAGCTGATTCTGAATACACCCGGACTTTACCTTTGTAAAAGGGGAGAGTGCTTTCAGATTCAAAGCGAGAATGAAAAACGGGAAATAGCTGCAACTAAAGTTGACCAAATAATGATAACCACTCATGCAGCTCTTACAACTGATGCAATTGAACTGGCTCTTGAATACAATATTGACATAATATTTTTAAAAAACACGGGACAACCAATGGGGCGTGTATGGCATTCAAAACTTGGAAGTATCAGTACAATTAGAAGAAAACAATTATTCCTCCAGGATAGCCCGCTTGGGCTTCAACTTGTAAAAGAATGGATCTTGGAGAAAATGGATAATCAAATACGGCTGTTAAAGAAACTGGAAGTTAACCGCAGAGATGATGAAAAACGTGCTATAATCAGGGATACC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGAGGTACTTCCAGTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: F [matched GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //