Array 1 24740-26535 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXPH010000037.1 Nocardiopsis dassonvillei strain ATCC 23218 W7515_37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 24740 29 100.0 32 ............................. GGCAGCAGGTCCTCCAGGGAACCGCCGCCCCG 24801 29 100.0 31 ............................. CACTCGCCTTCACTCTGTCGAACGACCGGTC 24861 29 100.0 31 ............................. GTCTGATCACGTCTATGGTGGTCGGTCTTCG 24921 29 100.0 32 ............................. TTCACCCCCCGGCGTCCGGTGACCCGTGCTCC 24982 29 100.0 32 ............................. CGCACGTCGATGCTCCCCGAGACGCGGCGGGA 25043 29 100.0 32 ............................. CCGGGGCGGGTCACGGACGTGTACCTGCTCCA 25104 29 100.0 32 ............................. CCGGGGCGGGTCACGGACGTGTACCTGCTCCA 25165 29 100.0 32 ............................. GCCATGCTCGCGTCCGAGACCCGCAAGATCCA 25226 29 100.0 32 ............................. GTGACGTCGTCGGGCGTGTAGAGCTCGCGCTT 25287 29 100.0 32 ............................. ACTTGCCCCCCGTTGGCCCTACTGCTGTCTCT 25348 29 100.0 32 ............................. GCGTTCATCAGCTGAGGCTCACCGGCGGCGGG 25409 29 100.0 32 ............................. ATCCCGGCCAGCCCCCTGCTCAGGTTGCCGCT 25470 29 100.0 32 ............................. GGATTGACGGGGTTCGTAGCCGGTGACGATTC 25531 29 100.0 32 ............................. GCTCAGCCCACTGAGGGCTGAGAGGTCACCGC 25592 29 100.0 32 ............................. AGCATCATGCCCGTCTGTGCGGGGGAGCCCAC 25653 29 100.0 32 ............................. CCGCAGGTCGAGAGGTACAGGTCAATCTCGGT 25714 29 100.0 32 ............................. GGGCGACAGACCACCCGGCTACCAACCGTGTC 25775 29 100.0 32 ............................. GAGGAGTTCGCCTACGCCATCGCTGGGTCGGG 25836 29 100.0 32 ............................. TACGGCCAGCCGGTCGGTCCCTACCGCATCGC 25897 29 96.6 32 ........................G.... TGCGCGGCCACGTACCCGGCGAGGTCGATCAC 25958 29 96.6 32 ........................G.... GGATGACGCAAGCCGAGATCGTCCGGGCCACG 26019 29 96.6 32 ........................G.... CCATCGACAGGGGCACACGCCCCGCCGACCTA 26080 29 96.6 32 ........................G.... GCCATCGCGATCGCCGCTGTCCTGGGCATGCA 26141 29 96.6 32 ........................G.... GCGACCCCCGCTGACGCTCCCATCGTCGTCTC 26202 29 96.6 32 ........................G.... CCCCTCCAGCGCAAGCTGGGCGTGGACGCTGA 26263 29 96.6 32 ........................G.... ATGATGGTGGTGGCGTTGGACGCCGGGGCGGG 26324 29 96.6 32 ........................G.... ACATCGACCTCCTCACCGCAGAATCCCCCCAC 26385 29 96.6 32 ........................G.... GCCGTCAGCGTGGAACTCAGAGGCGTATGGGA 26446 29 100.0 32 ............................. CGGGCCATCTGCATGGCGGCCTCTTCGGCGAC 26507 29 86.2 0 ........T.T.T...........G.... | ========== ====== ====== ====== ============================= ================================ ================== 30 29 98.5 32 GTGAGCCCCGCGCACGCGGGGATGAACCG # Left flank : GAACAGGGCTGAGGCCCTTCCGGGGTGAGCCCGGACGGATCGTGTGGATGGGTGTTGGGCAGGCGTGGGCGTACGTGTGGCCGGACGGCACCGTCACCGGCGGCGGTGATCGTGCCTTGGGTGAGGAGTTGGGGCACGCCTATCGGATGCTGCGGGGCGCCGGGTTCCCGGGTCTGGAGAGCTTTGTCCTGGAAGCCGTCGCTGGTCAGGATTCCTGCCGGGTGGGGTGTGCGGCCCTGGAGCAGCACTGGGATCACTCCGTATCGCCCTGACTTTCTCGTCTTGCTCATCCTGCTCGTAGTGCTCTTCAGGGCTGTTTCTCCGGGCCGGGGGCCTGCGACCGCAGCCCAGGCATGGAAAGCCTGTGTGCCCGGCGCGGTAGTGGGGATGAGCGCCGCCGTGCACTGTGTGAGGATGTACGTCGAAGCCGGGAGTGCTCAGCATGTCCAGGGCCAAGGTTGCGGCGAGATAACGGCCCGCGTTGCCGCAGGTCGTTAAGC # Right flank : GGTGACCGTGAGTGGCCACTGTGCGTTCGTGGCGAAGCGTGGTGTTCTCGGGGCGGCGGACGCAGAGAACCCCACCTACCGAGAGGGAGGTGGGGTTTGTTCGCTGTGCCCGAGGTCAGACGGCGGGGTTCTCCGTCATGCCGAGCTGACCGAGGTCGATCCGCTCGGCGCGGCGCGCGAGCAGGTACAGGTGCCCCGAGGTCCGGTCCATCTCGCGGATGAGCGTGAACCCCTGCCCCTGGTAGTACTTCGCCAGCTCGGGGAAGAAGCACCCTTGCCGCACCCACTGGCGGTCCTCTCGCGCCGCCCGGTCCACCGCCCACAGGTCGATCAGGGTGCCCGGCTTGTGCTCCCGGTAGTCGGGGTGGGTGCAGGTGGAGAACAGGTACAGGCTCGGCTCGTCGGCCTCATCGGGGGTCCAGTCCTTCGGCGGCGCGTGTTCGGTCACCGTCGTGCACCCGACGACCCGGTCTTCGTCTTCGAGCACCCACATGAACCCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAGCCCCGCGCACGCGGGGATGAACCG # Alternate repeat : GTGAGCCCCGCGCACGCGGGGATGGACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,2] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGATCCCCGCGCCAGCGGGGATGAACCG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 13101-13494 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXPH010000067.1 Nocardiopsis dassonvillei strain ATCC 23218 W7515_67, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 13101 30 100.0 31 .............................. CCGCGAACGAGATGCTCATGGGCGGCGGGAT 13162 30 96.7 29 .............................C TCCAAGCTCTGACCCAGCTCACGCCTGAA 13221 30 96.7 31 .............................G ACGACGGGGTCGCTGCTGCTGGCCAGGGTGG 13282 30 93.3 31 ............................GA TCCTCCTGCCGCCGCCCTGGGACGCGATGAG 13343 30 100.0 31 .............................. CTTCTCGGGTCATTGCACTTTCTCCTGTTCT 13404 30 96.7 31 .............................A GGACGGAGCGCGGGTGCGCCTGGTGTGCGGG 13465 30 93.3 0 .........................C...C | ========== ====== ====== ====== ============================== =============================== ================== 7 30 96.7 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCT # Left flank : CGAGCCCGACCGGGTCGAGGACGTGGAGGCCTACCTGCGGGACTACGCGCGCCGCCAGCTCACGGTGGTGCTCACGCCGCGGTTGATGCGGTTGAGGCGGATGGTGATCGGTGAGGTCGCGCGGTTCCCGGAGCTGGCGCGGGTGCTGTACGAGTGCGGGCCGCAGAGGGCGATCGCCGGGCTCGCTGAGAGCTTCGCCCGGTTGGGGGAGAGGGGGCTGCTGGCGGTGGGGGACCCCCTGCGGGCGGCGTCCCACTTCAACTGGCTGGTGATGTCGGAGCCGGTGAACCGGGCGATGCTGCTGGGGGACGAGGCCATTCCGGCGGAGGCGGAATTGTGCCAGCATGCGGAGGAGGGAGTGCGGGTGTTCCTCGCGGCGTATGGGGTTGACGGTCGTTAGGGGAGTTGTGGGGCGTTTGGGTTTTATGGGGTCGGTGTCTGTTTTTCGGGAAGTTGGAAAAACAGGCGCTTGCCACTGGTAAGTTCGCAGGTGGTTGACT # Right flank : CGATCGCACCAGCGGCAGCTACCTCCTTCGTCACCCCAGGCCCGGCACACCCGCTCACATCCGGTCAGACGAAGTACCGCGCCTGGAGGCGAAACAGCTCGGCGTAGAGCCCACCGGCCCGGCTCAACGTGTCGTGGGTGCCGGTCTCCACGACCCGGCCGCCGTCCAGGACCACGATGAGATCAGCCGCCCGGGCGGTCGTGAAGCGGTGCGTGACAAGGACGGTCACACCGCCCTCCTGGCGGCCCAGGTCGGCGTACTGCTGGAACAGCCGCTCCTCAGCCCGTGCGTCGAGGCTGGCGGTGGGCTCGTCCATGATCCGCAGCAGCGGCGCCCGCCGCATCGCCGCACGGGCGTTGGCGACCGTCTGCCACTGGCCCCCGGACAGCCCCTCGCCGTCCCACGACCCGCGCCCGAGCCGGGTGTCCAGGCCCCCGGGCAGCGAGGCGAGGAGCCCGTCCCCGCCGACCGTCCGCAGCGCCTCGATGACCCGCTCAGGG # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18775-19475 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXPH010000067.1 Nocardiopsis dassonvillei strain ATCC 23218 W7515_67, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 18775 30 96.7 31 .............................A AGGCCACCCACTGCTGGCAGGACCCGCGCAC 18836 30 100.0 31 .............................. AGTCCAACAACGTCACGGACGCCCCGTACTT 18897 30 96.7 31 .............................G CCATCAACGCCGCCGCCCGCTCCGGTGGTAT 18958 30 96.7 31 .............................A AGAAGTTGCGCGGGCGCTGGTCCGGACTGGT 19019 30 100.0 31 .............................. GGTGCGTGACCGGTGCGCCCAGATGGTCGAC 19080 30 96.7 31 .............................G GTCACCCTCGGCCCGGCATTACGGGCCATCC 19141 30 100.0 31 .............................. CAGGCCGCCGACCCTCGCGCGGCCCGCCACG 19202 30 96.7 31 ............................T. ACCACCCGAGACCGCTTGGCCATCGGGACCG 19263 30 96.7 31 ............................G. GGGTCCGAGGTCGGCGGGCGGGCGGTCCTCG 19324 30 93.3 31 ..................A..........G GCACGGCACCCTGGACCGCCGCTGCGTCATC 19385 30 96.7 31 .............................G GGAAGCCCACCGGCACCGTCCGCAAGGTCGC 19446 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== =============================== ================== 12 30 97.2 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : TCGGCCACACGCCGTCCGAGGAGTTCGCCCATATGACCGAGAAGCAGCGCAGGGCCATGTTCCTCGCCGAAGAGCTCCTGCCCGGTCTGCCGGACGACTTCGAGGCCCTCGTGGTGGAACAGCGGCCCCGGAAGCTGACCCGTGAGGGAACCGCCGTGGACGCCCACGACTCCACGCTGTTCGCCCGCCGTCGACGCTGAGAGCGACCGGCACGAGGCGTCTTGATGGGGGCCGACGGTCCCGGGAGCACCTTTGACGGGGCGTTTTCGGGACCTGTTGTCTGCGGGAGCTTCGGGACCGCGGTATCCCCTTCTGTTGGTTGGTGATGTCGGAACCGATGAGCCGGGTTATGTTGCTGTGGGACAAGGTGGTCTCGGGGCGTGTGGCCTGGTGGCGATTGAGGGGTTTTGTTGCTTATGGGGTTTTGGTGGTGCATGTCTGTTTTTCAGGAAGTTGGAAATTCGACTGCTTGCCATTGGTAAGTTCGCAGGTCGTTGACT # Right flank : TACTTCCCCACCGGCACCGCGCCGCCGCCCGCCTCCGCGCGGGCCCTGGCGGCCTCCGCGCTCCGGCTGCCCTACCAGTTCACCTTCCCCAAGGAACTGGACCGCGCCATCACCGAACTCGAAACCGACCTCGTCCTCGCCTGGCAGACCAAGGACGCCCACTGGATCGCCGAGGAACTCATCCTCTTCCTGGACGAGGACGACCGCGCCGAACTCACCGGATTCCGACTGCACTACACCCCGACCGACGGACTGGAGGTCCACCGTGCCGACTGACGCCTCCGGGCCAACACCACCCCCACCGCGACCCGCGCCCCCGCCGACGCTCCCGCCCTCCTTCGACCTGACCAGCCGACCCTGGGTTCCCGTCCAGCGGCTCGACGGGACGGAGGCCGAACTCTCCCTGACCGGGGTCTTCGAGCAGGCCGCGCGGATCCGGCGCCTGGTCGGGGACGTGCCCACCCAGGACTTCGCCCTCCTGCGGCTGCTCCTGGCGATCC # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-15.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 26340-26986 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXPH010000067.1 Nocardiopsis dassonvillei strain ATCC 23218 W7515_67, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =================================== ================== 26340 30 100.0 35 .............................. CCTCGGGGGCGCTCTCCAGCTTCGCCACGCGCGCG 26405 30 96.7 32 .............................A AAACCCTTACTCAGCAGGGGTTTAGGCGTACA 26467 30 100.0 31 .............................. AGCGTCGTCGACCCCAGGCTGACGGAGGTCT 26528 30 100.0 31 .............................. CTGCGGTTGCGGGGTTGTCCGCGAGCGGGAG 26589 30 100.0 31 .............................. CGGACCGCCACGTTATCCCGTGGGCCGAGCT 26650 30 96.7 31 .............................T GGCCGTTCGAGGGTGAGCGCGTTTACCTCGG 26711 30 93.3 31 ..............T..............G CGGACCGGCCCACCCGGCTGGCGACCGTCGC 26772 30 96.7 31 .............................G CCGTCGCCGCCTACGCGACCGCCCTCGGGCT 26833 30 100.0 32 .............................. ATGCGGCAATCCACCCCACAGAGAAGCCCGTG 26895 30 96.7 31 .............................T CGATGACCGAGGTCGACGGCACCGGGTCGGA 26956 30 96.7 0 .............................G | T [26983] ========== ====== ====== ====== ============================== =================================== ================== 11 30 97.9 32 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : GGGGTGAGCTGCTGGAGTCGGGTTACAGCTATGCCGACGAGGTGGTCTGGTGACGGTCGTCGTGCTCACGAACTGTCCGGCCGGGCTGCGCGGGTTCCTGACCCGGTGGCTCATGGAGATATCGGCGGGGGTGTTCATCGGCAACCCTTCGCGCCGGATCCGGGAGGCGCTGTGGGCGGAGGTGAAGGAGTACGCGGGGAACGGGAGGGCGTTGCTGGCGTACAGCGACGACTCCGAGCAGGGCTTCACCTTCCAGACCTTCGAGCGTCACTGGGAGCCGGTGGACCATGAAGGGCTCACCTTGATGCATCGCCCCAAGAAGGTGCAGGAGGAGAACAGAAGGCCTCCGAAGAGCGGGTGGAGCAAGGCGTCGAAGAGGCGGCGCTTTGGTGGGAGGTGAGTTGTTTTGGGTGCTTTGATGGATTGTGGTGCGGGTGTCCGTCTCTGAAGAAGTTGGAAAAACGGCCGCTTGCCACTGGTAAGTTCGCAGGTCGTTGACT # Right flank : GAGCGCGAACGGGCAGCCCATGGTCAGGTGATGGCGTCGATCGGTAACAGGAACGCTTGTTCCCGGGTTCGAGCAACACCATCAGCCTTCTCGTCACCGAAATGTCGATGAGGTTCAGCAACGGCGCCACGGGCGAGAGTGTTGGCGGCTTCGGAAATGCCAGTGGATCGGCCACCAACTCGTCAGTGAGCATCGGCCGCGGTCAGCGGGCACACGGTGAGCGTCACCGCCAACGCCGCGGGCAAGGGGCGCCAACGGTGCTGGCCCTGCCATGGCGTCTGGTCGAAGGCCGACGAGGGCCGTTTCAAGGCCGAGGGGTGCCGCGGCACTCGGCTTCGCCGGTCGGGCCCGCAGGTGTGACGCCGATCAGCGACGCACCATCCGGACCAGGGCGGCGGTGTCGTGTCGGCGGAACCAGGCCGCGACACAGACCAGGACCAGGGTGACCGCCGGGATGGCGACCAGGTCCGGGGTCACGATGGCGCTCAGGGCCGTCGCGC # Questionable array : NO Score: 5.95 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.79, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 34059-34759 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXPH010000067.1 Nocardiopsis dassonvillei strain ATCC 23218 W7515_67, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 34059 30 100.0 31 .............................. GAGAAACCGCTCATGAACTGGAGAAACACAT 34120 30 96.7 31 .............................C GGGGCCGTGGTGTTGGACGCCGCGGATGTGG 34181 30 100.0 31 .............................. CGGACGCGGGCGATGACTTCTTCTGCGTCTT 34242 30 100.0 31 .............................. CGTCGGCCTTGACCATCATCTGCACCCCGCG 34303 30 96.7 31 .............................C GGCCGCCGGGCCGCCGCGGTGGCCAGCTCCT 34364 30 96.7 31 .............................G AGGCGGCGCGCGCGGACCCGTCGTCGCTGTC 34425 30 96.7 31 .............................A TCCCGCGTGGCGCTGCCCTCTACCTGCGCGG 34486 30 96.7 31 .......................A...... ACTGGCGAACCTGCTGGAGGACCTGTCCGAC 34547 30 100.0 31 .............................. GCGCGGCCGCCGCCTTGTTTGCCCACGTCCC 34608 30 96.7 31 .............................G GCAGTGGTGAGGGGCTCGCCCTTCAGGCCAA 34669 30 96.7 31 .............................C CTCCGTCCGTAGGTGGCCAACCACAGGAGCA 34730 30 90.0 0 ...............A.......A.G.... | ========== ====== ====== ====== ============================== =============================== ================== 12 30 97.2 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCT # Left flank : CAGGATCAGTGACGCATCCTATCCCTGTGCCCCGGCCTTCCAGCGACCTGCTGCACCGACCGCTTCCGCCGCTGCCTCGTCGTCGCCCGCTGGTCGGCCCGTTCTGCCCGGCCTGCGAGCACCCTTCGTGCCGTCGGCGTCGGGCCGCGCGCCTGCCCCGCCTGGGCGGCCACCGCTCTGAGTTCACTCGCGAGCACGCCCGGGCCGCAGTTCTCCAGCGGCATCACCCGCACCTGCTCATCTGGTTCGGTGAGCAGACTCTGTCCTACTGGGTGGCCTCGCCTGTCGGACTGACTGAGGTTTCCGAATCCGAGGTGCTGTTGCTCCTCGCGGAGCCGGTTTCCGTGAACTGAGGGGTTACCGGCAGGGGCGTGATGCGCTCCTGCCGGTATTCTGCGGACATGGTCTTCCCAGGGCTGAGTGCGTCGTCCGTTTTGTCTGCTTCTGAAGAAGTTGGAAAAACGGCTGCTTGCCACTGGTAAGTTCGCAGGTCGTTGACT # Right flank : TGGGAGTACGGCTGATGCCCTCCCAAGGCCTTCAGGGACAGGAGTCGTAATCCACGGACGCGCTTCCGGCTGCGGCGTCGTAGCACTGGCTGACCGGCGGTATCCCGGAGACACCCGGCACGAAGTCGGGGTCTCCGAAGGTGAGCGGGCCCCGCTCGGGAGCACCCGGGAAGGTGAGGACGAGCCTGTCGCCGACCGAGACCGGTCCGGGGGCCTCCTCCGGCTCGATCGGGCCCTCAGGAGTGGGCACCGTGAACAGCTCAGGCACGGAGGCGCTGTGGCCCTCGACCAGGTTCCCGACGAGCACGGTGAAGCGCACCCCCTCGGGGACCTCCTCCACGGAGCTCACGGAGAGGTGGAAGAGCGTCTCGTACGAGTCAGGGGTGGCCTGGAAGGTCGGCATGCCGTTCGGCGAGGTGATCACCTCCGCCAGCCATTCGGCGTTGGTGCCGAAGGGCGTCGGTTCCGGCATCACCCATTCCGTGTCGGGTCCCTCCGTA # Questionable array : NO Score: 5.66 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.54, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8410-8805 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXPH010000015.1 Nocardiopsis dassonvillei strain ATCC 23218 W7515_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 8410 30 100.0 31 .............................. ATGACTTGTCCGCTGAGAGTGAGCCGTTGCT 8471 30 100.0 31 .............................. CCGACGGGTTACTGATGAGCTTGGCGCGCTG 8532 30 96.7 31 .............................T CCGCGTCCGGCGCGGTGAGCTGGGTGGGCAG 8593 30 96.7 31 ..G........................... CCTGCGTCTGCGCCTGGAGGGCGGCCAGCTG 8654 30 93.3 31 ..G..........................C TCGGCGCGACCGTGGGCAACCTGGTGACGGC 8715 30 93.3 31 ..G..........................A GCGCTGGGCGCATCCAGGTAGAGGACAAGGA 8776 30 93.3 0 ..G.........................A. | ========== ====== ====== ====== ============================== =============================== ================== 7 30 96.2 31 GTTCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : AGCCGGTCGGTGTCCTCCTGGCCGTACTCCGCGATCCGCTCCCGGTCGAAGCCCTCCAGGGCCCGCCGGTAGTTCTCCCGCTTGTTGAGCACGGTGGACCAGGACAGCCCGGCCTGCGCGCCCTCCAGGACGAGCATCTCGAACAGGTGCGCGTCGTCGCGGGAGGGCCTGCCCCACTCGTGGTCGTGGTAGGCCACCATCAGCTCGGAGGACCCCCGTGCCCAGGCACAGCGCTGGTCGGACATGGCAGCTCCTCGGGGCCGGCGGCGGTGGTCGCCTCCATGGTGCCGCAGGTCGGAGACAGTCCGGACGCGACCTCCGGTCGGGGTGCGTTGCGCAGGTGTCTCGCTGGTCGCGGTCCTGATCAGTAGGGCGAGTGCGCCGGTCCTGTGTGTGAAACCATGGGATGGTTCGGACTTGGCTCTGTGGGTGAAATGCCTGTTTCTCGGGAAGTTGGAAATTCGGCTGCTTGTCGCTGGTAATTTCCCAGGTCAGTGACT # Right flank : GTGAGCAGGTTTTGCAGGAACTGAGAAGGGGCCGCCAGCGGAGAACGCTGGCGGCCCCTTTACGCGTGTTACCGGGAACGAACGCTGGTGAGGAACGCTGCCCACTCGGCTGAGGGCGCCTCCAGGTGACCGAGGTGACGGTTCTGCGTGTCACGGACGGCGGCACCGGTGCCGGTGTCCGCGACCTCGACGCAGTTGCCGCCGCTGGGCTGGCTGTAGCTCGACTTACGGAAGTTCAACAGGGTGGGAACTGAGGTCATGGTCTTCTACTCGATCATCTGTCGAAGGTGGTCGATCGTCTCGCCGGGACGGAGAGCGGCCAGGCGTAGGTGGTTCATCAGGTTTCTGTAGCGGGCGACCTCGTCGGGCTCCTCCAAGTAGATTCCATCGGTGTTCGTTTCCAAATAGACCACCGTGGGGTCGACCGATTCGGGGAACTCCAAGATGACGAAGGGACCTCCGCTTCCCGCGTTGAGCTGGGACGCGCGTGTCATCTGGAG # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : GTTCTCCCCGCGCACGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 24971-24574 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXPH010000017.1 Nocardiopsis dassonvillei strain ATCC 23218 W7515_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 24970 30 96.7 31 .............................T CCACGTCCTGCCCCGGCAGCAAGAACTACTC 24909 30 96.7 31 .............................A CCAGAACGTGATCCGCGGCGGCGGCATCGTC 24848 30 96.7 31 .............................C GCTCCAGCCCGAAACCCTGGCTCGCGCCGAC 24787 30 96.7 31 .............................T CACCGGTGGCCGACCCTTCCTGCACGCCATC 24726 30 100.0 31 .............................. GCGCCGACGGCGACGACTGGTCGCTCTCCAA 24665 30 100.0 31 .............................. TGGGTGGGGCCGGGCGGGGGAAGTGGAAGCG 24604 30 96.7 0 .........................G.... | G [24578] ========== ====== ====== ====== ============================== =============================== ================== 7 30 97.6 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Left flank : CCCGCCGCGCCAGCAGCGCGGTGGTCAGCCCGACGATGCCGCCTCCCACCACCGCGACGTCGACCTCCACGTCCTGGCTCAGACGGGGAAACTCCGGTCGGTTCTCCACGACCGTCCACACGCTCCTGTGCTGCATCCTCTGCCCCTCCCGATCAGGTCCAGACGCCGTCGGCCCCCGTGCGACGGACAGCGCCTACACCAGCTACCCAGCGTTCCCGGTCGCTACCGCCGGAGCCTCGGGTCGGGGCATGGACCCGCGCCGCTTCCAGAGCCGGGGGAGGGGTGCGTGGCGAACACGGGCTGGGCGAAAGGAGAGTGGTGGTGTGCGGTGGTTCCCCGGCAGAGGGGGATAGCGGTCTGTAGGTTGGGTCTTCTGGAGCTACAGCGTTTTGGTGGTTGGTGAGTTTTTGGTTCTCTTGGGGCCTGTGGTGCGTGTGTCTGTTTCTGAAGAAGTTGGAAATTCGGCTGCTTGCCGCTGGTAAGTTCGCAGGTCATTGACT # Right flank : ATCCCCACTGACTTCCGCGTTCGTCGTCCCCGGAAAACCGCTCGACGGCTTCGGGGCGACCTGACACAGTGGCGCACCATGACGGGTTCCGAACTTGTGACCGCCGCGGACGTGCGGCTCATGCAGGGGCTGGCGCAGCGCGTCACCGCGATCCGCCCCGACCTGGTGAACAGCGACGCCTCGTTCGGCGAGCTGGCCTGGAACTGGGGCCGGGGGCACGCCAGCGACGGCGCGACCTGGCCGCGTCGGCTGTGGTTCTCCGGCGGGGAACTGGTCGCGTGGGGCTGGCTCCGCCTTCCGCGCCGGGTGAGGCTGAGCGACGGCTCGGTCAGGGACGTCACCGGCGCCTACCTGATGCACCAGGTCCACCCCGACCACGCCGGGCTGGTCGACGAGGTGATCGCCTGGTACGACGCCACGGCGGCGGGCCTCGAACGCACGGTGCTGCCCAGCGCCGCCGACGGGTTCGCCCTGGAACGGTGGGCGGCGCACGGCTACGG # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-14.10,-14.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 42054-41780 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXPH010000017.1 Nocardiopsis dassonvillei strain ATCC 23218 W7515_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 42053 30 100.0 31 .............................. GGACGGAACGGGACCGCGACGGTCACCCTGG 41992 30 100.0 31 .............................. GGACGGAACGGGACCGCGACGGTCACCCTGG 41931 30 96.7 31 .............................T GGCCCTTGAACTTGACGGTGGTCACGGTGAC 41870 30 100.0 31 .............................. ACGGCGTCACCGTGCTCCTGGTCGATGCCGC 41809 30 80.0 0 .............G...A...G.CA..T.. | ========== ====== ====== ====== ============================== =============================== ================== 5 30 95.3 31 GTGCTCCCCGCGCACGCGGGGATGGCCCCG # Left flank : GGCGCTGGTGACCGACGAGATCTTCGGGCCCGTGCTGGTGATCCAGGTCTACGACTCGGTGGGCGAGGCCGTCGATCTGGCCAACCGCACGCCCTACGGCCTGTGCGCCGGGGTGTGGGGCGCCGACCGCGCCGAGGCCGTCGAGGTGGCGGGGCGGTTGCAGGTCGGCCAGGTCTTCGTCAACGGCGCCGGGTTCAATCCGGACGTCCCGTTCGGCGGCTTCAAGCGGTCGGGGATCGGCCGCGAGTACGGGCGCTACGGGCTGGAGGAGTTCCAGCAGACCAAGGGGCTGGTGTTCGGCGCCGACGCTGTCGGCTGTGGTGGATACCGCTGACGGAAGCGGTGCGGGCGGGTGGCCGCTACCGGGAGACGATCGAAGGGGCGCACTTCTCGGCCGGTATTCTGCGGCCATGTTGTTTCCAGGGCTGGGCGCTTTGTCTGTTTTCCAGGAAGTTGGAGAAACGGCTGCTTGCCACTGGTAAGTTCGCAGGTTGTTGACT # Right flank : CAGCCGCCGCCGGTGGGGAGGGAGGCGTTTCCAGTCCGGCTTCCTCCCCTCGGTCCGGACCGGGCTCGGCGGTCCCGGGGCCGGGAGTGGGGCTCGCAGTGCCGGAACGGTAGCGCTCGTCCTCGCGGAGCCAGCGCACCAGGGAGGCGGCGACCAGGCTCAGGATGAAGATCAGCGGGAAGGCGGTCACGACCGACAGGGTCTGCAACGCGTCGGTGCCTCCGGCCGACATCACCGAGACCGACACCGCGGCCAGGACGATCGCCCAGAGCACGCGGTTGGCCCGGGAGGGCTCGACCTCGTTGGGCAGGTCACGGGAGGTGGCAGAGCCCATGATGTAGGACGCGGAGTCCAGCGTGGTGGCCAGGAAGACCAGCAACAGCAGCAGGAACAGCGGGGTGATGATCCAGCTGAGCGGGAACGCCTCCAGCGTGGCGAAGATGGCCGGGACCGCGCCCTCGGCCTCCAGGGTGTCGACGATGGGCGCCTGTCCGCTCAGC # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGCCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.10,-12.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 49070-48735 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAXPH010000017.1 Nocardiopsis dassonvillei strain ATCC 23218 W7515_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 49069 30 96.7 31 .............................T ACGCATCCACGGCAAGCCGCCGCTGCGCGAA 49008 30 96.7 31 .............................C GCCGTCGGTCTTCTCAGTCAGGTCCGCGTAG 48947 30 100.0 31 .............................. GCTGTCCGTGGCCAGTGTCGGTTCCGGGGCG 48886 30 96.7 31 .............................T TCTTGGCGTTCATCGCTTCAGCTCCGGCAGG 48825 30 100.0 31 .............................. GGGTGAGCGGGTCCACGGCGCCGGTGACGAT 48764 30 96.7 0 .........................C.... | ========== ====== ====== ====== ============================== =============================== ================== 6 30 97.8 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Left flank : TGCTTGATGCCGCCGCCCGCGTACTTGTCGGTCCAGGGTGTGCTGCTGGCGCTCGTCAACACCCATGAGCGTGTTTTCACCCGCGAACAGGAGGAGACCAAACGGCTCCAGTTGTGTCTGGATGCGCAGGAACGGACTCAGAAACGCGCCGATCGTGCCTACTTCGGCACCGTGGACCGCCACACCAGCCCTTTTTGCCCGATTCGAAGGATGGTCCCGAGAACGGGAAGAACGGTGGCTCCTGATCACACCCGTTCCGAACCCATGCGATACCGCCCTGAGCTGTTCGAGGGATGCCTGGTTGGGGCTGGCCCGTCCCTGGAACCGTAATCCCACAAATCAAAGTTCGGTGATGGATTACCGGCAGGGGAGTGCTGTGCTCCTGCCGGTATTCTGCGGGCATGGTCTTCCTGGGGCTGAGCGCGCCGTCCGTTTTGTCTGTTTCTGAAGAAGTTGGAAAAACGGCTGCTTGCCACTGGTAAGTTCGCAGGTCGTTGACT # Right flank : GACCAGGCACCATGCGCGACATCAGCTGAGCGTCTGCGTCCCGATGACCGACAGCACCTGGAGCTTCTCGTAGCTCTCGGTGCCGGGGACGGCGGTGTAGACCATCAGCGAGTGCGCCTGCCCCGGGTCGACCAGCCTCTGGCAGGTCAGCTCCAGCGCGCCGACCTCGGGGTGGACGAAGTGCTTGACCTCGTGGGGACGTATCCCGATCTCGTGGTCGCTCCACACCCGCCGGAACTCCTCGCTGCGGGCCAGCAGCAGCTCGGCCAGCTGGGCGGCGGGGGACTCCGGGCCGCGGAGGGTGACGAGCTCACGCAGCCCCGCGGCGTACATCCGGGTCAGGAACGGGTGCTCCTCCGGCGCGTAGATCCGCCGGGATTCGGGATCGGTGAACCACCGGTACCCCGCGCTACGGGCAGGCCCCGTGTACCGCGTCGCGTCCCCGGTCAGCGCGACGCCCATCGGGGACTGCCGCAGGGTCTCGCCGAGCTCGGTGACGA # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //