Array 1 23067-13783 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAACAF010000003.1 Neisseria flavescens strain N78, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 23066 32 96.9 32 T............................... AACGAGCGCGCCAAAGGCTTAATGCTGGCATA 23002 32 100.0 34 ................................ AGAACAATAAAGGAGGATTTGAACAATTAATAAA 22936 32 96.9 33 G............................... GGCATCTCTGAATCCTTTTATTTTACTTGGATT 22871 32 96.9 34 G............................... AACCCTTATAAAACTAAACAAAACGAAGCATTAA 22805 32 100.0 34 ................................ TCTTGTCTCTTATGAGGGCTTGAGTTTCGCAGTT 22739 32 96.9 33 G............................... TGTTTGGTAAGTCGCGCCGTATCAAGCATTTTT 22674 32 96.9 34 A............................... CGATTACACTCAACGCCTTTAATCATTTTCCAAG 22608 32 100.0 33 ................................ ATTCCCGATTTTGGATTGTTTTCGCAATAATCC 22543 32 100.0 33 ................................ TTTTTCTTTGCTGTCTTTGAACGCAGCAAAGGA 22478 32 96.9 33 A............................... CTGATACAACGGCGGAAACGGAATCAGGCTTTT 22413 32 96.9 33 A............................... CCCGAACTGTCTGTCTTTGCTGAAGAGAAAGTC 22348 32 96.9 33 A............................... TTCCATCAGACGTTGTACAATACGTCCCCATTT 22283 32 96.9 33 T............................... AAAAAAGACATACCTACCCCCACGGCGCAGCAG 22218 32 96.9 35 G............................... TAATAACCTGAATTTGAACACTATCTAGGGCAAAA 22151 32 96.9 33 A............................... GAAAACCTCTTGTCTGATTTTATGCGAACTGGA 22086 32 100.0 34 ................................ ATTGGATAAACAAAGAGGCGAAAAACGTTGGGAA 22020 32 96.9 33 T............................... AAGGCTTTGCGGTGTGCCTTGAATTGACCCCGA 21955 32 96.9 33 A............................... AGCCCTGATACCGCACTTAGTGCGCCGTACACC 21890 32 100.0 34 ................................ CCAAAATCTTTCATTGTGCGCATCTTCAAAGATG 21824 32 96.9 32 A............................... TAGTTGATGATGAATCACATGATTTTTATGTT 21760 32 96.9 33 T............................... CGCATAAGGTGCAACATGGGTTATCAGGTCGGT 21695 32 100.0 33 ................................ ATCTTCTCATGATTTGGCTAGAAAACTTGGTTG 21630 32 96.9 33 G............................... AATCAGACGGCCTTTTGAATCAGTTAAAAAGGT 21565 32 96.9 33 T............................... TATGAAGGTCGCCGGTCAGAATTCATCTGCTAC 21500 32 96.9 33 G............................... CGCCTACAAAAGACACCCTTTTTCCAACCAAAA 21435 32 96.9 32 G............................... CGGCTCAAAATCTTGACCGTTTTTTAATAAGT 21371 32 96.9 33 T............................... ATTGAAACATTTGGCCTTAACCATGTTGGCTTT 21306 32 96.9 32 T............................... AGTTTATGGGCAAAAACTGTCTGATCCCGCTC 21242 32 96.9 32 G............................... GGCGAACAAATAGGCACACAGATGATGTATGC 21178 32 100.0 33 ................................ TCATATTGGCCAGTTTTACGACTTTTAAGCAGA 21113 32 100.0 33 ................................ TACAAAGATAATCCAAGTTACAACACCCTTCGC 21048 32 96.9 33 A............................... TTTACCTGATACCCATCGCAATAGCTTTGCTTG 20983 32 96.9 33 G............................... CGGCTATGCACGCATACCGAAGCAGAACCTTTG 20918 32 100.0 32 ................................ GGCATGTTTGGCCAACATGAATTTTTATATGA 20854 32 96.9 33 A............................... CGGTTGTGGTGTGATAGTGTAGAAACAAATTGA 20789 32 100.0 33 ................................ TATTTAACGACGAAGCCCCTGCGATGGCTGAAT 20724 32 96.9 33 T............................... ATCTCGCCTTCGAGCTTGTCTAGCGTCTGCCCC 20659 32 96.9 32 A............................... TTGGCCGCCGCCAACGGCAATAAAATTTTTGA 20595 32 96.9 33 A............................... CGATGATTATGTCGGCCTGCTCCCCAGTCACGG 20530 32 100.0 32 ................................ TTCGCGGATTTCGCCGCCTTCGCCTGCTGTCA 20466 32 100.0 33 ................................ CCCTGCCTCTACATAGCCGTCATACATGAGATT 20401 32 96.9 33 T............................... AGCCGCATGATGTACTCGCCCCAATGGTTGCCG 20336 32 96.9 33 T............................... ATCGCCGAATACCAAACGCCTGCCGAGCGCGAC 20271 32 96.9 32 T............................... ATATCGCGGCAATATTGGGCGATTAGCCTGGC 20207 32 96.9 33 G............................... AAACCGAGGCAATGAAGGCTAGATATGAAGGCT 20142 32 96.9 32 A............................... CTCCGGTAACGTGTACCCAATTACAATTGCTT 20078 32 100.0 32 ................................ TTTGTCCATGTTGGCATTTTGCCGTTTTCAGA 20014 32 100.0 34 ................................ CAACCGATTAAGAAAGGTTGATTTATGCAAAAAG 19948 32 96.9 32 T............................... ACTGTACTTTGTGAGGTATTCCGCGTCTGTTA 19884 32 100.0 33 ................................ GGCCAAGACTCCAACGGCAATACAACGGCAGAA 19819 32 96.9 33 G............................... TTATTGGGAAAAACGTAAAAAGGAACTTGATAC 19754 32 96.9 32 T............................... ATTTACACACCCTTTTGCGCTATTACAACACA 19690 32 96.9 33 T............................... CAGAATTGACGATAAAGACGGAAAAAATTCCTG 19625 32 96.9 33 A............................... TAGCCGAAAAACCTGAAAGTAAACCCATTTATG 19560 32 96.9 33 A............................... TAAAACCCCAAGTAACATCGCCAACCTTTGCAG 19495 32 96.9 34 T............................... GGTCTTTTTGGCTTTATAAGGATTGAACGGCAAG 19429 32 100.0 33 ................................ AAATATGGAAAAATTCATGCATGATTTGAACCA 19364 32 96.9 32 A............................... ATTGATACCTTGAGCTTCACATTCAAAGAAAA 19300 32 96.9 34 A............................... GTATGAATCTCAGCCGATTTATACAAAGAGAATG 19234 32 100.0 32 ................................ CGTGGCGTCATGTTTATTGCTGAGTCTTTCGG 19170 32 100.0 33 ................................ ATCCTTTCGGTGCTTGTTTTGTTTCGATGGGTG 19105 32 96.9 33 T............................... ATTTTTTTACTCCTATTGGTTTGCCGACACTGC 19040 32 100.0 33 ................................ CATTTGATTGTGAACACACGCGAAGACATTCGC 18975 32 100.0 33 ................................ CCACATCATCCGCGCCGCCATCAGCGAGCGGAA 18910 32 100.0 33 ................................ TATGTCTTGGCTCGCTCTTGGTCGTAGAGCAGG 18845 32 100.0 33 ................................ GTCATATCGTCCAATTGGTGAATCTGAATAGCC 18780 32 96.9 33 T............................... CTGCTGTGCTGGAATTTTTATCTGACTTACGGA 18715 32 100.0 34 ................................ TAAATTAAATCCTGAAAATGACTACATTTGCCAA 18649 32 96.9 33 G............................... AATCACCAACTAACAACAAACGAAGGAAATTTG 18584 32 96.9 33 A............................... GGTATCAGGATAATAAAACGGCTGATTGAATCG 18519 32 100.0 33 ................................ ACGGATGATATGTATACTAATTTGGATGCGGAA 18454 32 96.9 33 T............................... AGCAAAACCCAATGTCTTGAGTTCGTAGAGAAC 18389 32 96.9 34 G............................... CGGCATTACTTTGGCGTTCGCGGCTACGGTCTTA 18323 32 96.9 33 G............................... TGTTTTAAGTGCTTACAGAAAAGGCGGTCAAAG 18258 32 100.0 34 ................................ AACGAGCGCGCGAAAGGCTTGATGTTGGCATATG 18192 32 100.0 32 ................................ TTTGGTCACAAAATCACGCGTCGCCAAAACGA 18128 32 100.0 33 ................................ CTGTTGTAACCTCTGTTGGCATGGCTTTGCTGT 18063 32 100.0 34 ................................ AATTAAATCCCACTTGTCAGAGGGCAGCTCCATG 17997 32 100.0 33 ................................ AGTATATAGCATATCTATTAGTTTGTGTAAAGA 17932 32 96.9 32 A............................... ATCCAAGAAATGACAACAAGCAACGGCCCACT 17868 32 96.9 33 G............................... TAGCCGAAAAACCTGAAAGTAAACCCATTTATG 17803 32 96.9 33 A............................... AGTCTATGAACTACGCCGCCAGCCGCCGCGCGG 17738 32 100.0 33 ................................ TACGGCAACGGAGGCGATGATGTTACCGCCGAT 17673 32 96.9 33 T............................... AAAAGTACCGCCATTTATCGAAGCCTTGGCATT 17608 32 96.9 33 A............................... AATCCTGTATCAATCTCGCCATACAGTTACCCT 17543 32 96.9 33 G............................... AATCCTGTATCAATCTCGCCATACAGTTACCCT 17478 32 96.9 32 G............................... CACGTCCTGGCGTTTGGCCAAGTGGTTACGAT 17414 32 96.9 34 A............................... CGAAAATTTCAAGGAACACGCTTGTGTCAGGGGA 17348 32 96.9 33 G............................... AATTGCCTTTGATTTCCCTTGTATGGATCCAGT 17283 32 96.9 32 G............................... AAGAAACCCACACCGACCCCCACGGCGCAGCA 17219 32 96.9 32 G............................... CGCCATTTCCCCAAAGCCGACCATGACGACGG 17155 32 100.0 33 ................................ CAGTCAAGTGAAATTGCGACTGATTATGTCGTA 17090 32 96.9 33 T............................... CGGTTTTTTTATCCAAAATGCCTATTTGTTTAG 17025 32 96.9 33 G............................... ATAAATAATCCTTTAAAACTAATACTTTAACAA 16960 32 96.9 33 G............................... ACAACAAATTCTGTATCTGATACCAATCCTTTA 16895 32 100.0 34 ................................ GTAAAGGAAAACATCATGAAATTGATGAATATTT 16829 32 96.9 34 G............................... TCTGATAATGATGACTTTTATTTAATGGATACAA 16763 32 100.0 33 ................................ CGGCCATGAGGGATGATAGTGTATCGGGTACTG 16698 32 96.9 34 T............................... AGGGTTTTGGTGTCGTCAACAACGTAGAATGTAG 16632 32 96.9 33 G............................... CGTCTTTGGTTAAAGATGGTAAGTGCGTTAAGT 16567 32 100.0 33 ................................ CGTTTTTGTAAGGACGGACGACTTTGCCATCCG 16502 32 100.0 33 ................................ TGCAAGTCCATGCCTGCAAGCATACTTGGCTGT 16437 32 96.9 33 T............................... TTCGCGTTTACTGTCAGTCCAACCACTGCCCAA 16372 32 96.9 33 G............................... CATGAAGACACATTGGTAAAAATCGCCGGATGT 16307 32 100.0 32 ................................ CTGCAACTGTTATGAAAGTTAGGATTATGTTT 16243 32 96.9 33 T............................... CAGCTCGCGCGCATAGTTTTGAGCCGACAGACG 16178 32 100.0 34 ................................ TACAAGCGGCTATTAGCGGAATTTCAAGGCAAGA 16112 32 96.9 32 A............................... TGTTATATCGGCAACATTCTGCTGTGTCAGTC 16048 32 100.0 34 ................................ CAACAAATTCAAGCCCGTAACTACACAAGCGCAA 15982 32 96.9 33 A............................... TGCTAAAGTACCTTTAACGATTGAAGCTTCAGT 15917 32 96.9 34 T............................... AAATCTTCTGATAGGGGTTTGCCTTACCGTCATA 15851 32 96.9 34 A............................... ACACTCTTTAATTTATAATCAAGAAACGCTAACG 15785 32 96.9 33 A............................... TCGTGAATCCCAACAACCCAAGCAGACGAAAAG 15720 32 96.9 33 T............................... ATTGAAAACAGGCATTATTGCCGTCGGCGCGGT 15655 32 96.9 34 T............................... AGGAACTGGTGGCGGTGGTGGTAGCTCGGGCGGT 15589 32 96.9 32 G............................... AGTCAAGTGAAATTGCGACTGATTATGTAGTA 15525 32 96.9 33 T............................... TCGGAGAGTGCGCGGTTAAATATGCTGGAATGG 15460 32 100.0 32 ................................ GAAGCTGTTGTTTTAAATCAGGAATATGAACG 15396 32 96.9 33 T............................... CTGATCGTCTTTGATTCTTAGTGCTTTCATTTT 15331 32 96.9 32 T............................... TATGAAAAATTTGAAACAAAAAATTGCCATTG 15267 32 96.9 33 G............................... TTGAACTCGCCAAGAAGAACCGCGTTAAAGTCT 15202 32 100.0 33 ................................ AGATGATGAGAACGAATACCAAAGACTGTTAAG 15137 32 96.9 33 A............................... ATAAAAAATATGGTACAGCTTATTTAAAAATGT 15072 32 96.9 34 T............................... GCCGTTTCCTTTTTCAGCGGCATCTTCGGCGGCG 15006 32 96.9 34 A............................... TTCTTGCAGTGCGCCTTGATAGCGCAGCAGCTTG 14940 32 100.0 33 ................................ TAAATTTCCTTTATTTGGATTTCATCGAATTGT 14875 32 96.9 33 G............................... TCAACGCCCCCCACACCCTGAAAAGGTACATCA 14810 32 100.0 33 ................................ TTTAGAAAGACTACGCAAATTGTCAGCAGATAT 14745 32 96.9 33 G............................... CACAAATCCGCCGCTGCACAAGTAATAAAAGGC 14680 32 96.9 35 A............................... TTGATGTTGTAAGCCGTCATCTGCGCCATCGTCAG 14613 32 100.0 34 ................................ ATCACGCTTGTGGCACGCCGTAACGATCCAAACG 14547 32 96.9 34 .......T........................ TTCTAAATCTCTATTTCCAGCAACAATGGTTTTA 14481 32 100.0 36 ................................ CTTAGATGTTCCGCCAAGATAAGCGACATCATTGAC 14413 32 100.0 36 ................................ CTTAGATGTTCCGCCAAGATAAGCGGCATCATTGAC 14345 32 100.0 36 ................................ CCAGACCACGGCAGTAAAGAAATCGGTTCGGGCTTA 14277 32 100.0 34 ................................ AACAGAAAATACTATTGTGTGCAATTGGTGTTTT 14211 32 96.9 34 ............G................... TTTTTTGGTGGAATGCAGACGTAAAGAAAGCCTA 14145 32 96.9 35 ............G................... AGGGTAAACCAACCCTGCGGGCGGTGGGTAAACTT 14078 32 96.9 34 ............G................... AGTATATACACGAAGAGCAAAAAGCAATTGATGA 14012 32 93.8 34 T...........G................... TAATACAACCAATAGTATTGAATACGATGGTCGA 13946 32 93.8 33 T...................A........... GCCTTCTGGAATAGGCAGGTTAGGAATAATTTT 13881 32 96.9 35 .........................C...... TCTAGTAACTACGAACTCTATGACGACCTATTCCG 13814 32 78.1 0 T..........TG..T......A....C...T | ========== ====== ====== ====== ================================ ==================================== ================== 143 32 97.8 33 CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : TGCACATGGGAATACAAAATGCTGATGCTGATTACTTACGATATTTCGCTGGAAGACGCGGAAGGACAGGCAAGGCTGCGGCGCGTGGCAAAATTGTGTTTGGACTACGGCGTGCGTGTGCAGTATTCAGTGTTCGAATGCGACATCGCACCCGACCAGTGGGTTGTTTTAAAAGACAAACTTTTGAAAACCTACAACCCCGAAACCGACAGCCTGCGCTTTTACCATCTAGGCAGCAAATGGCGACGCAAAGTGGAACACCACGGCGCGAAGCCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTAAATCGCCAACCTACGGTTCTCATGAAAATGCGGCAGGGTTGGCGAATTGGGATTGTTCTTTAACAATCAGGATATTGCGAATGCGGGTGTAACGGAAAAGGCTGTGTTATACTCGCGTTTACGCTTTTCTTGGGAGCTTAGCGAAATCGGGGCTGCGAAACTTGACGGAGCAAGGCTTTTAAGAGGGGC # Right flank : ATCGTCCAAGCAGGCTACTCTTCTTGGTGCGCAGGAAATTACCTGCCAGACGGGAAAGTTGCATGATTTAGGGAAATATTCAGAAGCCTTTAACCGTCAATTACACGGCGGACTGTCAGTTGATCATGCTACTGTTGGAGCCAAAATTGCAAAAACGCTTGCGTTAGAGTGGAGGTCAAAGTATAACCTGTTGTTATCTTACTTAGGCTAGATAACTTTATTAATGAATTAAAAGGCAAAAATAATGGAAATCAAACAAACCAATTCAACTATCAAATCTCGTGCTGCGGTAGCATTCGCCCCAAATCAACCCTTACAAATTGTGGAAATCGATGTAGAAATGCCACGCAAAGGCGAGGTGTTAATTCGTAATACTCACACTGGCGTGTGCCATACTGATGCATTTACGTTATCAGGAAGCGATCCTGAAGGTGTATTCCCTGTGGTGCTTGGACATGAAGGTGCGGGTGTAGTCGTTGCTGTGGGTGAAGGTGTGTCGA # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.42, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 81954-79805 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAACAF010000010.1 Neisseria flavescens strain N78, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 81953 36 88.9 30 T...G..GC........................... TCGGCGATGCAGTACATATTAGGCCGGGCA T [81947] 81886 36 100.0 30 .................................... CGTGAGAACTTCGCCGGTATCTTTGTCGAT 81820 36 100.0 30 .................................... GGTAGGGAGCAGGTATATCTCTTTTGACTC 81754 36 100.0 30 .................................... TGTTCTTGTTGGCCAGTGCCTTGCTGATAG 81688 36 97.2 30 ........................T........... GCTGTTGCAAAGCTCGCAAATCAGCAAATA 81622 36 100.0 30 .................................... GGTTGAAGCCTGCATATAAAGCAAAGAACT 81556 36 100.0 30 .................................... CCTTGCCATTAACAAAAGCAATAACAAGTG 81490 36 100.0 30 .................................... TAAAGCAATCAAAGCAACTACAGGTAGCAA 81424 36 100.0 30 .................................... GATTGACCTGCCTGATGGCCGCACTATCGT 81358 36 100.0 30 .................................... GTCAAACCAATAGACAGGTACATGGTCAGT 81292 36 100.0 30 .................................... GGAAGACGGTCTGACTGCATCATGGTTTGA 81226 36 100.0 30 .................................... ATTAACCCCATGCAATAAAAGGTGTTTTAT 81160 36 100.0 30 .................................... ATAATCAAGCGCATGTTGATTATCCCTTTT 81094 36 100.0 30 .................................... GTCAAACCAATAGACAGGTACATGGTCAGT 81028 36 100.0 30 .................................... GCGTCAAGGGGTATCCAAAAAGATTTGTAA 80962 36 100.0 30 .................................... GCAAGTTTACGTCAAGCAGCTTGGGCGATT 80896 36 100.0 30 .................................... AGCCATAGCGATAATAAAGGGTCTAATCAT 80830 36 100.0 30 .................................... CAGCGACCGTCTTTCGGTGTGTGAAATGTA 80764 36 100.0 30 .................................... ATTCTGCTTTTTCCATTTACGCTTGTTCCC 80698 36 100.0 30 .................................... TGTTGTAATCATCGATACACTTGACCACAT 80632 36 100.0 30 .................................... TCAGCCACATCAACACGAGTTACGGCATGC 80566 36 100.0 30 .................................... TATTGTCGTAGTCTGTCTAAAAGTCGTAAG 80500 36 100.0 30 .................................... CGCATACGGACACCTAGCGGCGTTTTATGT 80434 36 100.0 30 .................................... GATAATCCAAACGACTACAAACGCGCCTAA 80368 36 100.0 30 .................................... TAACTGCATTTTAAAAGGCAAAGAAAGAAC 80302 36 100.0 30 .................................... GGTCCTCTCTTGCTTGGTTTGGGCTGTATT 80236 36 100.0 30 .................................... TACTAAACCTAAAGAACGACCCAAATTTAC 80170 36 100.0 30 .................................... TGTCGCCCAGTTGTTTACCTTTTTCATAAA 80104 36 100.0 30 .................................... GCCCCAACCCTTGCTAATAGCGTTTTTGAG 80038 36 100.0 30 .................................... ACCTTGCGCTTGGTAGAGATACATTTTTTC 79972 36 100.0 30 .................................... GATACAGGGAGGGATACGGATAGATAGCTG 79906 36 100.0 30 .................................... CCTATCAATGGATACTTGCAATTTTTTTTC 79840 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 33 36 99.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TGACATTAGGTTCCAAATTAGAAGCTTGGCCGCCTGTAGGCTTAGAAAAGCCGTAAGTTTGAAGATTAAAGGATAATGACATGCGTCATCGTAATGGCAACCGCAAATTAAACCGTACTAGCAGCCACCGTGCTGCGATGCTGCGCAATATGGCGAATTCCTTGTTGACTCACGAAACCATCGTGACAACTTTGCCTAAAGCAAAAGAATTGCGCCGCGTAGTTGAGCCCTTGATTACCTTGGGTAAAAAACCTTCTTTGGCAAACCGTCGTTTGGCTTTTGACCGCACTCGCGATCGTGATGTTGTAGTTAAATTGTTTAACGAATTGGGTCCACGCTTTGCTGCTCGTAACGGCGGCTATGTTCGTGTACTGAAATACGGTTTCCGTAAAGGCGACAATGCTCCTTTGGCATTGGTTGAATTGGTTGATAAAGCAGCTGATTCTGCTGAATAAGCAAATTAATATGAAAGCACTACCTGTTTAGGTGGTGCTTTTTTA # Right flank : ACCTAAACGGGAAACTCTTATTCTATAAGGGTTTCCCGTTTTATTTGGTCTGAAAAATAGGGCTTAAAATAATAATAGTTGGTCGGAATTTACCCTTTTTTCTTGGGTTTTCAGCTCTCCCAATAGTAGTTTCATGGTGGCATATTGCTTTTCTGTTACTTCCAAACAGCGGATTGACCCTTCTTGCGGTAGGTTTGCACATAGCCTGTTGTGGTGTTTTTGCAACGAATCTCGACCTTTGACAATACGGCTGTATACGGAAAGTTGGAGCATTTGGTATCCATCTTTTAATAGAAACTGGCGGAATTGATTGGCGGCTTTGCGCTTGGCCGCTGTGGTGACTGGTAGGTCGAAGAAGACGATAATCCTCATAAATTTGGCCTCACTCATATTGGTATTCTTTCAATGGCAAGATTTCAGGTAGTTTCAGCTGTTTGGCGTTTTTGTCGGTTACGCTGGCTTGAAATGAAGAAATCATTTTGTCGATGGCAGCCAAGGTG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA //