Array 1 7937-6273 **** Predicted by CRISPRDetect 2.4 *** >NC_021810.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 41578, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 7936 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 7875 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 7814 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 7753 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 7686 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 7625 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 7564 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 7503 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 7442 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 7381 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 7320 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 7259 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 7198 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 7137 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 7076 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 7015 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 6954 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 6893 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 6832 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 6729 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 6668 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 6607 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 6546 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 6485 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 6424 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 6363 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 6302 29 96.6 0 A............................ | A [6275] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 25198-24194 **** Predicted by CRISPRDetect 2.4 *** >NC_021810.1 Salmonella enterica subsp. enterica serovar Heidelberg str. 41578, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 25197 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 25136 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 25075 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 25014 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 24953 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 24892 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 24831 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 24770 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 24709 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 24648 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 24587 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 24526 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 24465 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 24404 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 24343 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 24282 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 24221 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAAAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGCG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //