Array 1 450385-451672 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSNN01000005.1 Pseudomonas aeruginosa strain PA-W16 IPC1286_5.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 450385 28 100.0 32 ............................ AGATGACGAACTCGTCGAGGGCGCTCTTCATC 450445 28 100.0 32 ............................ CAGTCGCCGCTCTGCTGTTCTTCTGACAGGCC 450505 28 100.0 32 ............................ GTTACGCCTTGCGCAACATGCTATAGACCAGA 450565 28 100.0 32 ............................ AAGCTCCCCGATGGCCGTTGGTTCGTCGATGT 450625 28 100.0 32 ............................ AACGTCGATCAGATGAAGGGCGCGTTCGACCT 450685 28 100.0 32 ............................ AAGGAGCACCACGACATGGTCAGAGCAAACCC 450745 28 100.0 32 ............................ TCCTAGTTCTTCGCCAAGCCGGAAACCGAGGC 450805 28 100.0 32 ............................ GTAGGAACGCCATCCACTCGAGGTCATGGCGC 450865 28 100.0 32 ............................ ATCGCCGCCACCGTCGCCGCCATCACCATCCC 450925 28 100.0 32 ............................ TATACCCGACTTTTCAGCCCCGCCGCCCTCGC 450985 28 100.0 32 ............................ TGACGGGCCGATTTATGAATCAGCCCCCTTTC 451045 28 100.0 32 ............................ TGGGCGATCTTTTCGAGGTGGTAAGTATGCGC 451105 28 100.0 32 ............................ TAGAGGGCGACCTAGAGCTTGCGGCGCAACAC 451165 28 100.0 32 ............................ CGCACGGGGGACGAGTTCGCAGCGCATTCGCG 451225 28 100.0 32 ............................ ATGGATGTCGGAACATCCCAGGTCACGGTCGT 451285 28 100.0 32 ............................ ACTTCTGCGCCTGACGCGTCGGTCATGACGAT 451345 28 100.0 32 ............................ AAGAGGATGACGGTGAGCCGTGCCCGGAATGC 451405 28 100.0 32 ............................ TCGCTCTGCACCAGCGGCGCATTGGATCTGGT 451465 28 100.0 32 ............................ GACTTGAAGCCACTGCGCAGGCACGCCACCCA 451525 28 100.0 32 ............................ CTGCAGTGGAAGACCTGGGTGCGTCTCGCCCA 451585 28 92.9 32 .....................A..A... TGTCCCGAAGTTCATAAGCGGGCTTAGGGCGA 451645 28 75.0 0 T.........AC.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 22 28 98.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGTTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : ACGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGACGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGACGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCGTCCGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 461430-460201 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSNN01000005.1 Pseudomonas aeruginosa strain PA-W16 IPC1286_5.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 461429 28 100.0 32 ............................ GCGGGGCGTTTCAAGCCGGACGTGTACCGCTA 461369 28 100.0 32 ............................ AACTGCTGGTGGTGAGGCCGGCGTAGGTGCGC 461309 28 100.0 32 ............................ GATCAGCAAGACGTCGCGCGTCGTGATCGTTT 461249 28 100.0 32 ............................ ACAGTGACACGAGCCTGGCTGACCGACTCAAC 461189 28 100.0 32 ............................ ACGTAGTTCATGCACGCATCAAAACTGATCAG 461129 28 100.0 32 ............................ TGGACAATGCGCAGCCCAGGCGCTGGATTTAC 461069 28 100.0 32 ............................ AGAGAGCGCGTAACGATGCGAGCAGAAAGAGA 461009 28 100.0 33 ............................ TGTACGCGGGCGTCCTGGCTGATCAGGCTCCAG 460948 28 100.0 32 ............................ TGCTCGACCTTCTGTTCCCAGGTGGCGATGGC 460888 28 100.0 32 ............................ AGGAAAAGCTCGCACGCTGCGCGGATGAAGAG 460828 28 100.0 32 ............................ TGGCTGTTCGTGCTGGTGTCGATGGCCGGCCT 460768 28 100.0 32 ............................ TCTGGCTGGGCTGGAGTGACAGCGGACTGGTC 460708 28 100.0 32 ............................ AGCGACGGGTGCATGGGCTTGTCGACCGCCCA 460648 28 100.0 32 ............................ TCGGTACCGCTGGCAACCTGCTGAGACGCATC 460588 28 100.0 32 ............................ TTAAGCCACGCGTCCAGATGGCGCAGGCAAGG 460528 28 100.0 32 ............................ TGATAAGTTCGACGGGCCGTTTACGCTGAGAG 460468 28 100.0 32 ............................ TACGTGCGGTTCTGCGCCGCGCCGGATGACGA 460408 28 100.0 32 ............................ TTACAGATCGGGTGCTCTTCCATGGTGAACCT 460348 28 100.0 32 ............................ AGGGAGGGACTGCGTTGCGGGCCTGCTATGAC 460288 28 100.0 32 ............................ TCCGGCACCGTTCATCTCCTCCTCGCTCCAGA 460228 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 21 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTGGCATCGCCCATCACAGGACCTTTCGCGCCCGAACGGCACGCTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : CTCGAACCCACCTCGGCTACAACAGCCACCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCGCTACCAAACATCCGAATATAAAGTTTCTACCCCACCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGCAAACGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCGCAGAATTCGATAGATCCGATAGGGGCAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCGAACTGAAGACGATCCTTCACTCCAAACGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACTTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 109218-107631 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSNN01000003.1 Pseudomonas aeruginosa strain PA-W16 IPC1286_3.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 109217 28 100.0 32 ............................ TGATGGACAGCATGGGGGCCGAGTTCAGCCTC 109157 28 100.0 32 ............................ AAGAATACCATCCATATATCACCTCATGCCGA 109097 28 100.0 32 ............................ TTGTTGGTTCCTGTGATCTCGTTGCCCTCGTC 109037 28 100.0 32 ............................ ATGGTCATTATGCGAAGCCATGGGTCAGAGCG 108977 28 100.0 32 ............................ ACTCGCAACCGCTCTTCAAGCTCGGCAATCTG 108917 28 100.0 32 ............................ GATCAAGGGCAAGCGCTTTCGCAAGCGGTTCA 108857 28 100.0 32 ............................ TGGAGCCCGCGAAAGTGGCTCGGTTGCGTAGC 108797 28 100.0 32 ............................ ATCGCCGCCACCGGTGTTACCGCCATCACCAC 108737 28 100.0 32 ............................ CGGCGAAGGCCGGCAGCGAAGTCGCGGCAGTG 108677 28 100.0 32 ............................ GCGAACTGATCGACAGCCTCGGCGTGCCGCAG 108617 28 100.0 32 ............................ ATCACCGCCATCGCCCCCCGGCTCAGTCGGAT 108557 28 100.0 32 ............................ TTGGTGACGTGTTCGGGTGGCCGTGATGGCTA 108497 28 100.0 32 ............................ AGCACGTCGGCGCCGCCGCGATCGACTGGTTC 108437 28 100.0 32 ............................ TGACCAAACACTCCAGCCAGCGCGCTCGCCAG 108377 28 100.0 32 ............................ TCACCACCGCCGGAACGCTACATCCTGCTGGA 108317 28 100.0 32 ............................ GCCGACTGATCCGGACGAACCTCCGTCCGATC 108257 28 100.0 30 ............................ ATGGGAATGCTCTCCTGGCACGAAGAAACA 108199 28 100.0 32 ............................ GCCCGCTGGGGAAGCCGCAGTTATCCGGAGTA 108139 28 100.0 32 ............................ AGGTTGACCAGCATGGCCGGCATCGACAGCGT 108079 28 100.0 33 ............................ ATGCAGCCAGGGCTTACTCCGCTGCTGCTGGAC 108018 28 100.0 32 ............................ TTGAGCTTGTCGTTGTACTCGTCGAGGCTCAT 107958 28 96.4 32 .............T.............. ATACTGACTCAGCCAGGGAAAAGTCACTTGGA 107898 28 96.4 32 .............T.............. AGCGTGCCATGGCGGCGGTAAGTCAAACCGTT 107838 28 96.4 32 .............T.............. TGGTCGAACAGATGGCGGTCCTCGGCCAACTG 107778 28 96.4 32 .............T.............. ACGTCGGAACGCAACTACCTGACCGCGTTGGT 107718 28 96.4 32 .............T.............. ATTGGCCGTGCAAGGTCCACCAGTCGATGCTT 107658 28 96.4 0 .............T.............. | ========== ====== ====== ====== ============================ ================================= ================== 27 28 99.2 32 GTTCACTGCCGTACAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCGACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCCTGAGGTCGGCGATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCACTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGTTGCATCGCCCATCACAAGACCTTTCGCGCTCGAACGGCGAGGCTCACCGCCCGTCCCGGTCCTCGCGAAACGGCCGCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGCAAGTTACGAGACCTCGAAAAAAGAGGGTTTCTGGCAGGAAAAACTCGGTATTTCCTTTTCCTTCAAATGGTTATAGGTTTTCGGGGCTA # Right flank : CTCAAGAAAGAGCAGAACGGCCAGCCTGCGCCGTTCATTGCCGTGTAGTCCCGTAGGGCGAATGCCGCCATAGGCGGTATCCGCCCTACGGATCGGGTTCCTGGCATCCACGAAGTGAGGCTTGCCCTCCAAGTGGTGGGGCGGCAAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGGAGGGGGACGAGTGGCAGGATGCCGCGAGAGCCGCCTCGGTCCACGAAGGACCGTGGCGGCGTGCCGCCGGGAGCAACGATGCAGCGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACAGAAAACAGCTTGAGCAGCAAACATGAAGCCCGCTCGAACGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATGCCCTGGAGAGCCGGCGGATAACCGCAAGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTAAGAAA # Alternate repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [38.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //