Array 1 337254-336349 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007029.1 Thioalkalivibrio paradoxus ARh 1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 337253 36 100.0 36 .................................... ATCGCGACCGGCCGCGAACGCCTCCGCGGCGGCGTG 337181 36 100.0 35 .................................... AAGAAAGCATCAGGCCTGGGCGGCACCGAGGTCAT 337110 36 100.0 37 .................................... CCGAGCGCGTAGATTTCGCACCCGTCCGCGCCATCGT 337037 36 100.0 37 .................................... CAGCGCTACTTCCGCTATTGGGACCCGCGCGAACAGC 336964 36 100.0 36 .................................... ACCGAAGCGATGACGCAGCTGCAGGCCAAGGGCGAC 336892 36 100.0 36 .................................... CCGGCGAGCTGGCCCGCGGCGCTCAGCCGGCTGAAC 336820 36 100.0 35 .................................... CTGGGGCGCGGCGAAGAGGTGCCGGGCGACGTGCT 336749 36 100.0 38 .................................... CAGCGCTTGCCCTCGGAATCGACAGTGCAGCCGTGCTG 336675 36 100.0 36 .................................... TCCCACACCAGGTTCCGGCTCGCCGTGTTCACGCAG 336603 36 100.0 38 .................................... CCGGCGGCTGCCGCGGCGGTGGGCAGCAGCGCCATCAG 336529 36 100.0 36 .................................... GTTGCAACCGCCGACGCCGCGCCGCAGGAAAACCAG 336457 36 100.0 37 .................................... CCGGCACCCCCTACGCCGCCGGCCCCATCGCGTTTAC 336384 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 13 36 100.0 36 GTGATCCCCGGCCAAACGCCGGGGTGGAATTGAAGC # Left flank : CGGCGACGACATGGACGGCGGTAACCCCCGTGATTCTCCCCGGCTACGACAGCCGCCGCGGCAAGCCACGCCCCGCACGCACGGCCCGCCGCCTGCTGCAACACGCGGGCATCCCGCAGGAGTCCGTGCGAGCGGTCCATCTGCATCCGTACCCACGCATTCACGGGCTGGCCGGACGCGGGCGATTCCTTGTGCCCAGGCACCTGCAGAAGTACCCGCGGTCCTATGTGACGATCGAGTTTCACCAACCAGTCGCGGGACCGATCGTTCTCGGCGCCGGATCGGGTTGGGGGCTCGGTCTGCTCGCGGCTTTCGAGCGGTGACGTGATGCCGCCAGCCCTGGGGAGCGCTCGCAACTATGTTTTCGCTGAGAAATCATGGAGATCATCGTGCTGTATGCCGTATCCTGATCGCGTACGACCCGCAGAACGGCCGCGACAGACCGAGCGCTCGAAAAAGCCGTCGCTGGCCCAGCACCAACGCGGGTCCACGAGAGGGCT # Right flank : CGGGCCGATCGAGGGGGCGGTGGGCCTCATCCCCGGGCCGCCTTCGCTGCGGACATCGGGAAAGGTCCCCTGGCTCATGAGTTTCGACTTGCCAGCAGACTTGTAGCCGAACCGTCAGCGCAACGATCCGGACAGCGGCACCCCGAGGTACGGCCCATTCTCATCGAAGCGTTTGACCGGGCGCTTCCCGGGCTTCAGAGCGCGGGTTTCGGCGTCGGTGAGTGGCTGTAGCGGGCTAACCCCTTTTCCGGGTCGACGTATTACCCCGGAAGTTATCCCTCTCACTCGGGGTAACTCGAACGCCCGCTTTAGACCTCTTGCGATACTGCAGGGCACAAAAAAGCCGCTTTTTCAGCGGCTTGGGTACTTCTTTGGGCCTTGCTGGAAGGTGAAATGGTGGCCCGGGACTCCACCGAAAACCCACGGCAACACATTGATAACAATACCTTTGTGAGAGACCAAGAAAATCTGTTACCCCTCTTGTTACCCCTCCGATTTCC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGATCCCCGGCCAAACGCCGGGGTGGAATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-16.80,-15.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 2 1094479-1092914 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007029.1 Thioalkalivibrio paradoxus ARh 1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ===================================== ================== 1094478 28 85.7 36 A..AGG...................... CGTGAAGGGTATTAACTGCAACGTGAGCCGAATCAA 1094414 28 100.0 36 ............................ CTACCGCGTGCTGCGCTGCTGCATGGACCAGACCGG 1094350 28 100.0 36 ............................ GCGCAGCACCGAGATCCCCATCGACTACGAGCACCA 1094286 28 100.0 36 ............................ GTGCTCGGACCACTGGCGACGCGGCCACAGGGCCGC 1094222 28 100.0 36 ............................ TGGTCACCGTGCCCAAGGGCGTGGATCCGGGATTCG 1094158 28 100.0 36 ............................ AAGCTGCTGCCGGTATGCCGCCGCTTCCTCCTGCTC 1094094 28 100.0 36 ............................ CAGGATCGGGGAGGCGCTGGGCATTATCGCAGCGGC 1094030 28 100.0 36 ............................ CAATTTATCGGCACGGGTGAGGAGTGCGTGGGCCAA 1093966 28 100.0 36 ............................ ACGTCTCAACCTCCACCACCAGGATACGGTGCTCGT 1093902 28 100.0 37 ............................ TGGTTGGTCTCGCGCCGGAAAGCCCGCTGATGGATGC 1093837 28 100.0 37 ............................ CAGCTATCGCCGATCAGGAGCGAACCACCAACCCAGT 1093772 28 100.0 36 ............................ CTGACAGGCGGTGTCGTCACGCCGAATGGCGAGGAT 1093708 28 100.0 36 ............................ GGGCCTGAGCGTGCAGGCCGACGACACCGGGCGCGT 1093644 28 100.0 36 ............................ GTAGCTGCCGATCGGTCGGGCGTTGTTGAGCACCAG 1093580 28 100.0 36 ............................ GTACACCGGTGGGGTGGATACCGACCTCGAGATCGA 1093516 28 100.0 36 ............................ GGGATTCGAGGCCCAGGAAGCTCATGCGCACTCCGA 1093452 28 100.0 36 ............................ GAGTTCCGGACCGAACACCCGCAGATAGAACGCCAT 1093388 28 100.0 36 ............................ GCGCCCGTCGAGCCGGCACGGCGTTGCGGTGCAGCC 1093324 28 100.0 35 ............................ GATGCACAAACCTGGCATCGGACGGACCCTACGCT 1093261 28 100.0 36 ............................ CCGGGCGGTGCAGCTATTCGCCGACGCCCTGGCGGA 1093197 28 100.0 36 ............................ GCTCCGGCGGGCAGGCGTCCGGGTCGGTCGCGCGCA 1093133 28 100.0 36 ............................ GCCGAGGAAGAAGAAACCGGAGCCGGTGCCGCTGCT 1093069 28 100.0 36 ............................ CGGTGCGGGCGGGCCGAGGTCGGGGTACAGCTCGGA 1093005 28 100.0 36 ............................ ATCCCGCCGGAACTCGGCCAGGGTGGTGCCCTCGGT 1092941 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ===================================== ================== 25 28 99.4 36 CTCCTAACCCCTCATGGGGTGACAGGAC # Left flank : GCTGAGCGTGTAGCGCTCTTCCCGCTCGGTCATCGCCTGCATCAGCTTGTGCTTCAGCGCCCAGGCGGTGGGGTAGCTGACGCCCAAGTGCCGTTTCAGCGCCAACGACGCGATCCCGGTCTTGGCCTGGCTGACCAGGTAGATGGCCAGAAACCATGTGGTCAGCGGCAGCTTCGTCCCCTGCATCACGGTGCCGGCGATCAGCGAGGCCTGATGCCGGCAGGCATTGCACTGAAACACCTTGCGCGGGCTGCTGCGCAGGACACAGTGCGCGTGGCCGCCGCAGCGCGGACAGCGAAAGCCCTCCGGCCAGCGGACCCGCTCCAGCGCCGCTTCGCACTGGGCCTCCGTCCCGTACTGCGCAAGGAACTCCGGCATCGACATCCCCGGCTGAAACTGGATCCGATTCTGTGCCATGGTGCCACCCTCCGCTCGACGTGTAGCCTCAGCGTACGCCCGGTGGTGGCTCACAGAGTGATCCTGGCGGACTCTCGTTGCTA # Right flank : CCTTGGTTGGTCAACGGCTTTCGGGAAGCCATCCGGCCGCTGTGCCCGGGATTCCTGGGAAAACGGGCTCATTTCTACTACGTACCCCCCCTGCCCCGTGCACGATACCGCACCGTAGCTCACACGATGGTGGAGTTCATCGAATGGTGAAGGAGAGCATGGTCTTCAAGCGCGCCGTTGCCAGCGTTTTTCGCGAGTGTCGCCGCCTGGATGTTGTGGCGGTTCCTGGCCTTGAACTGCAAGATCCGGTCCTCCGGAATGGCGATTCGCGACAACCCGGCGCGAAGCTTACGATATTCGGATTCCGTAAGGTCTCCCGCAAACACAGAGTTCTGTTCGTGGGTGAGGAATCGAAGGAGAAATTTCTTGTAAACCTCGGTGCGATCCGCTTGCACGTCGTAGGCAATCAGGATGAACATCAGATTTTCCTGCGCCAGGGCCGATACTCGGCAATTCCGAGAAGATCGCGCTCCAGTGCGATGGCCTCCTGGCGCACGATT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTAACCCCTCATGGGGTGACAGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA // Array 3 1096753-1095571 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007029.1 Thioalkalivibrio paradoxus ARh 1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 1096752 28 100.0 37 ............................ GCAAGCAGCACATCCGCTTTCAGGGGCTCGATGTCTC 1096687 28 100.0 36 ............................ GCCAAAATTGGCGCTGGATAACAATAACGCGGCGGT 1096623 28 100.0 36 ............................ GGGGTCTCCCTTGGCCTGCGCGGCCTCCAGGTACTC 1096559 28 100.0 36 ............................ CGAGGTGGAGCGGGTCGTGAAGGAGCGGGAGAAGGC 1096495 28 96.4 36 ..................A......... TTCCCATTGCGCCCGCCTCCGAGTGGAATCGAAACC 1096431 28 96.4 36 ........T................... GCGAAGGCGTCATTTCCGGGGCGGACCCCGGGCACG 1096367 28 100.0 36 ............................ CACATCGACGCGCTGCAACGCGGGGCCGTTGAATGT 1096303 28 100.0 36 ............................ CGCCGAAATCGTCGCGTCGGCCGTCGCCGGCATGCA 1096239 28 100.0 36 ............................ CAGCAACCGCCGGCGCATGATGTGCCGCTCGAACAG 1096175 28 100.0 36 ............................ CGTCGAGAACGGCATGATCTGGCGGCCGACCGAGGT 1096111 28 100.0 36 ............................ GCAGACGATGGACCCCGAGTGGCTCCGCCACATGAT 1096047 28 100.0 36 ............................ GATTGCCCATGCCACCGGCTCCCGCATCGCCGCTTC 1095983 28 100.0 36 ............................ GGCGCTCGGCGTCGATCTCGAGGATACCGTTGCGCT 1095919 28 100.0 36 ............................ GAGTTACGCGGCCCAGCGCCGCGACTGCCGGGCAAC 1095855 28 100.0 36 ............................ CCCCTCGTCGGTCCCGGCCGGCCAGGTCTTCGCCCA 1095791 28 100.0 36 ............................ GAGCTGCGTCAGCATCCCGACCCCGTAGGCGTCGCC 1095727 28 100.0 35 ............................ GGCCCCACAAACCGCAGTCACCGAACCGTCGCCGT 1095664 28 100.0 38 ............................ CTCGCGGCTGTACCGGCCGTCATCGTCGAACAGAAAAT 1095598 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================== ================== 19 28 99.6 36 CTCCTAACCCCTCATGGGGTGACAGGAC # Left flank : GCCCCTATTCCGCGCTTCGAGCAGTTTCTGCTCGGCTTCGAACGCTCCGCGGGAACGGTGACCCATGCCACCCACGGGGCCCAGTGGTTTGCGAACGCGCGGTATCCGGGGCAATGGGAATTCGATCTGCCCGAAGACTGGCTTGCCTATCCCGGGCGGTATCAGTCCTGGAGCCCCTGGATTCCCGAGCGCCGCGTGATCCACCGCCGCGGCCAGTTGCTGCTGATTCAGCCCGGCGGCCGCGAACAACGACTCGAACCGCTCGAGCATACCGGGTGGTTCCGCGTTCCCGAGGCTCAAGGCGGAGAAACCGTCCATTTTCGCGATGTCGTGGATGGGCGTGCACTTCGAGCCAACGTGGACGGCGTAGATCTATACCGTAGCGCCCTGCGCTGACGGCTTGCCGCGGGTAACACTCACGACTGCCGGCTGGGAAGGGGTCACCCTTCAGATTCACCACGCGTTGGAACCATGCAGATTTCCTACGTCGACGGCGCGCT # Right flank : CGATGACGCCGAGCAGGGCAGGCCGCAGGCCCCGAACTCCTAACCCCTCACCTGATTAGCAACGAGAGTCAGCCAGCCTCAGGGACTGCTCGGGCAGCGGCCTGCAGTGCGCCGCGGCAACCAGGAGGCGTCCCGGCAATGCGGCTAGATCAAAGCGCCGGTTGAACCGGTAGGCGAAAGCCGCGAGGTAGCGGGGGGCATACTTGGAGAACGCAAAGGCATGGTAACTCCCGCTCAGGCTGGTCTTCAGGTTGCCGAGCACTGTGTTGACCCAGTGGAATTGGGGCAGGTCCTTGGGTTTGCGCCCGGCCACGACCGTCGGTTGGTGCCGGCAACCGGCCATCGTGACCGCGTTGAAACACGCGAGACCATCGGAGTGGACCGTGCTGCCCGGGGTCAGATACGCGCGGGCCCACTCGGTGATGGCCTGGAAGCTGAATCCCGCCACCGGCGTCAGCTTGACCCGCAGGGGGCAGCCCGCGTCGGTCAGCGACACCGCC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCTAACCCCTCATGGGGTGACAGGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.10,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA // Array 4 1959621-1958603 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007029.1 Thioalkalivibrio paradoxus ARh 1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 1959620 37 100.0 33 ..................................... CTTGGCGCTGGTCGCCTTGGCGCTGGTCGCCTT 1959550 37 100.0 34 ..................................... ACCGCAAGGGCCGCAAGGGTGTAGGACCGCTTGT 1959479 37 100.0 32 ..................................... TTCAGTGGTTGTCATGCCACACCTCCCAAATG 1959410 37 100.0 33 ..................................... ACTAGCCCCACTCCTCATTCGCGATCATCTGAG 1959340 37 100.0 34 ..................................... ATGTCGGGTGCGAGCAGGTTTTCCAGGCGCTCGA 1959269 37 100.0 32 ..................................... CCTTCGAGCCATCGCGTACCGCGTCCACCTGA 1959200 37 100.0 34 ..................................... TTTGTTATCGCAGGCCGCTTTGCTGTCATCCCAG 1959129 37 100.0 33 ..................................... TCCATTAGTGCCACCGGTGGGTCGGTCGCACGC 1959059 37 100.0 33 ..................................... GACTGAATCCGATGGTGTACTCGGTGCCGTTGA 1958989 37 100.0 34 ..................................... CTAGGAGTACTCAGGCATGAGCTCCCAGACCGTT 1958918 37 100.0 33 ..................................... TCCCGCAGCCGTGGCGGCTTTCTCGGCACCGAC 1958848 37 100.0 32 ..................................... CTTGGCAATCCATTCCTTCGTGCGCCGCCAAT 1958779 37 100.0 34 ..................................... GGCGTCGCGGACGACGAAAGCGCGGAGGCTGCTG 1958708 37 100.0 32 ..................................... GTTGTGGCATGGGTAGTGTGCGGGGGCACCGC 1958639 37 75.7 0 ...........C............T..CCCG..G.GT | ========== ====== ====== ====== ===================================== ================================== ================== 15 37 98.4 33 GTCAGAACGACTTCCCTGATGAAGAAGGGATTAAGAC # Left flank : GCAGCATCTCGGCGACTTGAAGCGCCACCTGCGCACGGAGCTTGGATCGTGGCACTGAACGCACCGCGCGCGTGGCTTATCTGCTACGACATCGCCGACCCGCGGCGGCTGATCCGGCTGCATCGCTTCCTGAAGCGGTTTGCCCAGCCGGTGCAATACTCGGTGTTCTACTACGAGGGCAGCAGCGCCCAGCTCGCGCGCTGTTTGCACGACATCGCGGGTCGCATCGACCACCGCGAAGACGACGTGCGGGCCTATCCGATTCCAAACCCCGCCCAGGTCGACACGCTCGGCCGCGGCGCGCTTCCGGACGGCGCGTTGCTTCACTCCCACGAGAACCCGGGCCTGGTCACCTTGCTGCAGGCGCTGGCCGAGTGAGCTAAGATTGCCCGGAACGTGCCCGAATCGCCGTCAAGAAATGCATCAGTCTGCCACCGCCCCCGAAACCCGCGAACCCCATCTGCAAGTGGTTGTTCTAAAAGGTGTTTTCAGGCCATGCA # Right flank : GGAAGAGCGCAGCGTCATCCGCCGTGCGGCGTTCGTGCTGCCCGGGCGCTGGCGGCGGCCTCAGCGCTGGATGGCGGATGACGGCCTTCGGCCTTTTCCGCCCCGCGTCCCTCTCATCATCGGGGTGACCGCCTCCGGTGAGATCCCCTTGCTTCCGGGCGAACGACGCTGGCGAGGTGGGGAATCACACGGCTTGACGGGGTGTCGCGTCGGTCGGAACATGGGCGCGTAGAAGAGATTTCGGATCCCCGGAACCGACAGGGAGTGTTTGATGAAGCCCATGATCCGGATGGACGACGCTGGTACCGCGGGCCGTGTCGGAATGACGCTGGCCACGATCGCGTACAAGCCCCTGGATCGTGTCGCGGACGCGCTGGCAAACCCGGATCTGGCGACGCAGGGGCGTTGGGCGCTCGAATGGCGGGTCTGGGGCGATGGATGCCAGATGTTCGTTGCGCGCGACGATCTGACGGGGCAGATCGCGATCTCGATTCGGGGCT # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAACGACTTCCCTGATGAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA // Array 5 1977688-1979126 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007029.1 Thioalkalivibrio paradoxus ARh 1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 1977688 37 97.3 34 .....C............................... GATTGAACGCGGCTATGTATGCGAATACTGCGAA 1977759 37 97.3 35 ....A................................ TGGCCAAGATGACGCCGGGCCAGCGCGCCAAGGCG 1977831 37 100.0 33 ..................................... CTTTAGATACGAAGAACTGGAGCCATTAGATGA 1977901 37 100.0 33 ..................................... TGGGCAACACCAGCACAAGGCGGAATTCCAAGC 1977971 37 100.0 34 ..................................... CTTGGGCAGTGGGCCGGTGTAGACCACCTTACCA 1978042 37 100.0 33 ..................................... CCAAAAGCTGGGTCAGGGACATCCTGACCTTCC 1978112 37 100.0 33 ..................................... GATGCCGAGCGCACGGCAGACTGGATGGTAAAG 1978182 37 100.0 33 ..................................... TCGATCTCGTAGGACGGCCAGATAGCCCAACGT 1978252 37 100.0 33 ..................................... GTGACCTGTTCGATCACAAGCTGGACGCGAATG 1978322 37 100.0 33 ..................................... TGCTGGCGAAGTTCAACCAGAAAGAGGTATAGA 1978392 37 100.0 34 ..................................... ATCAGTCGACCGCGCTGATGCACGTCATCGAGCG 1978463 37 100.0 35 ..................................... GTCGCAGCCTCAACGCCTATGCTGGCATCAACTGG 1978535 37 100.0 33 ..................................... ATCCGCCACCTATTATATGCCCGAGTCGGGTAG 1978605 37 100.0 32 ..................................... GGCCGGCAATGAAGCGCAAGTCGCCGAGATCG 1978674 37 100.0 32 ..................................... AAACCCGGCGGACGTACATGCTCAAACTGGCG 1978743 37 100.0 31 ..................................... CGGGGTCGAGTACTGGATCGCGGCCTGGATC 1978811 37 100.0 33 ..................................... GCTACTACGACGCGCAAACCCACGAGTTCGTAG 1978881 37 100.0 32 ..................................... TTCTATGAGGGTGAGGATGACCCCGCGAACTT 1978950 37 100.0 33 ..................................... ACGTCGAGTCGGCCAGCATCGACAGAAAGCGAA 1979020 37 100.0 31 ..................................... GTATTCCCCGCTCGGGCTGGCCGCGCGGATC 1979088 37 91.9 0 .............................CC....T. | CC [1979116] ========== ====== ====== ====== ===================================== =================================== ================== 21 37 99.4 33 GTCTTAATCCCTTCTTCATCAGGGAAGTCGTTCTGAC # Left flank : CACTGCACGATTGCCTCGCGCCGGCCGCCCGGGTCGCGGGCGGGTTCCTGGGTTGGCGCGGGCCTGGGGTTAGCGTCCGGAGCGGTCTCCCCCGCTCTACCAAGATCCTGTTGCTCCCAGTACGACTCGTCCGCCTCGAGCTCCGATGGTTCCGGCCCCGCTTCCTCTTCCACGTGCGCGTAGTCGGGCTCCAGGTATCCGTAGTCCGGCTCGAGCTGGTGATCGTCAGGGCCACCTAGGTGTTCTTCCCAGAACTCGGAATCGTAGTCGTCGAACTGGTCGGTCCAATCAACGTTCTGAGGGTTCTCCCCTGGATCCAACATCTGTCGTTACCTCGCGTGAGCCAGGCTCTGCCGTTGCGGGCGGAACCCTTGGTTCTGTTGGCGACGAATGTAACGACACGGGTCCGATACTGACCCACTTGGCAAGCTTGCCACGCTTCGGCGCGATTCACCCAGGCGAGTGGCACGGGAAGCAGGGCAAGAGAATTCCTGAGTACC # Right flank : CAGCATAGAAGTCCGCTGGATTGGACGCAGTAAACTTAACCCTCGAGGGGGCGGAGAGAGCGGATGGAATGCCACGGTACAGCGAAGAGTTCAAAGCCAAGGTGGTCGAGAAGATGATGCCGCCCAATGCCCGGGCGGTGGCCGACGTGCACCGGGAGACGGGGGTGTCGGAACCCACCCTGTATGCCTGGCGCCGGGAGTTCCAGGACCGGGGGCATGCGGTGCCGGCGGATCCGGCGAACCCGGAATCCTGGAGTGGCCGGGACAAGCTCGCGGTGGTGATCGAAACCGCCGCGCTGAATGAGCAGGCGCTCTCGGAGTACTGCCGGTGCAAGGGTCTGTATCCCGAGCAGATCGAGCGCTGGAAGGAAGCGGCCATGGCCGGCAGCGCCGATCCCCAGCGGCTGACCCGGGACGAGCGTGCCGCCTGGCAGCAGGAGAAGAAGCGCGTGCGCGACCTGGAGCGCGAGCTGCGCCGGAAAGAGAAAGCCCTGGCCGAG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCCTTCTTCATCAGGGAAGTCGTTCTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 6 1981652-1980840 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007029.1 Thioalkalivibrio paradoxus ARh 1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================== ================== 1981651 37 100.0 33 ..................................... GTTCGGCGCGCAGTTCCTCGACCCTTGCAGAAA 1981581 37 100.0 34 ..................................... CGCCGCCGTGGTATCCCCGCGCCGTGGGATCTTC 1981510 37 100.0 34 ..................................... CTCGAGTCCGCGCTGGCTGTTGCCAGTGGCGAGG 1981439 37 100.0 33 ..................................... GCCTCGATCGCGTCCTGGCGAGACCATTGGGAC 1981369 37 100.0 33 ..................................... CCAGCGCCCGAAATACGCGCGCGTGCAACAACT 1981299 37 100.0 34 ..................................... GAGATTCTGGCTGAGCGCGCAACCTTTCAACCAG 1981228 37 100.0 34 ..................................... GATCGTTTGCGAATGCTTCGGCGCGCGCCTTGTT 1981157 37 100.0 33 ..................................... CCTTCCTGGCCATCCCATTGAATCATCCCTGCC 1981087 37 100.0 34 ..................................... TTCTCGCCTTCCGGCTCGTTGTCCTCGTCGGACA 1981016 37 100.0 34 ..................................... GCATTGTCGGCCAGCGACTGCACAAGTTCTACAT 1980945 37 100.0 32 ..................................... ACCGGCAGGAGCCAATTCGTTCGTCGGACACG 1980876 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ================================== ================== 12 37 100.0 34 GTCAGAACGACTTCCCTGATGAAGAAGGGATTAAGAC # Left flank : GAGCGCGCGCAGCGGCTGGCCTCGATGAGCGAAGACGAACGTCAGATCGACGCGCTGCTGAGCACTCTGGCGCAGGAACAGGCTGCCGGCACGCTCGCCCCGAGCAGCCAAGTCGCCAGTGCCCGGGTCGATCTACTCAGAACGGCGTTGGACTGGGGTTCCGAGGAACTGCGCCGGCAAGCAGCGGACGCAATACAGCAAACGGTACGCGCGCTGCCGTGGAGCAAGAAATCCCGGGCCGAACGCCAGAACGACCTCGCACGCCTGCGCCAGCCGAAGGATGGCTGACCAAGCTGGGCTCGGTGCCCGTGACAGACACAGGAGAAGCTGTACCTCCGTGCGGGCCCCGGGCCGCGGATGCAGCCCCGCGCGCGGTAGGCTACCATCGTGCACGAGGCCCGGATTCAGACGCTCGCAAAGGCATCAGTCCCCGGCACCCAGTGAAACCCGCGAACCCCCTTTGCAAGCCGTTGAATTCATATGTGTTTTCGAGGCATGCA # Right flank : GTTGATCCAGTATTCGAAGTTCGTCATGGCTGCGTCAGAACGACTTCGGTGTTTGTCAACGTAGTTGTCCGCTTTTTCATGCCGCCTGAGCGACCATCAGGGCTGGCGTTTGGGCATGTTCCTTCGGTGGGTTGAGCCAGACGTGATCGATCGGTGTCCAGTTGCGCGTGTGCCGCGACCAGCGTGTCGGGTTGGCGCGTTGGGCGTCTTGGTACACCCGGTGCCGGTGCGCCAGGATCGCGATGTCCTCCCCGCGATGACGCTGGCCGGGGGTGACGAAGCGGATCTTGCTGTGGCGATGTTCCTCGTTGTACCAGTGGACGAAGCGCGCGACCCAAGCGCGGGCGTCGGCGAGGCTGGCAAACGGCTGAGGCGGAAAGGCCGGCGTGTATTTCAAGGTCCGGAACAGGCTTTCCGCGTAGGGGTTGTCGTCGCTCACCGAGGGGCGACTGAAGGACGGGACGACACCCAGGCGCTGCAAGGTGCTGAGCATGGTGGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAACGACTTCCCTGATGAAGAAGGGATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-7.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 7 2975611-2975043 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007029.1 Thioalkalivibrio paradoxus ARh 1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 2975610 28 100.0 32 ............................ TGGCTGGTGCCGCCGGTCCCGTTGTAGACGTA 2975550 28 100.0 32 ............................ CTGAAGCGAAGGGCCCGTGGGTCGCGCTCCCA 2975490 28 100.0 32 ............................ TCGCGGAGGTGCTCGAGACCGAGGAGCGCATC 2975430 28 100.0 32 ............................ ATCGGCGCCACCGGACCATTGCGCATCGCTTG 2975370 28 100.0 32 ............................ GCTGAGAATGTCGATCTCAGCGTTCGTGTAAA 2975310 28 100.0 32 ............................ ACTTCATCGACGCCCTGGATGGCGTGATCGGC 2975250 28 100.0 32 ............................ ATTCGCCGGCGAAGGCGTTCGAGGACGGGTAC 2975190 28 100.0 32 ............................ CCGCCCAACTCATGCGGCCTCGCGTACGGGAA 2975130 28 100.0 32 ............................ ACGAGGGAACCTTCCGTGTGACTGATCCGCAC 2975070 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 10 28 100.0 32 GTTCGCTGCCGCGCAGGCAGCTCAGAAA # Left flank : CTCGCGCTCCAGGTCGCGCACGCGCTTCTTCTCCTGCTGCCAGGCGGCACGCTCGTCCCGGGTCAGCCGCTGGGGATCGGCGCTGCCGGCCATGGCCGCTTCCTTCCAGCGCTCGATCTGCTCGGGATACAGACCCTTGCACCGGCAGTACTCCGAGAGCGCCTGCTCATTCAGCGCGGCGGTTTCGATCACCACCGCGAGCTTGTCCCGGCCACTCCAGGATTCCGGGTTCGCCGGATCCGCCGGCACCGCATGCCCCCGGTCCTGGAACTCCCGGCGCCAGGCATACAGGGTGGGTTCCGACACCCCCGTCTCCCGGTGCACGTCGGCCACCGCCCGGGCATTGGGCGGCATCATCTTCTCGACCACCTTGGCTTTGAACTCTTCGCTGTACCGTGGCATTCCATCCGCTCTCTCCGCCCCCTCGAGGGTTAAGTTTACTGCGTCCAATCCAGCGGACTTCTATGCTGACAGAGGGGGCTTCCTTGCGCCCATAAGAA # Right flank : ATGTACCGGACAACATCCGGCTTCGGGGTATCGTTCGCGCTGGCGTCGCCGCCTTCGAGCAGGGTGTCGGCGAGGTCGCGCTTGCGGGCGTGCAGTTCGATGATGCGTTCCTCGATGCTGCCGCGCATCACCAGGCGGTAGACGGTGACCGGGCGTTGCTGGCCGATGCGGTGGGCGCGGTCGGAGGCCTGGTCTTCGACCGCGGGGTTCCACCAGGGGTCGAGGTGGATCACGTAGTCGGCGAAGGGGTTGAGCCGAAATAATGCCAAGAATAACTCGTGAACGGTTTGGTGGAGAAAGGAAAGACCTGCCGCCCCGATCGGAACACGGCGTTACACCCGCTTCACTTCGTCCAGCAGTTCCGGATGACGGTCCAGCAGCCGCAGAAACTTCACCACGGCTCGGGGCGGATCCACTTCCCCCCGCTCGTACCGGCTGAAAGCGTTCACGCCACCGCCGAAGACCTCGGCGGCTGCTTTCTGGGTCAGCTTCAGCCGGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 8 2982938-2977326 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP007029.1 Thioalkalivibrio paradoxus ARh 1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2982937 28 100.0 32 ............................ ATGGCCTGGAACAGCTCGGATTGCACGAGGCT 2982877 28 100.0 32 ............................ TGCTGGGCGAGTGCGAGCGCCCTGCTCCAGCG 2982817 28 100.0 32 ............................ ATATGATTCGTGAAACTAGCAGATCATGCATT 2982757 28 100.0 32 ............................ CGCGGCGCATCCTGCACGAGCTCGAACCCCGC 2982697 28 100.0 32 ............................ CAACACCGGGCGCCGCGTCGTCGCGCTGAGTT 2982637 28 100.0 32 ............................ TGGTCGGGGAAGTGCTTGCGGATGAGTCGCAC 2982577 28 100.0 32 ............................ ATCAGGCGGTCGGCCAGGATGCTGGGGACCGC 2982517 28 100.0 32 ............................ TGTCGCTCGCCCAGGCCCAGGCCGGCGCCACC 2982457 28 100.0 32 ............................ ACGTACTCCGCCTGATGGCGGGCATATCCTTT 2982397 28 96.4 32 A........................... TGCACGAGCTCGAACCCCGCTATCTGCGCGCC 2982337 28 100.0 32 ............................ ATGAGCTGCTTGAGCTCGCGGATGCGCCGGGC 2982277 28 100.0 32 ............................ TGGCGCACTACGTGGCGATACACACCGGGCCA 2982217 28 100.0 32 ............................ GTTGGGGGTGGACACCACGCGCAGCTTCAGTC 2982157 28 100.0 32 ............................ TGCCGCGCTACCCAAGCTTGCCCTGGGAGTGG 2982097 28 100.0 32 ............................ TCGTGCCCGCCAAGCACACAACGCACGTCGTG 2982037 28 100.0 32 ............................ TCCAGGAGCGCCCTCGGTAGGGGTTAGGCCGG 2981977 28 100.0 32 ............................ TTGTACCGCCGAAACTCAAGAGCCAGATCGCC 2981917 28 100.0 32 ............................ GAAGACGGGCCGCCAGCCGCAGTTCTGATCCG 2981857 28 100.0 32 ............................ GCTGTCGCTGCTGGCCGGCGTCCACGCAAGCG 2981797 28 100.0 32 ............................ TGCAACCCGCTTCATCGTTGTGGCGCTGATAT 2981737 28 100.0 32 ............................ TTCAGCGCCTTGAGTCGGCGGGATACCTCGGC 2981677 28 100.0 32 ............................ ACCACGGAGGACGGCTGCACTTGTGCGAACGG 2981617 28 100.0 32 ............................ TGGCCGGGCAAGCGAACTGCTCCCGAACAACG 2981557 28 100.0 32 ............................ TCAGTGAGGGACTGAGCTACGACGACGCATTC 2981497 28 100.0 32 ............................ TGACCGCCACGGCGCATCTGACGATGCTCGAG 2981437 28 100.0 32 ............................ TACGTCGTCGAGTCGCCCTGATCGGGGCAGAA 2981377 28 100.0 32 ............................ TCTCCGCCGAATTCGTCGAGAACTACACCGAC 2981317 28 100.0 32 ............................ TCCGGGGCATCTGGTCCGAGCTCGAGCAATCC 2981257 28 100.0 32 ............................ CAGGACGGCGACAAGGCCCGCGTGATCATCCC 2981197 28 100.0 32 ............................ TTCGCGGAGGCCGTCGAGCAGGGCCTTTACCG 2981137 28 100.0 31 ............................ CACGCCTGGTTCCGCCTGCACCCCGAGCGGC 2981078 28 100.0 32 ............................ ATGCTGTTGTGGGGCGATCGCGTGCGCATCAT 2981018 28 100.0 32 ............................ TCGGGCATATTGTCCTTGCGAGCGGAGGAACT 2980958 28 100.0 32 ............................ CTAAGTCAGGAGTACTGCATGCGCCGCACAAG 2980898 28 100.0 33 ............................ ATGTAGCGTCCGCCTGCTTTGCGTCCGGGTGTT 2980837 28 100.0 32 ............................ ACGAAGGGGCGCGGTGGGATCCCACGGCGCGA 2980777 28 100.0 32 ............................ TCATCGAGGAGTTGCTGCGCGGTGCGCTGCTG 2980717 28 100.0 32 ............................ AGCTCGAAGCGCCCCAGCACCCCGGGTCCGTG 2980657 28 100.0 32 ............................ ATTTCCGATGCGCGATCCGAAACCCCTTCGAT 2980597 28 100.0 32 ............................ TGGGCCTGAGCCGAGCCGTGAGCCTCGAGCAC 2980537 28 100.0 33 ............................ CGCGTGCTGCGCCTCAAGGGCGACCGCTTCCAG 2980476 28 100.0 32 ............................ AGCTCGTTCTGCCGGGCGGAGAACTCCGCCTC 2980416 28 100.0 32 ............................ GTTGCCGGGTCCGGGCCCGGCGGAATCACCAG 2980356 28 100.0 32 ............................ ACCAGCCGAGAAACGTCGTGGCGGGGCTCGCT 2980296 28 100.0 32 ............................ TGGTGGCGCAGCGGCCGCTATGACCCGGTGAC 2980236 28 100.0 32 ............................ TCCTGCCGAACCTGCAGCGCGTCGATGCGCGG 2980176 28 100.0 32 ............................ TCGCCCCGATGCACCACGGTCGCGCGCGTGGT 2980116 28 100.0 32 ............................ ACGAGAATGCAGTGTCCATCTCAGATGTTCGG 2980056 28 100.0 32 ............................ CCGGGCCGAGGCGGCCAGCGGCACGCCGACCC 2979996 28 100.0 32 ............................ TGGTGGCGCAGCGGCCGCTATGACCCGGTGAC 2979936 28 100.0 32 ............................ ACCACCGTTTGCGCGCGCTGCATGGCCACCGT 2979876 28 100.0 32 ............................ TGGCTGTCGGTCAGGCAGATGCCGGGCATCAG 2979816 28 96.4 32 ..................G......... ATGCGTTACACGCAGACAAAAAATAATTTTCA 2979756 28 100.0 32 ............................ CGTGAGTAGACGTGTGCACCAGCACAGATCGG 2979696 28 100.0 32 ............................ TGGTGGATCTGCGCGGCGGCCCGGGCGGCGCT 2979636 28 100.0 32 ............................ GAAGGCCGTAGCCGCCGGCCAACCGGAGCAAC 2979576 28 100.0 32 ............................ TTGTAGGCGTCGCCCGTGATGTGTGCGTAAAA 2979516 28 100.0 32 ............................ TGCTCGACGTGCAGGAAGTCGAAGACCTCGAA 2979456 28 100.0 32 ............................ ATCGACCCCGAACCGCCGGAATGCATCGAGGA 2979396 28 100.0 32 ............................ ATGAGCGGGGGCCTCCTCTACGCCTACCAGAT 2979336 28 100.0 32 ............................ GCTCCAGGCGGATGATCGCAGCGCGGGAAACG 2979276 28 100.0 32 ............................ ATACGCCGATCCGCGCATGGCTTGAGTGTGAT 2979216 28 100.0 33 ............................ GCGTGCTGGGTCCGCGAGATTGCGGCCCTTCAG 2979155 28 100.0 32 ............................ TGCGCGCGGAACCAAGCAATCTTGTCCTTCTG 2979095 28 100.0 32 ............................ TGCGATGGGTCGGTGGGCTCCAGCCACTCATA 2979035 28 100.0 32 ............................ GCAGGCGGTTCAGTTCGGCGGACAACTCCGCG 2978975 28 100.0 32 ............................ ACCCACCAGCACCGCCCAAAACCGCCGTATCC 2978915 28 100.0 32 ............................ TCGACGCGTTCCGTCTCCGCTTCCAGCAGGAC 2978855 28 100.0 32 ............................ TCTGCTCAATTCGGCGCACCGCCTCGTCATAC 2978795 28 100.0 32 ............................ CGAGGATGACTTCGCAACGCGCATGGGCAAGT 2978735 28 100.0 32 ............................ TGCTCGCGATCGGAGCGCGCAACGTGCTGGTG 2978675 28 100.0 32 ............................ TCGAGGTATTCGATGCGCATGCCCTCGGGGAT 2978615 28 100.0 33 ............................ CTGCGGCACAAGGCCGATTTACCCCTGCATTAC 2978554 28 100.0 32 ............................ TGCAGATGCTCGACCTGGACGGCGTCGTGCAG 2978494 28 100.0 32 ............................ TCCAGCGTTTGGACCTGGTCGACGATCTCCCG 2978434 28 100.0 32 ............................ CATGAGGCCGTAGAGCGGGTGTTCTCGAAAAT 2978374 28 100.0 32 ............................ ATCACGCGCCGGCATTCGGCGGCGATCGCGTC 2978314 28 100.0 32 ............................ ATCGAGAGCAGGAGTTCGATTTTGCTGAAATC 2978254 28 100.0 32 ............................ CCTTCCTCGCTCGCCGGGGCGTCGGGCCCTTG 2978194 28 100.0 32 ............................ TCGATGAGCGCGTCGATGTTCGCCTCGAGAAA 2978134 28 100.0 33 ............................ GCAGTGATCACAATATAGTTCGGAGTCTTCCCA 2978073 28 100.0 32 ............................ TCGGAGAGGTAGTCAAAAAGCGCGCGAAGCCC 2978013 28 100.0 32 ............................ TTTGCCGGCTTCGGCTTCCCTCATCCGCTCCC 2977953 28 100.0 32 ............................ TTATTCATCTCGCAACGGCGCGAAGAGAAAAA 2977893 28 100.0 32 ............................ TCGGCAAGCGCGTGCAGATGGCCGCCGAGCTC 2977833 28 100.0 32 ............................ ACACCCACGAACACGGGGCCGCCGGCGTACTG 2977773 28 100.0 32 ............................ AGCCCGCCACCCCGCCGAACATTTCGGTTTCC 2977713 28 100.0 32 ............................ TCTAGCTCGTCTCGCCTGTACTCCCGAGGTTC 2977653 28 100.0 32 ............................ TCGTGCAGGTGCGCGCGGATCGCCGACACCGG 2977593 28 100.0 32 ............................ TACGCCCCGGGCGGGGATGATGTGGCACCGAT 2977533 28 100.0 32 ............................ AAACACCCTCTTCGCCGTTGGCGAACAGCGCC 2977473 28 100.0 32 ............................ TCGTTGTCCTCGCCGTTCGGCGTGATCGCGCC 2977413 28 100.0 32 ............................ AAAACCTCGTCAATCAGATTCAGGTTCTACTA 2977353 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 94 28 99.9 32 GTTCGCTGCCGCGCAGGCAGCTCAGAAA # Left flank : GCATCGAAACACTGATGCAGGAGGAATGGCTGGGCGGTATGCGGGGCCAACTGGAAATCGCCCCTCTTCGCGCGATCCCGGCCGAAGTCTCGCACAGAGGCGTCCGCCGCCGGCAATACAAGACCAACGTCGAACGGCTTCGACGACGGCGCATGCGCCGACACGGAGAAACCCACGAAGAGGCCCGTGAGCGTATCCCGGACACCGTTGCTCGCAAGGTGAAGACCCCGTTCCTCACCGTGTACAGCAGCAGCTCCGGCCAGCGCTTCAGCCTTTTCATCGAGCACGAACCAGTCCAGGCTCGCCCCGTGGTGGGCGCGTTCAACAGCTACGGGATCAGCCGGGACGCCACCATTCCGTGGTTTTGACCCTTTTTTCCAAGTGGCTCAGCGGGCGCTTGAAAAATCAACACGTTATAATCCTATGGGCCCAATTGGGTGAAACGTGCAGTGAGCCGATTTATTCTTTAACAATCAGGAATATAGAGAAGTAGAGCGCTA # Right flank : TGCTTGTTGGCGCTTCCGGTGTTTGTCAACGTAGTTGTCCGCTTTTTCATGCCGCCTGAGCGACCATCAGGGCTGGCGTTTGGGCATGTTCCTTCGGTGGGTTGAGCCAGACGTGATCGATCGGTGTCCAGTTGCGCGTGTGCCGCGACCAGCGTGTCGGGTTGGCGCGTTGGGCGTCTTGGTACACCCGGTGCCGGTGCGCCAGGATCGCGATGTCCTCCCCGCGATGACGCTGGCCGGGGGTGACGAAGCGGATCTTGCTGTGGCGATGTTCCTCGTTGTACCAGTGGACGAAGCGCGCGACCCAAGCGCGGGCGTCGGCGAGGCTGGCAAACGGCTGAGGCGGAAAGGCCGGCGTGTATTTCAAGGTCCGGAACAGGCTTTCCGCGTAGGGGTTGTCGTCGCTCACCGAGGGGCGACTGAAGGACGGGACGACACCCAGGCGCTGCAAGGTGCTGAGCATGGTGGCACCCTTCATGGGGCTGCCATTATCCGAGTGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCGCAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGCAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //