Array 1 104592-98377 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHXEZ010000011.1 Bifidobacterium pseudocatenulatum strain YIT12145 YIT12145_11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ====================================== ================== 104591 33 100.0 33 ................................. TAGCTGGTTTCGGCGGGGTTGGTGGCGCGTGCG 104525 33 100.0 34 ................................. TGATGCAGCGTGACATGGCTGCATACGGTGTCGT 104458 33 100.0 35 ................................. CGCGATTGCCTTGCCGTATGGAGGATTGCAGAATA 104390 33 100.0 34 ................................. TCCTCGTCGTCGCCAAGCAGCAACAGGAAGCCCG 104323 33 100.0 34 ................................. CAGCCTTGGTGAAACTAGTCGAACGCATCCCCGA 104256 33 100.0 34 ................................. GTCGTTTACTGCCGTATGCTTGCCGTCGTATTCG 104189 33 100.0 32 ................................. GCCATCGTTGGTGCGGACGTAGAATTCGTCGC 104124 33 100.0 32 ................................. GAACCGGTCTTGCCGAGATAACCGTCCTGCCG 104059 33 100.0 34 ................................. CGATAGGTTTGCACCGCGAAGGTCGGCACCGCGC 103992 33 100.0 33 ................................. GTCGCCCCAGCAGCAGACTGGTTGCGCGGAGGA 103926 33 100.0 33 ................................. AAAATCGCGAGTTCTTTTGAGAGCTGTCCGATC 103860 33 100.0 34 ................................. GCGTAGAGTTCGCCCTTCGGGTCGGTGCAGGCGT 103793 33 100.0 33 ................................. GTCGGGTTTGGACGTCAGCCGTTCGAGTTCTGC 103727 33 100.0 35 ................................. CAACAGATCGTGTCCGGAGCGTGGCAGGCCGTCTG 103659 33 100.0 35 ................................. ACCGGGTGCGCGATGATGCCTGACCATTGCGAGTC 103591 33 100.0 34 ................................. GCTAGCGGTCCTCGCGTCCTGGTCGCTTAATATC 103524 33 100.0 34 ................................. ACTGAGGTATTCGAAGCCACGGGTGGCGAGCATG 103457 33 100.0 34 ................................. TTGGTGCGGGTGTCCATGACGGTGCGGCATGCCT 103390 33 100.0 35 ................................. ATCACCGATGGGCTAAACGCGGACGCGCTCATGCA 103322 33 100.0 37 ................................. TGGTTGGCTCCGTCGCGGCCGCCGAAGCTGAAATTGA 103252 33 100.0 33 ................................. AGGTCGGTGACGGTCACGAGCTGAGGCGGTAGA 103186 33 100.0 34 ................................. CAGGACTGCGAGGCCGTCCAATGCACTAGATCCT 103119 33 100.0 34 ................................. GTATGCTGCGGGTCTTCGGCGTTCAACGTGCCGT 103052 33 100.0 33 ................................. CTGTGATCCTCGAGATAGGCCAGCAGTGACGCT 102986 33 100.0 35 ................................. TGCCGCACACTGGTATCAAGCCCAGTTTACAAGGT 102918 33 100.0 38 ................................. TTCGTATTCAGGCCCCTATAGCTCAGCCGGCAGAGCAG 102847 33 100.0 33 ................................. TCCAAGAGTCACGTCCACCGCCCCCACAGGGCC 102781 33 100.0 35 ................................. GGGAACGCTGCGGCCATTGCCGACACAACCTCACG 102713 33 100.0 36 ................................. GTGTCGGTGAGATTCTTCACCGTGTACTGTCCGCCG 102644 33 100.0 32 ................................. GGGTCAGATTGGGCGCGTGTCGCGTCGCTTAA 102579 33 100.0 36 ................................. AAGATAAAACGTGTCCCAAAAACGGCACACCACATC 102510 33 100.0 35 ................................. ACCGTCATTGGTGCGGACGTAGAATTCGTCGCCGA 102442 33 100.0 36 ................................. GCTGTGCTGCGCGGCGGTGAACACGAGCATGATCTT 102373 33 100.0 31 ................................. TTTGGTTTCATTATTATATCAGGGCGTGCCT 102309 33 100.0 33 ................................. GAGCTCAGGCCGCAGTATGACGGCCACAAGTCC 102243 33 100.0 33 ................................. TACGTCCGCACTCCTGATGGCGAGATGCGCCGA 102177 33 100.0 33 ................................. CAATCCGGCTGGACCGGAGCGCCACAATGCCAG 102111 33 100.0 33 ................................. ATAGCGCACCTCAGATAGATGTGCAATGGATGT 102045 33 100.0 34 ................................. GCAACCCCTCAGGTGATCGCAGCGCTCAACGTCG 101978 33 100.0 35 ................................. AGGGCGAAAAGACGGTGAAGAACGGCGGTCATGTC 101910 33 100.0 33 ................................. ATGGGCGGATCCGGTATGTTCGTGCGGCTTCGA 101844 33 100.0 34 ................................. GATGGTCTGGCGGCTCAAAGAAGTGTAGCCGCCG 101777 33 100.0 36 ................................. GTCGGTCATGGATGCGAGCCGGTCGTGCAGGTCGGG 101708 33 100.0 33 ................................. CGCGTATCGGATGGCGTTGCCGATACGGATGGG 101642 33 100.0 34 ................................. GAGACCGCGCTGGACACCGTCGACAGACGCTCCA 101575 33 100.0 33 ................................. ACATGGAAGAAGTCCGAGGCTTTTTCTATATCT 101509 33 100.0 34 ................................. TCGATGTTCATTGGTCTTCTTCCTTTCCGAGTGC 101442 33 100.0 35 ................................. AAGAAATACGATGCGCTGACGGTATTGGATCGTGA 101374 33 100.0 35 ................................. GTGAAACTGGACGTGCGCAAATGCTATCCAAGCAT 101306 33 100.0 35 ................................. GACTACCAGTGGTATATCGATCCGGAGGACGGCGA 101238 33 100.0 32 ................................. AGTTGCGTCGGCTGCGTCGGCCATTGCGTCGA 101173 33 100.0 34 ................................. AACGGCAGCATGAAAGCAACTAAAGGGGACATCA 101106 33 100.0 33 ................................. ACCTTCGGGGTGGAGATCGAGATGGAATCCGAG 101040 33 97.0 34 ...............A................. AAGCCCATCCTGTGGGCTGTGCCTTTCGCCCCGT 100973 33 100.0 36 ................................. AGCCCGCGACGGGACATGTCGTAATAGTCGAGCATC 100904 33 100.0 36 ................................. AACCGTGCCAACCACATAGAGCGCGTACGAGTTTTC 100835 33 100.0 34 ................................. CCTGAGCTGGTCTAGATGTTCGGCCACCTCCTGC 100768 33 100.0 35 ................................. ATATCGGCCAGCTGCATGGTCTGCTGGTTGCTGAG 100700 33 100.0 34 ................................. GTTAAGCGTGGCATGGTCGAACAGCATGGGCGCG 100633 33 100.0 36 ................................. CCCCAACTCGAATCGGACACCAAAAAGTCATTGCAT 100564 33 100.0 35 ................................. GAAAAAGACAAGGCCGCATTCTTCGCGGAGTGCAA 100496 33 100.0 33 ................................. CAATAAGACTGGACCCTAAAAACTGCATTCCCG 100430 33 100.0 33 ................................. GACTCGCATTCGTTGAAGGACCCATGGAAGTCG 100364 33 100.0 36 ................................. CAATATGACGCTTGGTAATGCGCTTAAATTCTGTTC 100295 33 97.0 35 ............G.................... AGCCGCAGTATGACGGGCGCAAGTCCTTTTACGGC 100227 33 100.0 35 ................................. ATGGATTGGTCAGAACTCCGGCTCCGGTTCGCCGG 100159 33 100.0 34 ................................. TCGCCATGAGTGAGGTGAACCCGGACGGTGGCGG 100092 33 100.0 35 ................................. CCGATGGGAAGCTTGGACCTGATCTGCCTGATGCG 100024 33 100.0 32 ................................. ATGGGGCACATGTCCACGAAACGCTTGTACAC 99959 33 100.0 35 ................................. GCCCAATACAGGCTTGGGGAACTCGGCTCGCAAAC 99891 33 100.0 33 ................................. AACACGATGGCGGTAACCGTCAGGCCGGTAACA 99825 33 100.0 36 ................................. ACCTTCGGGGTGGAAATCGAGATGGAGTCCGAGCTT 99756 33 100.0 36 ................................. TACGTCCGCACTCAGGACGGTGAAATGCGCCACGTC 99687 33 100.0 35 ................................. TGGTCTACGATGCTGGGCTTCCACTTGGAGGACAG 99619 33 100.0 35 ................................. AAGGATTGACGTAAGCTCGATCAGGCTAATGCCGC 99551 33 100.0 33 ................................. GGGCAAATCTAAGTAAGTCTTGCCCCAGTCTTT 99485 33 100.0 36 ................................. TCGTACCGTGACACGTTGACCGTATTGGGGTATGTG 99416 33 100.0 38 ................................. CGGAGGATATGTTTGGTATCGGCGGTGCCGGTGGCAAG 99345 33 100.0 35 ................................. CTGAGGATGCTTTGTTGACCGCGTTCGACGGCGAA 99277 33 100.0 33 ................................. GTGAAAAGGACTAACAATGGCTACAGTATATAC 99211 33 100.0 36 ................................. TGCTGGGACGAAATGCTCGAAACGACGAACTCCCCC 99142 33 100.0 33 ................................. CAAAATGCTACGTCACCATATACGGGGGTATAG 99076 33 100.0 33 ................................. CACGGGGCGGTCTGGTATCCGGTGACGAGGTTC 99010 33 100.0 33 ................................. GCGGTCAGGCCGGCGATGCCGGATGCGATGCCG 98944 33 100.0 34 ................................. TCGAACGTGTCGTCCGTGGCCGTGTCCGACCCGG 98877 33 100.0 34 ................................. CTCTCAGGAGGCGTGACATGGGAGTGTTGCTTGA 98810 33 100.0 33 ................................. TGTTGTCAACATCGGCGTGTCGCATGTCCGCCA 98744 33 100.0 34 ................................. CAGGTGGCAAATCAGTCAAGGAACTAGCCGACGT 98677 33 100.0 32 ................................. TTACAAGTATGCGACCTTTGGAGAACCGCAAG 98612 33 100.0 38 ................................. AACGACAAGACCTTCGAGTCGAACGTCGTGTGGACCCG 98541 33 100.0 34 ................................. TGGCTGTACGACACGATCGACGTGACCGCGCAGA 98474 33 97.0 32 ..T.............................. TTGAGCATGCGGAGCATGACGTTGGCGGTCGT 98409 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ====================================== ================== 93 33 99.9 34 GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Left flank : CAATACCGATGAGGACAGCCTGCGCTTTTATAAACTTGGCGCTCGATATGCGGATAGGATTGAGCATTATGGACGTGAACGGAGTTTGCCGGTTAATGATGTGATGATGATATAGCACAGGCAAAATGGCATGGTGCCATAACGATATGGTGTGGGGTATGCTGGGTTGAGCGTTTGAGTGTGCCGTCCGGTATTCAGAGTGTGTTTTCTAGCCAGCAGTATTGTGTTTTCGGCAAGGTGGCCGGTCTTGGAACGGTGTTTGTGCGAAGTGTAAGCGCTCATGATAAGGGACGTCTTTCGCACCTGAAAAACTATCGAAATCCGAATTGTGATTTTCGTGGGGCGTTTTGAAAACTAAATAATGGACATTAAAATGAGACAGAAAGCCAGTTGCTCGTTTTAGACATGTTGTTCGTCGTATCGGCGGTGTTGTTTGATATGCTTAAAGCTAGGCAGCTGGCTTGCGTCTCAAAAAGCGGACAAAAATGTCCAGCTGCACT # Right flank : CGGTGTCTGCATCGTTCTGGCCGCCGCGTGGATGTTGCTCTCCCTGTTTATGTCCAGTGTTCCCCGCACATGCGGGATTCCACATGTGCGGGACTGCTAGCAACGGAAAACCAGGGTTTTTGTCCGCTCGGGGCGACTTCAACGGTAATACGAGCAGGAACTGCGACTGGGTGTTTCGCATGGGGTCGCTTCTGAAAGCTATGTAAAAGAAATAGTGTATGTGAAAACGGTCGGGTGGGTGCGGATGCACGAGAAATTGGCTAACCTGTCGAATTTTTGTTTTACTTTGGTCGTTCATCTCGTGAGTGGTCGTCAAGCTAGACATATTGTGTCCCATGGGATGCAACATGTCATATGGAAATACATATGACTGGCGAATATCGCCAATGGTTCAGCCGGATAAAGGACCGGAACGCAAAAGCCCGAATCAGCGCGAGACTCCGATTGCGCTTCTAGATGGGGCGGCCGGTGGGTGACCTGCATACGGTTGGTGACGGGGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCCTCATGGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCTCACGGAGAGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.30,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //