Array 1 38025-39074 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTAW01000012.1 Pseudomonas aeruginosa strain PA-W13 IPC8_12.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 38025 28 100.0 32 ............................ ATCGGCGCCAGCATGGACGAGCGTATCCAGGG 38085 28 100.0 32 ............................ GACAGCTACCAGGTCCGACATATCAACGCGCA 38145 28 100.0 32 ............................ GGGAACAGCGTCTTGCTGTTGCACCGCCGCAC 38205 28 100.0 33 ............................ ACCGGCTCCTGCCTCTCCAGCTCCGCGACCCTG 38266 28 100.0 32 ............................ TGGAAGCAGGGCCAGGATGTCGCAGTCCATCA 38326 28 100.0 32 ............................ TCTGCTCTCCCGCGCCAGCCCGATATATCCAC 38386 28 100.0 32 ............................ GCTGGCGCCCTGGTCTGCGTCGTTTGCGATCT 38446 28 100.0 32 ............................ ACTTCGTGCGTGAACTCCAGTCGAGGGGATAC 38506 28 100.0 32 ............................ AAGGACACCAACCTGGTGCCGGCAAACTTCGT 38566 28 100.0 32 ............................ TCATTCCAGACCATGGCCGCTCACTACTGAGC 38626 28 100.0 32 ............................ TCCCGCGGATACATGATCTGGTGGTGTCGCTC 38686 28 100.0 33 ............................ GTCCTCGATCAGCTTCGCGGCGCGGGCGGTGTA 38747 28 100.0 32 ............................ ATCTACTGCCGCACAACAGGCCAGCGCATCGG 38807 28 100.0 32 ............................ AAGAGGCTCACATCGCTCATAGCGTCCTGGGC 38867 28 100.0 32 ............................ AGAAGGCCGGGGTCCGTGTGTGGCGCATTGAC 38927 28 100.0 32 ............................ TTACCTTTAAAAGGCTTTAAAAGGCCTTTTAG 38987 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 39047 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================= ================== 18 28 98.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAGCCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGTTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGACGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGAACTTCGTTGCGGACATGCCGATGAGGTGCTGACGGGGTTCTTCAGAACCAGGGAACGGAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48696-47948 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTAW01000012.1 Pseudomonas aeruginosa strain PA-W13 IPC8_12.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48695 28 100.0 32 ............................ AGCTGAAGGTCGCCACCCCCGGTAACCCCGAC 48635 28 100.0 32 ............................ ATCAAGGTCAACCTGGGCTCCGGCGCCGGCGG 48575 28 100.0 32 ............................ TTGACGCCCAGGGCGCCGACAAGGACCGTCGC 48515 28 100.0 32 ............................ TCCTCCAGAGGATTGCATCAAGGGGCTGACGG 48455 28 100.0 32 ............................ ATCTACCCGCAAAGCAAAGCCCCGCGGACCGA 48395 28 100.0 32 ............................ AACGCGTCCAACGTGCTAGCCAAGGCCACCCG 48335 28 100.0 32 ............................ AGTGATGGAAAACAGCGCCGTGACCCAACCTG 48275 28 100.0 32 ............................ AATCCCGACTTGGCGTCGTTGATAGCCACCTC 48215 28 100.0 32 ............................ ACCCAGCGCCGCCGGGATCTTCTCCGCCACCT 48155 28 100.0 32 ............................ AACATCGACGGGTCGAACTGCTCCGGCACCTG 48095 28 100.0 32 ............................ AGGGGGGGGTCGGCAGGCAGACTCACCAGCAG 48035 28 100.0 32 ............................ TTCGACGCCGCCAGGGTTGCCGCATCGCCGTC 47975 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 13 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCSACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCRTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGCCGCAGAATTCGATAGATCCGATAGGGACAGGCCACGGTCAACATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 475-2364 **** Predicted by CRISPRDetect 2.4 *** >NZ_NTAW01000009.1 Pseudomonas aeruginosa strain PA-W13 IPC8_9.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 475 28 100.0 32 ............................ CTGAACGCGATTCGGGAAATCGACATTGAACA 535 28 100.0 32 ............................ AGATTCGAAGCTATCAGGCCTACCGTCACCAA 595 28 100.0 32 ............................ TGGACGCCGACAGCCGCTACGCCAAGATGGTC 655 28 100.0 32 ............................ TTCATGGGGATGAGTCCCGCGCAGCGGGAGAT 715 28 100.0 32 ............................ ATGGAGGCCACTAATTCGCGGTACATGATCCG 775 28 100.0 32 ............................ ATCAGCATGTCGAGGCCATAGCGCATCTTGTG 835 28 100.0 32 ............................ CAGTTCTGGCGGCGGACCTTCTCCCTTGATGT 895 28 100.0 32 ............................ AGATGGAAATACCTCGCTCGTCATTCCAGGTG 955 28 100.0 32 ............................ TCGTCGTTCCACCGCTCGCCGTTAAGCCAAGT 1015 28 100.0 32 ............................ AATTCGGCGCTGAGCTGATTCGTCACCTGGCT 1075 28 100.0 32 ............................ TGAAGAACGTGGATCGTCAGTACGACGACCAG 1135 28 100.0 32 ............................ AAGGTCGTCCGTTCGGCAATTCGCGTGCTCCG 1195 28 100.0 32 ............................ TGCAAGCCTCGGTCAAAGACACTGAGGTACTA 1255 28 100.0 32 ............................ TATGTCCGTCAAGTGTTTGGCGGGGACTATCG 1315 28 100.0 32 ............................ ATCCAGCACGAACACCATCTGTGTAGGTTTCC 1375 28 100.0 32 ............................ AGGAAGCGCTCCAGGCTGCGCACGCTCGGCAG 1435 28 100.0 32 ............................ CGGTCAAGTCGTGGCTCTTCGAGGCGACTGAG 1495 28 100.0 32 ............................ TCTTCGTTCCGTTCCGCCTCGAGCACATCGAA 1555 28 100.0 32 ............................ CGAACCACTGGAGGTACGTGCACAGATCGGAC 1615 28 100.0 32 ............................ GTTCCGCCATCGCCGCCACCACCCGTACCGCC 1675 28 100.0 32 ............................ TCCGAGTGCCGGGTGGATGTTGTGCTACGGCC 1735 28 100.0 32 ............................ ATGCAGAGGCGGTCGATGCGCGGCAGCTTCAC 1795 28 100.0 32 ............................ CGACGCTCTGCCAGCCGCCGGCGGTGTAGAGG 1855 28 100.0 32 ............................ GCTTGCATCGCACGCCCCGCAGGAGCCACCAC 1915 28 100.0 32 ............................ GCATCGAGCATCGTGCGGCAGTCGAAAATATC 1975 28 100.0 32 ............................ TCGCTGACCGCATCTTCCCGCTCTTCCCACGC 2035 28 100.0 32 ............................ AGCTCGCGCGACAACTGAACGAGATCGCAAAC 2095 28 100.0 33 ............................ TGTTTGCACAGGCTCGCTGTGTTCTGGTTTTTT 2156 28 100.0 32 ............................ TTTGGGTCGTTCATGTCCACGCCGCGTTTGCG 2216 28 100.0 33 ............................ GCGCATGTCCATCAAGGAACTCGCCGCCAACAT 2277 28 96.4 32 ........................A... TATCACCCAAGCCCGCGACGTCGACGCGGAAC 2337 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 32 28 99.9 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : TACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCCTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCTGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCTCATCACAAGACCTTTTGCCCTCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACACCCTTATAAATCAGTAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTAG # Right flank : ACTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGACCAAGGCAGGCACAAAGAACAGCTTGACCACCAAACATGACGCCCGCTCAAGCGCTAAGCAACAGCGTCCCCCCTCACTGCCGTGTAGCTAAGAAATCGCGAGCGATATAGTCCCGTAGGGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //