Array 1 47847-50304 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAEI01000043.1 Neisseria flavescens strain CD-NF2 seq0115, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 47847 33 93.9 32 CC............................... AAAACAACGTTCCTGTATATCGGCGGCCTCGT 47912 33 93.9 32 CG............................... GTTTATTTTGTCGTGAATATCTTCCGTTAAAA 47977 33 93.9 33 AC............................... ACGTCAGCCTCATCAATCATTTCGTCTACTGCG 48043 33 100.0 33 ................................. TTGTCGTGGCTTACTATGTTTACAAAACACAAA 48109 33 93.9 34 AA............................... CAAAAGACTTACACGGACACCGTATTTATCGAAA 48176 33 93.9 32 AA............................... TGGTAATGGTTTCGAGATATTCCCAGGTCCAA 48241 33 97.0 32 A................................ ACCAAGGTTGGCAAATAATTTTCGAACCGCGT 48306 33 97.0 36 C................................ AAATCATAAACAGTGCCCAATCTTGAGTCAACTGTG 48375 33 97.0 31 .A............................... AAATCAGATTGTCCTTACTGTCATACCATGG 48439 33 97.0 33 C................................ AAGCTTGGCCGCGACGTTGACCTCTCCATGATT 48505 33 97.0 31 .A............................... CACAAACACAAAGACGGCGAATCATCAAGCC 48569 33 97.0 31 C................................ GTCTTGGCGGAATTGTGGGAGCATTCGATGG 48633 33 93.9 34 CG............................... ACAATAAAGTACGATGTTTTTGGATTGCAGGCTC A,A [48656,48662] 48702 33 97.0 33 .C............................... TTAACTCATGCCACTGTTGATACAGGCCATAGC 48768 33 93.9 31 AA............................... ATCGACACGCTAAGTTTCACGTTTAAGAAAA 48832 33 97.0 33 A................................ CCCTTGTATGAATCCAGTGAAATAACCGATTGA 48898 33 93.9 32 AA............................... TGCAATCGGAATCAGTTTAATGCCGTCAGGAT 48963 33 100.0 32 ................................. AAGCAATTTAAAACAAATAATCTTAACCACAT 49028 33 97.0 33 C................................ AGACCATCAACGTTTGATTCAATCATTGTGTCC 49094 33 93.9 33 AG............................... TGACGCGGGCCTTAACTCAATGCTGCAAGACGT 49160 33 97.0 32 .C............................... CTTAAATTAAAACCAAATGGTCAAATACAAAT 49225 33 93.9 32 CC............................... TGAACCAGGCTGAAGATTCAGTTGAAGTTCAG 49290 33 100.0 32 ................................. GGAAAATTTGATTGGGACAATCTGACTGTTGG 49355 33 97.0 32 .G............................... GACCGTCACGCCGTATCGCCGGCGTAGGGTAG 49420 33 93.9 33 CG............................... TATGGTTGCTCCATATAGCGAAAATAGCACTAA 49486 33 97.0 32 .A............................... GAATAACGACATTATTGACCAAGAATCTAATG 49551 33 100.0 32 ................................. TTTGTTAACTTGGTTGACAAGGTCATCACATT 49616 33 93.9 34 CG............................... AGCGATGACGACCTCGACGTCATCGAGAATCTAG 49683 33 97.0 33 .C............................... TCTCGTAAATACGAAACATTTGGTTTATATTTT 49749 33 93.9 33 AC............................... ACACGCTTACCACCAGCCTTACCGCGACCAACA 49815 33 93.9 32 AC............................... AGCCGTTCAATCAATCCTAGCAAGACAGGGCT 49880 33 97.0 32 A................................ TTGCAATGTTGCGCCGTATGAGCCGCTAATGC 49945 33 93.9 32 CC............................... CGGTATTGGTTACGCTTGCCGTTTCGCCTGTC 50010 33 97.0 32 G................................ CTGTTGTTTCGGTATGGAAAAAGAGGATTTGG 50075 33 93.9 32 GG............................... AGCGCCTTGTCATTACCGAGGCAGACTACACC 50140 33 97.0 33 G................................ AGGCGTGATAATAATGAATAAATCGGTTGAGTT 50206 33 97.0 33 .G............................... CGAACGAACAAGCAGGCCGTCTGAACGCGACCG 50272 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 38 33 96.1 33 TTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : CTGTATATGGGAATACAAAATGCTAATGCTGATTACTTACGATATTTCGCTGGAAGACGCGGACGGACAGGCAAGGCTACGGCGCGTGGCGAAATTGTGTTTGGACTATGGCGTGCGCGTGCAATATTCGGTATTCGAATGCGACATCGCACCCGATCAGTGGGTTGTTTTAAAAGATAAACTCTTGAAAACCTACAACCCCGAAACCGACAGCTTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGCAAAGTGGAACACCATGGCGCGAAACCGGCGGTGGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTGCGGTTCTCATGAAAATGCGGCAGGGTTGGCAAACTTGGATTGTTCTTTAACAATCAGGATATTGTGAATGCAGGTGTAACGGAAAAGGCTGTGTTATACTCGCATTTCTGCTTTTCTTGGGAGCTTAGCGAAATTGGGGCTGCGAAACCTGATGGAGCAAGGCTTTTGAGAGAGG # Right flank : CTGTCCGGCGCGTTTAAGTTGGGCGCGCAATTGTCAGCCGCCTTAGTCGTGGTGTGGTCGG # Questionable array : NO Score: 5.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.17, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 54514-53622 **** Predicted by CRISPRDetect 2.4 *** >NZ_LAEI01000059.1 Neisseria flavescens strain CD-NF2 seq0059, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 54513 33 93.9 31 TC............................... TGCTTCGCTGTATTCGCTAGATAAGCCATTT 54449 32 93.9 31 T.......-........................ GACAAGTCTTGAAGAATAGAAACAGCCAAAC 54386 33 97.0 33 T................................ TGAAGACTGGAGAGCGTATTCTTACAGCTCAGC 54320 33 100.0 33 ................................. TGAAGACTGGAGAGCGTATTCTTACAGCTCAGC 54254 33 100.0 33 ................................. TCTTTGGGTTGAGTGTTTGCCGTCCGTTTTCGG 54188 33 97.0 35 .C............................... TCCGTCAGCTCGTCCTTATGTCGCTTCGCAGTATG 54120 33 97.0 34 T................................ TGCTACGTCATCCTCAAAATTTAGGGATAGCGGT 54053 33 97.0 31 .T............................... GGTTGTCACCTCGGTTAAAGCAGGAGACCCT 53989 33 93.9 33 GA............................... TTATCAAGCTCTGGGTCAAATTTGGCGTATTCC 53923 33 93.9 34 CA............................... TTTACTACCGTGGTTTGGGAAAACTGATGTTTTA 53856 33 90.9 32 TC...........A................... CAGCTCGCGCGCATAGTTTTGAGCCGCCAACA 53791 33 90.9 35 GC................A.............. CTTCGGACGCAATGAACCTAGCTTATATCGCAGGA 53723 33 90.9 35 .C...........A.....T............. GTCGATTATCGGCATTGATGCCTTGCGCCTGCCTG 53655 33 93.9 0 CC............................... | A [53634] ========== ====== ====== ====== ================================= =================================== ================== 14 33 95.0 33 AGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TAAGCAAGTCGTCACCACCATCACT # Right flank : AAAGTAAGGCATTTAGTGGCACAAGGTCGTCTAAACCAGCCGGCTGGGTGTTGAAACTCTGCCACCGTATCTCATGTCTGAGTAGGGAAGAGGGGGCTGTATGTTCAAATATCGTCCAAGCAGACCGCTCTTCTTTTGATCCTTCGCTTTTCGAAGCTTTAGTGAAAGCTGTGGAGGATATTAGAAGCAAGTTATAAAGGGTAATTAATAACAATGCCGTCTGAAAAAGTTTCAGACGGCATTTTTTATATTTACATATTAAATTTAATATCATATTATCATTGAATCTATATCAATTTGAATTTTTTAGAATTTCAATATGAAACCCCTAATTTACTACGCCCATTCCGCCCAAGACAAACTCGGTAATCTCTTGCCTTACGAACATTGGCAAACCTTACAAAGCCATTCGGTAAATGTTGGGGAAATGGCGGTGGAGTTTGCTCAGGTATTCGGTGCCTGCCATACTGGACAGCTTCATGACTTAGGGAAATATTCAG # Questionable array : NO Score: 5.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.24, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.00,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [5-6] Score: 0/0.41 # AT richness analysis in flanks prediction: F [51.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //