Array 1 992948-994013 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017977.1 Salmonella enterica subsp. enterica serovar Montevideo str. CDC 2012K-1544 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 992948 29 100.0 32 ............................. GGTCAGGCGATCATATTCGCGTGGATTGACGA 993009 29 100.0 32 ............................. GTTCAGGTTTCGCGTCATCTGACGTTGGTAAT 993070 29 100.0 32 ............................. TGTCCGCAATTGAGCGTTTCTCGGCTGATATC 993131 29 100.0 32 ............................. ATCCGAGTAGCTCAACTGGGGGATATCCCCAA 993192 29 100.0 32 ............................. GCGGTGCGGCAGGCGTTCCATGCCTCCATAGC 993253 29 100.0 32 ............................. TTCACCTTTCCCCACAATGTCAGAGGTTATTT 993314 29 100.0 32 ............................. ACCACTGTCCGCAATCTGTCGGCGAACTACCG 993375 29 100.0 32 ............................. GAGATCCCCCAGCGTGAATATCTGGGAGTGTC 993436 29 100.0 33 ............................. GCTGAATTGCTAAATAAAGCGGCCTGCGCTGCC 993498 29 100.0 32 ............................. ACGATTTATGAAATCCACCCGGTAAAAATGAA 993559 29 100.0 32 ............................. ATGATCCGTGAGGGGGTGGCAACGCACGCGTT 993620 29 100.0 32 ............................. GGACAGGTAACAGCGTGCTTGGTTCTGGTAAC 993681 29 100.0 32 ............................. AGTGAGTATCAACTCAACCTTATTGAAGATAT 993742 29 100.0 32 ............................. AAATAATTGCGCAGTTTTAAATGCCTGAATAT 993803 29 100.0 32 ............................. TCACAGTCACCGGTGATGACGGCGTCGTCGCT 993864 29 100.0 32 ............................. CGCAAATGAGCCAGGCGGACAGGCATTTTAAT 993925 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 993986 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGCGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCATAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGATGATAAAAAGTGCTTTATAAAGAACGATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGTTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1010149-1011642 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP017977.1 Salmonella enterica subsp. enterica serovar Montevideo str. CDC 2012K-1544 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1010149 29 100.0 32 ............................. GTCGCGGTGTGAGCGGAAAGCCTGGCGAACAG 1010210 29 100.0 32 ............................. CGAGCTCGTCAGGGAGGGAAAGGTTATCCGGG 1010271 29 100.0 32 ............................. GTAGGTAGCGCCCAATGGATGTTGGGGGAAAT 1010332 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 1010393 29 100.0 32 ............................. AAAACAACATTAATAAAAACCGGTTTAAGCGC 1010454 29 100.0 32 ............................. GAGTTGTTTTTCTTGCGGAGCAGGACGGCGTA 1010515 29 100.0 32 ............................. ATCCGATCCACATCAGCAGCCAGCTCTTTAAA 1010576 29 100.0 32 ............................. ACCAAAGCTCGATATCAGTCAATTATGGCCAG 1010637 29 100.0 32 ............................. GTTTATCTCTCCGTTATGTGTCGGACACCAAA 1010698 29 100.0 32 ............................. CCGGTCACGATTGTTCACCCCAAAAGCGGACA 1010759 29 100.0 32 ............................. CACTCTGCGTAATGGCAAATTCCAATTCTTTC 1010820 29 100.0 32 ............................. TTGACACAATAGCGAAATCAATTACTGAAAAG 1010881 29 100.0 32 ............................. GACGCCAATTATACATTGGCTCTATATGAATT 1010942 29 100.0 32 ............................. CTCCCGGCCGAGGCCGTGACGGTGAAACAGAA 1011003 29 100.0 32 ............................. GTACAGAAAAAAGAGGCGTCGCATGTGGCGAT 1011064 29 100.0 32 ............................. GGCCTCACAGCGGCGCCCGCTGGTCACGACCA 1011125 29 100.0 32 ............................. CCCGCCGTCTGTCACACCTGTTATGTAATTGT 1011186 29 100.0 32 ............................. TTATCCACCAGCAATCAGGGGCCGGATATACA 1011247 29 100.0 32 ............................. CAAACAGTGCATAATTCGCAAAATTTGCGCTA 1011308 29 100.0 32 ............................. GTTCCACAGGACGTTGAGAACGGCTTTATACA 1011369 29 100.0 32 ............................. ACGAGCACTGCAACGGCGAACTGGCAATGGCA 1011430 29 100.0 32 ............................. GAATTATTTAGTTGATCTGAAGAATTCAGGAA 1011491 29 100.0 32 ............................. AACAGTGCAACCAGAAAGTATTAAAAAACCAA 1011552 29 100.0 32 ............................. CAAAAGGCCGACGGTGTGTACACCTCTAAAAA 1011613 29 93.1 0 A...........T................ | A [1011639] ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCGCCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCTTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGTGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTCCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //