Array 1 148204-147869 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAY01000015.1 Nocardiopsis kunsanensis DSM 44524 contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 148203 30 96.7 31 .............................C ACGATGCCCGAGCGTCTCGGCCAGCATCCGA 148142 30 96.7 31 .............................C CCCCGCCGGAGCACCGGCGGGGGCGTGATCA 148081 30 100.0 31 .............................. CGTCTCGTGGCTCAGCGGGCGGTTGTTCGTG 148020 30 100.0 31 .............................. GCCTGCCACACGACGGGTCCCCGAAGTCGGG 147959 30 96.7 31 .............................T CACCCCCGCCTCGGGCACGGCGCCGCTGGGC 147898 30 90.0 0 .........................G.A.A | ========== ====== ====== ====== ============================== =============================== ================== 6 30 96.7 31 CTGCGCCCCACGCACGTGGGGATGGACCGG # Left flank : CCACGGTCGGCCTGACGATCCCCTCGGTGCTCACCATCGGGCTCATCACCGACCGGACCGTGACTCTGGCCGAGAACCCCACCAACCTGGTCCTACTGGGTATCAGTCTGCTGCTCACCGTCAGCACCTTCACCGCTCAGCGTGTGACAGCTCTCCACGGTGCCGCGCATCTGCTGGTCTTCGTGCTCTACGGCATCACCGTGTTCTCTTAGCAGCTCGGAACCGGACTCAGCTGCGGATGCGACTGAACAGGGGGCCGAGTCGTCTCCCGCGCGGTACGTTCTGAGGGCCTACGGGTGCCGATTCCGCGCGCCTGTGGGGTAGAAGAGGGGGTGAGGTCTCCTCGGGCAGGGGAGTGAGGTCTCTCGTGAAACGGTACGGATGGCCAAGGTCAGGGCTGGCTTGTGCGAAGAGTGTCTGCCTGATTACAGGGGTGCGCGCAACCCCGATAGTTTTGGCTTCAAAACGATAACGGCGAGAGTTTGTGCAGGTCGGGAAGT # Right flank : CGCTCAACCGGATCGAGACGGTCGCCGGTCTCCGGCGAGTCGGCGCGTGCACACACGCCCAGCTCGGAGGGTTCCGTCGAGGAGGCCTCACGGCGGGGCCTCAGGAGAGCTCCGCGTCTCCCGAGGCCCCCACCGGGTCCTCAGGAGTCCAGGAGGGACTGCAGGAGCTCACCGAACTCGTCGTCGTCGGTGAACAGCGAGGCCGAACCCTGCTCCTGGTCGATCTCGATCCGTACGGCACGCAGGTCGGGCAGATCGGACTCGGCGCGCTCCCGGGAAGAGGGGTGCCACCAGTACACCTGAGAGGTGATGGGCCTCTCACCCTCCTCGACGAAGCGACCGGCCATGTTCTGGAGGAGCTCGAGTGCCGCTACGGGGTGGCTGCTCTCCTCCCCGAGGACATGGGCCAGAACCACCTGAGGGACCGGCAGCGCCACGAGCACACCGTGCGGGGTGTGCTCCAAGTGCTTGCTCAGGACATGCAGCTGGGCGGACACGTA # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCGCCCCACGCACGTGGGGATGGACCGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCACGCGGGGATGGACCCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.60,-11.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 63739-63040 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAY01000021.1 Nocardiopsis kunsanensis DSM 44524 contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 63738 29 100.0 32 ............................. CCGGCAACGCAACGCAACGTTGCTATAGGGGT 63677 29 100.0 32 ............................. TCGCGGCCGGAGGTGACGAGACGGTGATCGTG 63616 29 100.0 32 ............................. CACTCCGACGGCGGTTCCATCGGCGCGGCCTC 63555 29 100.0 32 ............................. ACAGAGAGCGGGAGGCGAAGATGTCCCAGATC 63494 29 100.0 32 ............................. GGGCCTTCATCGAGGGCCTGCCGAACTGGGCG 63433 29 100.0 32 ............................. GACGGCGAAGCGTGGCCGCAGCAGGAGACCAT 63372 29 100.0 32 ............................. GCCACGCAGTTGGCGCAGAGCCTTGTGCGCGG 63311 29 100.0 32 ............................. AAAGGATCGCGGAAACCCCAGAACGTGGCACA 63250 29 100.0 32 ............................. ACGTGGTCCTGTGAGCCGTCGACCCACAGCAT 63189 29 100.0 32 ............................. TCGCCCGTGGTCGCAGCCGTGGGCTGGGATCC 63128 29 100.0 32 ............................. CCGTGGCAGTGGAGAAGCGACCTCGCCCGGTA 63067 28 96.6 0 .........................-... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.7 32 GTGCTCCCCGCACGCGCGGGGGTGGTCCC # Left flank : GGGGAGTGACCGTGGAGTCCGGACAGAACATGGGGGTCATCTGGTGACGGTGATCGTTCTGACCAATTGTCCGGTCGGGTTGCGAGGGCTGCTCACGCGGTGGTTGATGGAGATTGCTCCGAACGTGTTCATCGGCACCCCCTCGGCCCGAGTGCGTCAGGTGCTGTGGGACGAGGTGCAGACGTATCGGGGGCAGGGGCGAGCGATCCTTACGTACACCACCAACAATGAGCAGGGGTTCACCTTCGAGACGTTCGAGCACTCGTGGTGCCCGGTCGACCATGAAGGGATGGTGCTCATCGAACGACCCCGCGTCGGCGGATCTGTCGGAGGGCGTGGACCTGGTGGGCCAGGCGAACGCCCTGAGAAGAACAAAGGCTGGAGCAAGGCCTACAAGCGTCGCCGGTTCGGACGGTGAGGTCGTGATCAACCTGTTACGAGGTCCTGTGAAGTTTGCAGATTTTCGGGTTACTCGTTGGTAGGTGTGCAGGTCAGGAAGA # Right flank : AGGGGCTCAGCCTCAGCGCACGTGCGCTGAGGCTGAGCCCCTTGTGTGGCTGAGCGTGGACGCTTCCTGGGTGGGAGAAGTCCTGCGTGGCCCCTGCCTCGTCCCGACCCCCGAGACAGGCCTCCTCGTGGCCGGAAGAGGACACCGCCCCCACCTCTGCTCCGGGCGTCGGTAGGCTTGCCGCCACGAATCGGTGTCGCCCCCACGCCAGGAGAAGCATGAGTGCCGACCCCTCCCGGACGGGCAGTACTTCGAACACGATCGGAGGCGACGTCAACGGCGGCCAGTTCGTCATGGCCGAGAGAATGCGGGACGTGCACCACCACTACTACGGTGAACCTCCCGTCCAGTCCCCGTCCCAGAGCCCGATGCAGGTCGAGGCGCCGCCGAGCGACTTCGTCAACCACGACGAGACCCTGGCGTGGATCCGTCAGAACCTGGATCCCGACGGCCCTCCCGTGGTGGTGATCTGTTCGGGGACACGCGGTATCGGCAAGAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 76480-73946 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAY01000021.1 Nocardiopsis kunsanensis DSM 44524 contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 76479 30 96.7 31 .............................T GCGAGGCGCACGGGGAGGGCGGGGGCTACCA 76418 30 100.0 31 .............................. TGCCCGTGGGCTCGCCCGTGGGCTCGCCCGT 76357 30 96.7 32 .............................A GGTCCACGTCCGGAACGTCGTCTAGGACGAGC 76295 30 96.7 31 .............................C CTCCGGCCTCACAGATCCTCCTGTCGAACTT 76234 30 100.0 31 .............................. TGGCGACGAGTTCGCCGACATTCATGGCCAA 76173 30 96.7 31 .............................A CTGTCTCGTTCAGCACGTACAGCAACAGTCT 76112 30 96.7 31 .............................C GGGTCGTGTCCGGGGCCCGATCGGGGCGGGA 76051 30 96.7 31 .............................A ACCACTGACGGGTGCTGCCTCTGCCCACCAG 75990 30 100.0 31 .............................. CGGCCTCACGGTCGTACTCGTCGCCCTTGGC 75929 30 100.0 31 .............................. TGGCGGGCTCGGGGTCCTGGCCGTGCGCGGG 75868 30 96.7 31 .............................C CGGACAACGTCCGTCGGCAGGCGCAGGAGGG 75807 30 96.7 31 .............................T CCCCGTTACGCCAGTCACCGGACAGGCTGTA 75746 30 100.0 31 .............................. ACCCGTTGGACCTGGAGGCGCTCATGTCCAT 75685 30 100.0 31 .............................. GTGTGATCGTTGGAGGCCAGGGACAGAGCCA 75624 30 96.7 31 .............................T TGCCCCGATCATCGCGCAGGATGATCTTGCG 75563 30 96.7 31 .............................C GTCGCGCTTGGCAATCTGGTTGGCCCATTCC 75502 30 100.0 31 .............................. TCGCCGCGCGACGGACATCCCTGTAGGTGAC 75441 30 96.7 31 .............................T CGATGGAAACGTTGATCCACTGGATCGCGTC 75380 30 96.7 31 .............................A TGGACAGGGTGTCGGTGCCGGGGAAGTGTGG 75319 30 100.0 31 .............................. AGGTCTGGAGCGGGGCCGTGCCCGAGGCGGG 75258 30 96.7 31 .............................C CCTGGTAGCGGGCGTCGTCGGTGCGGGTGCG 75197 30 100.0 31 .............................. GGTTCGGGGTGGTCGGAGGGCCCGCCCCAGT 75136 30 96.7 31 .............................C GTTGTGCCGCACCTGCGGATACCGGGCGGCG 75075 30 96.7 31 .............................C CTCCCGGGATGTCGAACGTGATCTGACCATC 75014 30 90.0 31 ...........A.G...............A GAGGGACCGGAGGGGGCAGGGGGAGCGGACA 74953 30 93.3 31 ...........A.G................ CGTCAAGACCCCGGACAGGACGCCGGCAGCA 74892 30 93.3 31 ...........A.G................ AAAGGTTGTCCTACCTCGGCAGCGGCACGGA 74831 30 86.7 31 ...........A.G..............AA GCGGGGGGTAGGCGCCCCCCGTGCTGAGAGG 74770 30 90.0 31 ...........A.G...............T GCTGATGGGTGAGCACGAGACACCAGCCACC 74709 30 90.0 31 ...........A.G...............C CGGCGTGCCTCAGCGACGTCTGGAGGGCCTC 74648 30 86.7 31 ...........A.G..............TA CCCGACGGCCGGCACCGCCACGGTGGCGGAG 74587 30 93.3 32 ...........A.G................ ATCAGGTCGAGGGAGCGCTCCTGTGTCCACGC 74525 30 90.0 31 ...........A.G...............C CCACCAGCGACCGGCCGGAATACCGAATAGC 74464 30 90.0 31 ...........A.G...............C GGCCTCGCGTGGGCCGGCCGTGGGGGCGTAG 74403 30 90.0 31 ...........A.G...............C GTCCGGACGCCCCGAGGCTCACCGCGGTCAT 74342 30 90.0 31 ...........A.G...............C TGTTCCGCCCGCACCTGGAATTCGGGGGGAT 74281 30 86.7 32 .......T...A.G...............C CATGCGCCGCGTCGGGCTGTGAGCCGCATTCG 74219 30 86.7 31 ...........A.G...........C...T CACCTCCTCCGAACCCGGCCACAGCCAGGAC 74158 30 90.0 31 ...........A.G...............C GCCACGGCCAGATCCGCTGGCAGCGCGCCGT 74097 30 90.0 31 ...........A.G.......G........ ACGAGGACGTGCCCACCCGCAAGCGCCTGGC 74036 30 96.7 31 .....................G........ AGGAGGTCGTCGACACGACCACCATGGACTC 73975 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================ ================== 42 30 94.9 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : CTCCGTATGGAGTCCGTCGGCACGGGGCCTTCGACATATGAAGTTTGAAGGAGGGTCGATGCGGCGGTCGCCTCTCGGCGCGTGGCACAACACGGTTCCGAGTCCGCCTCGAGGGCGCGGTATTCCGTGAAGGCTTTGAGTGGAGCCCGGGGGACACTTGCTACCGCACCGACCCTCGCCGCGTGTAACGGGAGGGGACCGGGTGGTATTCCGCGCGCCTCAGATTTTTTCTGCCGTCTTGTCGAGCGGCTGTGGCAGGGACGCCCGTCCGGGAGAGGGGAGGTGTCCGTGGGTCGGCCGCTCCGTGCGTCTCGGGTCGGGGCGGCCGACTCGGGGGCGGTTCATGTGAGGGGGAGGGATGCGTCCGGGGTCTGTGCGTCGCATACTGAGACCTGCACTTCCTCGCCCGAAGGGTCGACGGCGTGATCTCAGCGTTATCTGAACCTGTGAAGTTTGCAGATTTTCGGGTTACTCGTCGGTAGACGTGCAGGTCAGGAAGA # Right flank : ACCGTGCGCTCGCGCGCCTGCGTGCGGTGATGCGCTCTCCGCGTGCTGGGTTGGTCTCGGTCTGGGGCCGGCGAACCCGGGGCCCCGGTAGTGTCCCCCGCGCGCGGAGAGGTTTAGTGAACGAGCCGAGTCAGCGCAATGTAGGACAGCAATCCCGTCCCAAGGCCACTATCGATGGCCGACTGGTGCGATGCTCCGCCAGACCACTGGAGCCACGTCGAAGCAAATGCGCCGACGACACAGAGCGTAAGAATCAGGAGCGTTCGAGTGCTAACAGTGGAGGTTTCTGTCTGGTAGTGGGGAGCGCAGGTGTCTTGGTCGCCCTGGGGGGTCGTGTTCACTGATCTCCTTCAGTCTCCGACGTTCAAAGTGAATGAGGGGAAGTCTACATCAGCTATGTATAGAATCGCCCGTGTTCCCCGCGCATGCGGGGGTGGCCCCGTCGGAGACTGAGTGTCACAGACGAACATGGCATGCTCCCCGCGCACGCGGGGATGGTC # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.30, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 90251-89855 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAY01000021.1 Nocardiopsis kunsanensis DSM 44524 contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 90250 30 96.7 31 .............................A CGGTGGAGGATGCGTGAGCACCTCGTGCATC 90189 30 100.0 31 .............................. TCGTCACCGAGGCTCAGCAGACGTTGATCGT 90128 30 100.0 31 .............................. AGCGCCACACCATCGCCTCCCACCTCCGGTC 90067 30 100.0 31 .............................. AGGTGGTGGGTGGTGTCGGTGAGCTCTCTGC 90006 30 93.3 31 ............................GT GTCACCGGCGCGGTTGATGTCCAGCTCCAGC 89945 30 100.0 31 .............................. AGTTCAGGGGCACATAGATCAACTGCACGTC 89884 30 90.0 0 .....................G.C.....C | ========== ====== ====== ====== ============================== =============================== ================== 7 30 97.1 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : GCGAAGAAGATGCCCGTACCTTTCCGGATATAACTGTCCGTAATCAAGCAATATCGGAGAGTTGAGGCGGTCTTGCCGTTGGTGGTTCGCCGATGGTCGGCGGTTGTACCGTCGCCGAACAGTCGCCGCCGGGGAGGGGCCAGGGAGGAAAAGCCCAGCTCCTGGGGGTGAGGTGCGCTCTTGTGATGGAGGCGGCCCTGCTCCCGTGGTCGCCGTGGGCATTGTTTTTCGTGGAGCGGTCGTGGGCGGGCGAGGGGTGCGAGAGGGCGGCGGCGCTCTCCGCGTAAGTGACTTCTCAGCTCTCCGTGACGGCCCCGACGTGCATCAGCCTCTTGGTCCTCGCGTCCCGGCTCTCCTTGCTTTCCTGTCCCTTGGTGCCGAGACTCTGCATACTGGCGCCTGTGGCTGACCAGATCACTGTCGTGACCTCCACGTTATGCGGAGCTGCACAAGTTGCAGATTTCCGGGTTACTCGTGGGTAGACATGCAGGTCAGTAAGA # Right flank : GACACCGAAAACCCCACCGGAGGGGATCCGGCGGGGCGGAACTCCGTGTCAGCGTCTGCGGTACGGGCGGCTCAGCTCGAACCGACCGTCATCGTGCCGGTCGAGGGAACCGTCCGGTGCGCTGCCGCGTGGGGGAGCCGTGTGTGCGCTGGGGGTCAGCGCACCCAGACCTGCCAGGTGCCGTTCTTCTCGCACTTGAACTCGGAGAGGTCGTCGTTGCCTTCCTCGTAGACGTAGGAGTACCCCTCGAGGAAGCAGGTCTCGTAGTCGCCGAAACCACCGGCGAGCTCCCAGTCCGATGCGGAAGCGGGGCTTGCGGCGAACGGGAGGGCCAGGGCGGCTGCTCCGACCGCGAGGCCGGCGGCGATGCGCTGGGACCAGGACATGTAATTCCTCCAATGTGTGGATTTCTGTGGAATCTCCCCACGTCTGGTGAGGAGAGATCAGTGTTTCCCGCGCTCGAGGGGACGGCCCTGTGCGAGTGCGAGGAAGTCCCGGTA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 92905-92449 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAY01000021.1 Nocardiopsis kunsanensis DSM 44524 contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 92904 29 100.0 32 ............................. TTCGTAAGGGACGGCCACTGTGACGTCGTGGT 92843 29 100.0 32 ............................. ACGGCCGCGAGCGCCCCGAGATCGGCCGGCTG 92782 29 100.0 32 ............................. CGCAAGCGCGACATCGTGTCCCTGGACTGCCT 92721 29 100.0 32 ............................. CGCACCAGCTCAGGACCCTCCTCCCCGACCCA 92660 29 100.0 32 ............................. CCCGAGTGCCATGCCTCGGCAAGGGCCTCCAG 92599 29 100.0 32 ............................. AGGTCGTTGGTGAATGCCACGGGGTAGCCCTC 92538 29 100.0 32 ............................. AGGTCGTAGACCAGCAGGCAGTTGACGATCCT 92477 29 79.3 0 ............AA.........TCAG.. | ========== ====== ====== ====== ============================= ================================ ================== 8 29 97.4 32 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : CGACATCTCGCTGGCGATGTTCACACAGGTCGGCGCGGCGGCCCCCGGTGACATCACCGCCCTGGACACGCACTGGATCTGGCAGGACGGTCAGCGGCTCACCCAGGCACCACCGCAGATCCGGGACGGTGCCGTGCGGGTTCCGGACGCGCCGGGGCTGGGGGTGAAGCTGGACCGTGAGCGTATCGACGAGGCACACGAGCTGTACACGAGGGAAGGGCTCGGTGCGCGGGACGACGCCGTGGCGATGCAGTTCCTGATCCCGGGATGGGAGTTCGACCCGAAGCGCCCGTGTATGGCGCGGTGAGGGGCCGGCGCCAGGCTTCGGGGATGCCCGGGGCCGGACTCCGGCCCCCGGCGGGGCCTGTTCTCCGGAGCGGGCCCCCGTCATACTGGGTGCTGTGTTCGTGTGGCCTGTCGGCGTTGCCCGGGTGTTATTCGGAGGTGCACAATTTGCAGATTTTCGGGTTACCCGTGGGTAGACATGCAGGTCAGTAAGA # Right flank : CGCCCCGTCGGCGTCCACCAGTTCCGCGTAGACGACGACGTTGTTGGTGTATCCGTGCTCGTCCTGCTCGAACGTGCCGCCGCACGTCACCAGCCGCAGCTCGGCGCGGCCCCCGGTGGACCCGTAGACCTTGCGGGTGGGGAAGTCGTCCTTGTCGTACTGCTCCACGCCGTAGACCTCGAACACCGCATCGACGCCGTCGGCGCGGGGGACCGTGACCTCGTCACCGGGCTGCAGCTCCGCGAGACGGAAGAAGACCGCCGGCCCGGTCGGTGAGTCCACGTGCGCGCCGATCACCGACGCGCCCTGCTGGCCCGGAGAGGCCCCCGCTTCGTACCAGCCCACGGTGTCGGGTTCCGCGGGCACGTCCAGCTCCCCGTCGGAACGCACCTGGAGCGGAAGAAGGTGGTCGGTCTCCACGTCGATGGCTGGGACCCGCAGGCCGGCGGGGTCGGAGGACTCCATGATGGGCGTGTGGGGGTTCTCCGGCCTTCCAGTGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 103908-102838 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAY01000021.1 Nocardiopsis kunsanensis DSM 44524 contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 103907 29 100.0 32 ............................. CGCATCTTCACCACTGTCACTGCTCAGGTACA 103846 29 100.0 32 ............................. GGCAAGTGGGAGGGTCGTGAACTCGGAGAGCT 103785 29 100.0 32 ............................. TCGTCGCCGGTGGTGCGCTTGATGCCCCGGTC 103724 29 100.0 32 ............................. AAGGCATGCCCGATCGTTTTCCGCAACGCAGG 103663 29 100.0 32 ............................. TTCGTCCCAGCCGAGGTCGCGTGCGGCGGCGA 103602 29 100.0 32 ............................. CCTCCACCCGAGGGGGTGAACGGCTCGGGCTC 103541 29 100.0 32 ............................. CACACGTTGACGTAGGGTTTGACCCGGCCGTC 103480 29 100.0 32 ............................. GACCTGGAGGATTCAGCCGACAGGGACGACGA 103419 29 100.0 32 ............................. AAGGCGGTGGGGCGCGGCGTGCTCGAGGTCGG 103358 29 100.0 32 ............................. CCCGGCAGGTCTCTGAGCTGGAGGTCGATGCC 103297 29 100.0 32 ............................. CGTCCACCCCCACAGGCGCCCCCACAGGCCCA 103236 29 100.0 32 ............................. AGATCGCCCAGCGCCGCCACCACGCCAGGGCG 103175 29 100.0 32 ............................. ATCGAGCCCGTTGGTGCCCTCCACATACATCA 103114 29 100.0 32 ............................. ACGGCGTAGCTCCTGCCCGTAGGCGCTGGTGT 103053 29 96.6 33 ............................A CATTGTCGGTTGGTCGGGCGTGCTCGGAAACTC 102991 29 100.0 32 ............................. CAGCGCCAGCCACCACACCTTCTTCCAGTGCT 102930 29 100.0 33 ............................. ACCCGCGTCGTCACAGTAAAGGTCCGCGTCGGC 102868 29 93.1 0 .....................G......T | A,A [102841,102844] ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.4 32 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : TCGAACGCGCGGACGCCCTGGAGATCCTTCCCGGAGCGCCGGCCGACTGGCTCGACCATCCGGAGGGGATCCGGGTCGAGCAGACCCCCACCCGCTTCGGGCGTGTGAGTGTGCGGGCCCACCGGAGCGGGGCCGAAAGTCCGGGGACGGTTGCGATCGAGGTCGAGAAGAGCTCCCGGAGCCAGGTCTGTCCGCGTGAGTGCCTCCTGCATCTTCCGGGGGAGGGGACCTGGCGGGTCGAGGTCAACGGTGTCGGTATCGGTACCCGGAGAGGCCCCGGCCGGGTACCGGTCACGGACGCGTTCGGGCGATGACCGGACGGGGGCGTTCCGGGGGCGGGGCCGGTGCCCGGTTTTCTGCGGCCCTGTTCTCCGGAGCGGGACCCCTGCATACTGGGGGTTGTGTTCACGAGGCCTGTTGGCGTTACCTGGGCGTTATCCGGAGGTGCACAACTTGCAGATTTTCGGGTTACTCGCGGGTAGACATGCAGGTCAGGAAGA # Right flank : CCCGCGTGCCCGGGCTCACCGCTTGCCGAAGCTCACCGACCCCGTCGTCCACGCACGCGCCTGCTCCGACAGCGTGATCCCGAGGCCGGGACGGTCCGGCACCAACATCCGACCGTCCTTGGTCTCCAAGCGTTCGTTGAACAACGGGTCCAGCCAGTCGAAGTGCTCCACCCACGTCTCCCGCGGGTAGCAGGCCGCCAGGTGCAGGTGGATCTCCATCGCGAAGTGCGGTGCCAGGTCCAGGCCGCGTTGGTCCGCCAGGGTCATCAGCCGCAGGAACTGCGTGATGCCGCCGACCCGCGGGGCGTCCGGCTGGATGATGTCGCAGGCGCCGCCGTCGATCAGCCGCTCGTGCTCGGCGACGGAGGCCAGCATCTCCCCGGTGGCGACGGGGGTGACGAGGGTCCGGGCCAGCCGCGCGTGGCCCTCCACGTCGTAGGCGTCCAACGGCTCCTCGATCCAGGTCAGGTCGAACCCCTCGAGCCGCTGGCCCATACGCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [23.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 109637-108753 **** Predicted by CRISPRDetect 2.4 *** >NZ_ANAY01000021.1 Nocardiopsis kunsanensis DSM 44524 contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 109636 29 100.0 32 ............................. CTTCAGGACAGCCGCCGCCGGGAGAATCAGAA 109575 29 100.0 32 ............................. ACCTGGATCTTGACCGGGTGGAATACGGAGAA 109514 29 100.0 32 ............................. GTGAGTTTCCGCGTGGACGCCGGCGCGGGTGT 109453 29 100.0 32 ............................. CGGCCGAAGGCATCTGTCCACCCCTCTCTCAG 109392 29 100.0 32 ............................. GCAACCGGCGCATGAAGGCGGCCCGCGAGAGC 109331 29 100.0 32 ............................. GGCCGATCGTCGCCGAGTGCGAGCCCACCCCG 109270 29 100.0 32 ............................. ATCCCCGCTGATGTCCACCCACTCTCCGTCGA 109209 29 100.0 32 ............................. ACCACTGTGGTGCCCCCAATCCTGAGCCATAT 109148 29 100.0 32 ............................. GAGCCGCGTAATTTCCGCGCGGAGGTCCGCCA 109087 29 100.0 33 ............................. GAGCGCATGCACCTACGATCCCGGGCATCAGCG 109025 29 96.6 32 ................T............ GTCACGCGGCCACCCCCTCGAGGGCGCCGGCA 108964 29 100.0 32 ............................. GACCAAGGCCGAATGCAAGGCGTTCGCTGATG 108903 29 100.0 32 ............................. AGATGGGAAAAGGGCGGAAACCTCCCAAAGCG 108842 29 96.6 32 ...........G................. TGTCATGCCCCTCATGGCCTGCTCGGCGGCCC 108781 29 75.9 0 ...................A.CCCAC.G. | ========== ====== ====== ====== ============================= ================================= ================== 15 29 97.9 32 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : CCCTTCCGACCCATCGGAGCCTTCTGCCGCACCGAGCCCGCCGAACCCGCTGAGCGCGCGGTGCTTGCCGGAGGGGAGGCTGCGTGATGCTGGACATCCGTACCGCTGAGTTCCTGGACGCGGCCTGCGACGCCTTGGACGTGCCACCCGGCCCGCATCCGGTCGCCGATTTCCTTCTCGTGCGTGGGCTGCGCCGTCGTGCCGAGGTCGTGCGCCAGGCGCTGGCGTTGGCCCGGAGCGAGGGTGATGTGGAGGAGGCGTTGGAGCTGCTCGACCGCGCACTGTCCGATCCTCCGGTTCCCGGGCGTGTGAGCGAGTGCGATCTCATCGACCCGGGGCCGCGCTGACCTCTGGTGCCTGGGGCCTGTTCTTCGGGGCGGGCCCCTTGCATACTGGGGGCTGTGTCCTCTGAACCTGCCGCCGTTGCCTTCCCGTTATCCGGACCTGTGAAAGTTGCAGATTTTCGGGTTACTGACGGGTAGACATGCAGGTCAGGGAGA # Right flank : GATACGCACCGGGCCCGGCATCGACCCGCCGGTGCTCGCGAGGCGTTCCCGGCCGCGCGTGAGCAGGCTTGGGAAGGTGAGTACGCGCGCTCCTGGTCGACCCGGTGAGAGGACCGCACCGCCACCCTGACCGAGCGCGGCGACCTTTCACAGCTGCGGTCGTGCGACCGGGGTCGCACGGGTGAGGAAACGCCGATGGAACACATGACGGAAGCCCGGGCCAGGCGCAACGTCATACGCATCGCGGTGATCGCGGGGGTCGGGGGACTCCTGTTCGGCTACGACACCGGGATCATCTCCGGAGCACTGCTCTTCATCAGGGACGACTTCGACCTGTCGGCGTTCCAACAGGGCGTGGTGACCAGCTCGCTGCTGGTGGGGGCCGTGTTCGGTTCCCTGTACGGCGGATGGCTCTCCGACCGTTACGGGCGAAGAACCGTGGTCCTGATCGCCGCGGTGATCTTCGGCGTGGGCGCGCTGATGGCCGGGCTGGCCCCCAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //