Array 1 56328-56619 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAKJVF010000231.1 Clostridium neonatale isolate LF22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 56328 28 96.4 37 ............T............... TTGAGCATCAAACTGCACATTGGGACAAAAAGATTAA C [56352] 56394 28 100.0 38 ............................ ATATATATAATACAATTGCCTATTTAATTTTAGGTACT 56460 28 100.0 38 ............................ ATAAATGCTGAAGAAGTCTCTTTATTAAAAGAATATGC 56526 28 96.4 38 ...............T............ ATTGTGTATATCCCTTATCTATTGGATTATTAGTAGTA 56592 28 71.4 0 ......T.....T..A..TA.A..AA.. | ========== ====== ====== ====== ============================ ====================================== ================== 5 28 92.8 38 GATTAAGATTAACATGAGATGTATTTAA # Left flank : ATCTGATAAATTTATTTGCGCCAAAAATGCCATTGCTTTTCCCTCATTATCCAAAGGATAATCTTCAATACATTCTAAATATGGACATCCTCCCAATTTACTATCCCAAGGTTTAGTCTCTTCAATTTTAAATGTTATTTCATTACTATACCTAGTATTCTCCATGATAATAGCTTCATGCTCTTTTAAAATCTCAGGAATCTCATATTTAATCATCCCATCAACCCTCCAAATGAATATTTATTTCTATGCTAATTATAACATATCTTGTAAATAAAACATTATCCATAATCTAAATAGACCTGCTCATTTCATTAATTATTTACCAGGCCATTTATTTACTTTTCGGTTTAAATTAGAGTGACAAAGCCACTTTAAGCACTTTCCTCTATTGCTTGCATCAATATATAATTTCGTTGGTAAATTTTTAAAGAATATGCTACTATAGTCATATACAGAGAATTGCTGAATTTAAAAATGGCTTATTTGCGTTGGATTAA # Right flank : AACTTTAGTTAAGTCACCCAAAGTTTTTATTCTACTTATATCCAGGTAAATACGTAATATTTTTGCCACTATCCTCAGATATAGTTAATTTAGACAATTACCAAGTAAAAACACCTAAAAACCAAATAAAACAATAATTAGATAAATCTAGTAATTTTACTTGATCGTATTTCTACAGACTCATATATTAAATCATTTTATTTATCTATTTTTGCATATTTTTTCAATATTGCACTGAATTTTATTAAATAATTAATTCCCCAAAAGATTAATATAAAAAACAATAGACATAAACTTGAATTATATTTATCCCAAAAATAAATTACTATAGATACAAGTATAGCATTTAAGCAACTAAAGAATAATTGCATTTTAAAAAATTTATCATTAACTATAATAAAATTCTTATCCTTTATTGTGTAAATAACTTTTTTATTAAAATAGTAAATAATATTATAAATAACAAATAATATTGGCATAATTACACCACATATAATAAA # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.64, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAAGATTAACATGAGATGTATTTAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:78.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [2-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 127-602 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAKJVF010000279.1 Clostridium neonatale isolate LF22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 127 30 100.0 37 .............................. CTTAATCCATTGTTAAAAAATGTGTTTTTGTTTGCAA 194 30 100.0 36 .............................. AAGATTTGGTTCATTAGATGTTATACATGGATAAAG 260 30 100.0 19 .............................. GTTACAAACATGAACGCTT Deletion [309] 309 30 83.3 37 ATGC.C........................ CTAATAAGAATTCCATTCACCTTCATTATATTTACTT 376 30 100.0 36 .............................. TATTCGAACCATTCTTTTAATTTTGTCTTGCCAAAT 442 30 100.0 34 .............................. GAAAAACTCATATTTTCCTTAGAACGCTTTGCAA 506 30 100.0 35 .............................. AATCCATTAGATTTCATATCTTTATCATCACAAAC 571 30 80.0 0 A.....A...G....T.....A.......G | A,A [591,596] ========== ====== ====== ====== ============================== ===================================== ================== 8 30 95.4 34 GATTAAGATTAACATGAGATGTATTTAAAT # Left flank : TGCAGATAACGGGATTGATTTACAGTCTACTATTGCCAAATTAGGACTAGTAGCTTAAATTTTTCCTATTTACTGCACAAGTCTAGTAAATTATATTGAACAAGTTGTTATTAAAGAAAATAGTTAG # Right flank : GTATGAAAAATGGTAATAAATAAGCAGAGATAAAGAGCATAATATTCTTGATAAAATCAAATTTTAAACCTATTAACAGAAAGGAAAAACTGCCTATGCTAAATAAAATTGCATTGATTGTTATAGATATGCAGAAGGATTATATTGGAGAAGAAAGCAGACATAATTACTATCCTAATACACTTATAGATAAGGTTAATGAAAGAATTGCCATAACAAATAATAATGGACAAATGATTATATATGTTAAGAACAAGGGGAAGCGAAAAAAGGAAATATATATATCTGATTTTGTGAAAGGATTATCTATTGCTTCAAACTTTATTATAGAAAAAGGCAAAGCAAGTATGTTTGATGATGATATTTTCTTTGAATTGTTAAAAAATAAAGATATATGCAAAATAGAGACGATGGGAATTGATGGAAAATGTTGCGTTGCTTCTTCTGCCTTAGATGCAATGAAATTAGGTTTTTCAGTTATTTTTCCTTTAGAGTATATT # Questionable array : NO Score: 5.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:-0.14, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAAGATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 20836-22444 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAKJVF010000280.1 Clostridium neonatale isolate LF22, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 20836 30 100.0 34 .............................. AGATGATCCTTATGGATATGATGGAATGGAACCA 20900 30 100.0 34 .............................. TGTATGTGGGAGAGCTTGATGTAAATATAATTAC 20964 30 100.0 35 .............................. ATTTTTTGAAGCTTTTTTGAAGGCTTTATAGGCCT 21029 30 100.0 37 .............................. ATCGATATGATATATAATGAAATAAAAAAACTTCCAG 21096 30 100.0 35 .............................. CCCATGCTGAATTCTTCCATTGCATACCTCATAGC 21161 30 100.0 36 .............................. CCATCTTTAATAGATTTGTTGTTAAATGTATTTGGG 21227 30 100.0 36 .............................. TATATAGCCTTATAGTTTTCTGCATTAACTTCTATT 21293 30 100.0 37 .............................. GAAAATTTTAGGGCATGAAAGCCCTGAGACTACTCAA 21360 30 100.0 36 .............................. AACCATGACATATTTTCATTAAATTTTATTTCATTA 21426 30 100.0 36 .............................. TGGCAGATGATGTAGCAGAAGCATTTCTTAACCATG 21492 30 100.0 37 .............................. TAGCCTTATTGAATTTACCGCCTTTAACTACATAAGT 21559 30 100.0 34 .............................. GGATTAAATCCTGATGATGGCAAAAATTTAAGAA 21623 30 100.0 36 .............................. TCATATTCATATGTTTTATTTACAGCTTCCACTAAT 21689 30 100.0 35 .............................. GAATTAAATGTTTTTATCCAATACTCATATGATTC 21754 30 100.0 35 .............................. CTGCTTTCCATGATCTATTAACAAGCTTTTTATTA 21819 30 100.0 36 .............................. ATTTTGAATAAAAATCCAATATTCCTATTTTATAAG 21885 30 100.0 36 .............................. CGACCTTTTATTGAAGCAACTGCCCTAGTAATTCCG 21951 30 100.0 37 .............................. AGAATTGTTTTAATTAATTGTTCTGCTCTTTCCTTAC 22018 30 100.0 37 .............................. AAATAACAAGCTGTAATATAGATTACTTCTTCTATTT 22085 30 100.0 36 .............................. AGAATATACTATACCCAAAGGTTTCCATAATGGATT 22151 30 100.0 36 .............................. ATAGAAAGGACTAGGTATAAACCTAATCCTATACTA 22217 30 100.0 36 .............................. TCTCCTAACCTAAATATTTATCACTATTTTCATCTA 22283 30 100.0 35 .............................. TTACAAATACTTTGTTTTAGATTTTTGCTAAGTGC 22348 30 100.0 37 .............................. CCACAAAGCAGAGCAAAGCTTGGAAGTTTGGCGTTAG 22415 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 25 30 100.0 36 GATTAAGATTAACATGAGATGTATTTAAAT # Left flank : ATTGAAGGATATTATTTAAATAGTAATGGTGCATGGACAACAAGTATCCCTGCTCAAATACAAAATACGAGTGTAAATACAGCCTCAACTGTTGCTAATAATAATGTTTCAACTGAAGTTATAAAGAATGCATCAGATACAGTTTATGTATCTAGCAAAGGAATATATCATAATACAGCAAATGCTCATGGAATGAAAAATTCAACAGCTATGAGCAGATCAAAAGCACAAGCAGCAGGATATAAAGCATGTGAAGCAAAACATTGCCCATAAAAATAAAAGCTTGTGAAATAATCATTGATGTTTTATTAAAGTATACATTGTATTTACCAAGCGATTTTAATTTATAATTAGGTAAAACACTGCAACAATAGTGACTTTATCTGAGTTCATTATAATAAAAATGAAAAAATAGAAAACACTTGGTAAATTTTTTGAAGAATAGCGTTATTTCTTGGATAGAAGAATTCTTTTATTTTTAGAATGGCTATTTTTCTAAG # Right flank : TATGATTAAATACCTTTCTAATTATTATGTAAAATATTAAAAAGATAAAACTAATGGCTTTATAATACAAAAGGATTTTTTATAAAAATAAAGGAGTCTGCAAGATGTATATAGACAAAATTAAATCTAAAAAAGTATTTAATGATTATGTTGAGAAGTATGATACCAGCAATGAAAAGATAAAATTAAAAATAGATCATACATATCGTGTAAGTGAACTATGTGAAAAAATAGCATCAAGCTTAGAGATGACAAATGAAGAAATTGATATTGCATGGCTTACTGGACTGCTACATGATATAGGAAGATTTGAACAGGTAAGAAGATATGGAACATTTAATGATTTTAAGTCAATTGATCATGCTAGGCTTGGGGTAGAGATTTTATTTGAAGAGGGTAAAATAAGAGAATTCATTGAAGATACAAGTGAAGATGAGTTAATTAAAAATGTTATTGAGTGTCACAATTCGTATAAGATACCTGAATATTATTCAAAGCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAAGATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-83.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 2 33565-34507 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAKJVF010000280.1 Clostridium neonatale isolate LF22, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 33565 30 100.0 34 .............................. AAAAATAAGCCCTATAGGCTACCAAATATCGTAT 33629 30 100.0 35 .............................. GTTGAAATCAATGTAGTTCAAGGTGAAAGACAAAT 33694 30 100.0 36 .............................. CTTTATTGATAGCATTAGTTTTTAGCTCTTCGAATT 33760 30 100.0 34 .............................. ATGAATGTTCTTCAAGAGATAGGAGACCTTTAAC 33824 30 100.0 36 .............................. TGAATTAATGTTTTTGCTGTTTGATCCAAAGACATA 33890 30 100.0 36 .............................. TTGTTAGGTGAAGGTTTCCGCTTCCCAAAGAAAAGA 33956 30 100.0 36 .............................. GAAGAAGATTCTCAAAAAGTTGATGACTTGGAGAAT 34022 30 100.0 36 .............................. AATACTAATCCATCAACAATACCCCAGTCACCTAAA 34088 30 100.0 35 .............................. TGGCTGATAATGAACAAACAGTATTGGTCAAAGAA 34153 30 100.0 36 .............................. AACACCAGCAAATGCTGATGCAAGTACAATAATAGC 34219 30 100.0 35 .............................. TTTCTAGCAAAGTCCCCCATAGGATTAGATATTTG 34284 30 100.0 35 .............................. AATTTGCAAGGTGAGGAAATAGAGATGGCTTTTAA 34349 30 100.0 33 .............................. TCTTTAAATCACATATAAAGCTATCTTTTAGCA 34412 30 100.0 36 .............................. GAGTATTATTATATCTATTTTGTCCTATAGTTAATT 34478 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 15 30 100.0 35 GATTAAGATTAACATGAGATGTATTTAAAT # Left flank : TTATATAGAATCTTTTTTTTCATAATGTGAGAAGTTTTTATTTTAGTGACTTTGTTCTATAAGTATGATTGTATTTACAAATAAGCAGCCTAAAAATAGTATAGGCATACATTTGATAAACAATAAAGAAAATTTCAATGCCAATATTGAATATATAAATATAAAGGCTCATCAATCAAAGAAAGAAGCAGTAAATATGGCACAGGATATGGGAATTAAGGAGTGTATATATTTTTATTAGGATAGAAAATAAAAACATATTTTAATTATTAGATTTGGAATGATAAATTAAAAAAACTACGAGTTGAAAATTTCAGAATAAACTTTTACCAAGTGGCTTTATGAAGAAATGGGTTTAATGCCCTGATTAGTGGAGGATTAAGCTCATTTATTTTTTATAAAAATGAATATAACAATTACTTGGTAAATTTTTGTGAATATGCTATTATTTCTAGTATAGAAGGATTTTTTGATTTTAAGAATGGCTAATTTTCGTTGGA # Right flank : TACTTGACTTGTGCATTAATTTAAGAAAATTTACCATTGGATTTTTATTGATATTTTACCAGTATAATTTTAAATAAAAAAGTAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAAGATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [73.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //