Array 1 74659-73713 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_POKI01000410.1 Streptococcus suis strain 1416 SS_1416_Contig410, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                     	Insertion/Deletion
==========	======	======	======	================================	====================================	==================
     74658	    32	 100.0	    33	................................	AAAATGTTTAGCACGTCTCCCAGAAAGCGAAAA   	
     74593	    32	 100.0	    35	................................	TATTGCCACAATGGCTGGGCTATTTAAAATGCCAG 	
     74526	    32	 100.0	    33	................................	TACCAAACTTGTGAGAATAGACTATCACAAACT   	
     74461	    32	 100.0	    36	................................	TATCATCACTTGCAAGAATAGCAACAGAACACTCTG	
     74393	    32	 100.0	    35	................................	AATATTTCCAATGTAACTATTCAAGTGTTCAACAC 	
     74326	    32	 100.0	    34	................................	ATTTTGAAATACTCCTTTCTTATTTTAAGAAAAC  	
     74260	    32	 100.0	    36	................................	TATCATCACTTGCAAGAATAGCAACAGAACACTCTG	
     74192	    32	 100.0	    35	................................	AATATTTCCAATGTAACTATTCAAGTGTTCAACAC 	
     74125	    32	 100.0	    33	................................	TTTACAAACTCCTACTATTGTTGGTGGAAAATC   	
     74060	    32	 100.0	    34	................................	ATTCGTATAATAAAATTCTCTATTAGAATAAACA  	
     73994	    32	  96.9	    33	....................A...........	ATCTAGTTCCGATTTTTTTATCCGTTTGGTACC   	
     73929	    32	 100.0	    34	................................	AAAATCATCGATTGACAGAGAACACTGGTCAAGC  	
     73863	    32	  96.9	    23	......................A.........	AACGTACCTGCTCGGACGGACCG             	Deletion [73809]
     73808	    32	  81.2	    32	.......T..T....A....AC..G.......	TGGACGGCACTATGGGAACACCTGGCACATCG    	
     73744	    32	  68.8	     0	....T..T..TTG..TA.A...A.G.......	|                                   	
==========	======	======	======	================================	====================================	==================
        15	    32	  96.3	    33	GTCGCACCCTACACGGGTGCGTGGATTGAAAT	                                    	       

# Left flank :   CAAAAGCTATTCGAGGCGAGTTGGATAGTTATCCTCCGTTTATGATATAGGAGCTATATTATGATGGTATTAGTGACCTATGATGTCAATACAGAAACAGTAGCTGGACGAAAGCGATTGAGAAAAGTAGCCAAGCTGTGCGTTGACTTTGGTCAACGTGTGCAACATTCTGTCTTCGAATGTTCAGTCACTCCAGCAGAATTTGTTGAAGTAAAGAATAGATTATTGGAAATCATTGACAAGGAACAGGACAGTATCCGCTTTTATATGCTAGGAAAAAACTGGCAAAATCGTGTGGAAACGATTGGGCGAGATACTAGTTATGATCCAGATCAAGGAGTCCTTCTGTTATAGATTATCTATGCGAATCGGACTTACTCATTAAATGTGAGGAGATTCGCGTGAAAAGCATATGAAAAAAAGTGAAAATAGAGTGAATTTATGGTATATTCTACATCTGTAGAAACTTTATTTTTTACAAAACAGTGTCAAAAGGCACT
# Right flank :  TGTTTTTTGCTTAACACAGTATATCTGGTATGGACGTGTTCGAAGTTTCCCTCCTTTAACTCATCTCCCCCACAATTTTCTAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGGATGATTGTTGGGCTGGGAACTGGTTCGACGGCTTACTATTTCGTGCAGGAGATTGGCCGCCGGGTTGCAGAAGAAGGGCTACAGATCACAGGCGTAACGACCTCTCATGCCACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACTTGACGGTGGATGGAGCAGATGAGGTTGATGGTGACTTCAATGGGATTAAAGGCGGTGGCGCAGCGCTTCTCATGGAGAAAGTGGTAGCAGTCAATAGCAAGGACTGCATCTGGAT

# Questionable array : NO	 Score: 9.03
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCGCACCCTACACGGGTGCGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     NA [7,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-6.70,-4.90] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [18-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [61.7-71.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,9.68   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
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