Array 1 3828-1662 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWWV01000167.1 Pseudomonas aeruginosa strain B1486 GCID_CRPK_0020_NODE_85.ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3827 29 100.0 32 ............................. GTTGAGTTTATGAGGCTCATGACTCGCTGCAG 3766 29 100.0 32 ............................. CCACTGCGCAGGCACGCCACCGAGACTGCTGA 3705 29 100.0 32 ............................. TTTCGTCGTGCGACTCATACACTGGCGCCTCC 3644 29 100.0 33 ............................. GTAGGTGGTCAGCGCCTGCGTGGTCGTCTGGTT 3582 29 100.0 32 ............................. ACTTGCCTTGATGACCTCGCGCTTTTCCTGCT 3521 29 100.0 32 ............................. TCGTAGTCTACGATGAAGCGCGGGTCGGTTTC 3460 29 100.0 32 ............................. TTGAACAGCAAGGACGCTGTACTCAAGCCCGC 3399 29 100.0 32 ............................. TTGATGGTGCGGTAGGCTGCTTTGCCCTCCTC 3338 29 100.0 32 ............................. CACGTTTCGGTCGGCTATCGCGTCCTGCGCGC 3277 29 100.0 32 ............................. TGTTGGAACCCGCTAGCGCGGGCGAGCAGGCG 3216 29 100.0 32 ............................. TCTATGGGAGGTGGGGAGTGAACGAGACCGTA 3155 29 100.0 32 ............................. TTGAGGGCAAACGACGTTTTGCCCATCGAGGG 3094 29 100.0 32 ............................. GCGTTTCCACGCAGGCAGATGCTCGCCACCAC 3033 29 100.0 32 ............................. TAACGGCCCGCCCCTTCACGCGACCTCCCGCG 2972 29 100.0 32 ............................. CCAAGAAAGAACGCCGAAAGGCCGTTAGGAAA 2911 29 100.0 32 ............................. ACGTTGAGTACGTCGGCGCCGTACTTTTCGTC 2850 29 100.0 32 ............................. CGGGCCTTGGCAGCGAGCAGGGCCTTCATGCC 2789 29 96.6 32 .................T........... CGCACTGATGCCAGAGCCGGAGTCGCGACCGG 2728 29 100.0 32 ............................. GCGCTTCACGGAGACGGCCTGCTGTTCCCTGC 2667 29 100.0 32 ............................. TTCAGCAGGGCGTCAGGGATGGCATCGTGTCC 2606 29 100.0 32 ............................. GCTACTGTCGAAGCCGGCACCACTCTGGACGC 2545 29 100.0 32 ............................. GCCGGATTCCGCTGCCGGGCTACATCATCCCG 2484 29 100.0 33 ............................. CGGGGCATGACTTCAACCCACCCCCAGCCCTCC 2422 29 100.0 32 ............................. TCGCACTTCCAGCCATGGCTGGACAAAGCGGC 2361 29 100.0 32 ............................. GCAGTCAAGGCTGCCGGCGGCCAGTCCGCCCT 2300 29 100.0 32 ............................. GTGTAGCGGAACCGGGCGGCGCCGCCGGCGAG 2239 29 100.0 32 ............................. GCCCGCAGGGATGCCAGCACGCAGCCAGTCGC 2178 29 100.0 32 ............................. CAGTGACGGCAGCAGACGCGGCGATGCTGGAT 2117 29 100.0 32 ............................. TCGGTAGACGCACAGATGGTCGAGCAACTTCG 2056 29 100.0 32 ............................. GCGCAGGGCAAAGCCAAGGTCACCGCCGGCAC 1995 29 96.6 32 ...........A................. TTCGAGGTCAGCGGCTTCGGCCCCGGCGAGCA 1934 29 96.6 32 ...........A................. CCGGGAATGAACGTTCCCATGTCGGCTACGCC 1873 29 96.6 32 ...........A................. GTCGCCAGGCCCACGTCGGCGGATCACCAACA 1812 29 96.6 32 ...........A................. ATGTAGCTGTTACGCGGTCCCGCGGTGCTGAG 1751 29 96.6 32 ...........A................. GTGATGGAGCGGACCGCCCCGAGCACCGCAGA 1690 29 93.1 0 ........T..A................. | ========== ====== ====== ====== ============================= ================================= ================== 36 29 99.2 32 GTGTTCCCCACGTGCGTGGGGATGAACCG # Left flank : TGACCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAACCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGGCACAGGACGCAAGGGTGAGCTTCCTGGCCGTAGTGGTGGAAAACGTCCCGCCGCGCTTGCGCGGACGTCTGGCAATCTGGCTGCTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCGCCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGCGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATTCTGTACGGTAAGT # Right flank : TGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCACGGGGCGAGCCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCTTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGAGCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACGCCCTTGTCGATGGCGGGCTGGGCGGGAACCGGCCAGAGCAGGGAGAGACCGGGTTGCCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGTGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGTGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 14006-13000 **** Predicted by CRISPRDetect 2.4 *** >NZ_RWWV01000167.1 Pseudomonas aeruginosa strain B1486 GCID_CRPK_0020_NODE_85.ctg_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 14005 29 100.0 32 ............................. CTGCGCAGCACCTCGGCCGCCGGCTTGGTGAC 13944 29 100.0 32 ............................. AACACGCTGGCCGGTGAGTTCTCCGGGCCTGA 13883 29 100.0 32 ............................. CGTGCAGTCGGTAAGAATCATCGCGCTGCCGC 13822 29 100.0 33 ............................. CTTCTATCCGAAACCCAGGTCACGCCAGACAAC 13760 29 100.0 32 ............................. GCCCCAAAAAGCGTTGGCGTCATCGGCTGGCT 13699 29 100.0 32 ............................. TCGTAGCCCTCCGGGAGGGATTCGAACTTGTA 13638 29 100.0 32 ............................. CCTCCGACGTGGAGGTTGAGGCGGATGGCTAC 13577 29 100.0 32 ............................. TGGAACTTCAGGTCCTTGTTGGTCAGGCGCTT 13516 29 100.0 32 ............................. CTCCCGTGAGCACTCAGGGCATCCAGTCGGCT 13455 29 100.0 32 ............................. AAAGCCATCGGGGCACGCATCGTTGCGCCAGC 13394 29 100.0 32 ............................. GCGATCTGAGCACCTGCGGATGCGTAGATGTA 13333 29 100.0 32 ............................. TAGGTGTGCTGGGCGTAGTCGGTGGAGTTCTG 13272 29 100.0 32 ............................. GCCGTGTCGTTCGATGGTGATGTCGTGCTGCT 13211 29 100.0 32 ............................. AGGTATTCCTTGCCCTTGGCCAGGAGCACGCC 13150 29 100.0 32 ............................. TCATCGATCGTGGCGGCTGCACTGGCTGCCTG 13089 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCG 13028 28 79.3 0 A..........A..C.....-..A....T | C [13019] ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.2 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTTGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGCCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGTTGAGGTGGTGGGTCGTATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATCCCGATGCGGGTAGGTTTCGAATGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCAGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGCTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : GTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCATGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGGGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGTGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGGAGCAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //