Array 1 2088377-2082549 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT576032.1 Propionibacterium freudenreichii isolate PFRJS2 chromosome I, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2088376 29 96.6 33 ............................G ACTCCGCGAAAATTGTGCGCCGTGCCAGATACG 2088314 29 96.6 32 ............................G CTCATCTTCATCGCGCCCTATTTGAAGGGTCC 2088253 29 100.0 32 ............................. GCAGTGGCGCTGCAGACCGCCTTGACCGGGTG 2088192 29 96.6 32 ............................T TCCGCAGCGGCTTCTATTGCACCCCCGAGCAC 2088131 29 96.6 32 ............................G GTGCTCATGCCGCACCGCCCTCGACCGGCTCG 2088070 29 100.0 32 ............................. GATCCCCTGGATCAGCGAGTTCACGATGCCAA 2088009 29 96.6 32 ............................T CAGTGCCGTAATAGTCGCGATATTGGGTGCCG 2087948 29 96.6 32 ............................G TGCACGTTCATCAGCTTGGTCACGTCAGCGTT 2087887 29 96.6 32 ............................T GCGGGTGTGGTGAACACCCCCGCCAATCCGGA 2087826 29 96.6 33 ............................T TGGTCGTCAACCTTGAACCAGGCCATCACTCCA 2087764 29 96.6 32 ............................T ATCGTGCTCAAGACTGTGGATGCTGCGGTCGA 2087703 29 96.6 32 ............................G GTTCAAGCTGCGACATGCCGCGCATGATGTTG 2087642 29 100.0 32 ............................. TGACACCGACCAGCTGGTGCTGTGGCGAATCC 2087581 29 96.6 32 ............................T TGGCCGACACACCCCTGGCGCAACAGGTCCGC 2087520 29 100.0 32 ............................. GACGCCCTCGCCTCGGGGAAGGGCACCGCCCT 2087459 29 100.0 32 ............................. GATCCCGATGCCACCGACGAGGATCGGGCCAG 2087398 29 96.6 32 ............................G ATTGCCCCCGACTCGTCGACCAGAGCGTTGAG 2087337 29 100.0 32 ............................. CCCTGCTCCATGGCATCCTCCGCCGTGAAGCT 2087276 29 96.6 32 ............................G GCCCCGCCCACAGCAGAGCCGACTTCGCGATT 2087215 29 96.6 32 ............................T TTCAGGTGGAAGGAGTAGAAGCGCTGAAAACA 2087154 29 96.6 32 ............................G GATTCCCGCGACAACCGGAACAAGCTGCACCA 2087093 29 100.0 32 ............................. CCGGATCACTATGAAGCGACCGGGCATCGCTG 2087032 29 96.6 32 ............................T GATCCCGTGGTGAAGATCGCCAATCTGGCGAA 2086971 29 100.0 32 ............................. GCCCCGGGCGGCGTCCCGAACGGCGGCCCGAG 2086910 29 100.0 32 ............................. GACCGGCCCGACGCCTTGAGCTCCTTGACGAA 2086849 29 96.6 32 ............................T GGCCGCCGGACCGCCCGCAATGCCTCCGGCGA 2086788 29 96.6 32 ............................T CTCCTCATGTAGGTGGAGGCGCGCAGACATTA 2086727 29 96.6 32 ............................T GAATATCCCCATCGCCGTATAAACGGGATCAT 2086666 29 96.6 32 ............................G CAGCCCGATGGAGCCCAGACCCTGAAAGGACC 2086605 29 100.0 33 ............................. GGCTGGCTACGTCCACTGCCCTGGGGCGTCCAG 2086543 29 96.6 32 ............................T CCCCACATCGCCCGCCCTCTTCGCCGGATCAA 2086482 29 100.0 32 ............................. TGCGCGTGTGGGATGCCGAAGTGGCCGGGAAA 2086421 29 96.6 32 ............................T ACAGGCCGGCCGCCAAATCGGCAGCGTCGAAA 2086360 29 100.0 32 ............................. CTATCAAAGGATTTTGTGATGGCGACATGGGA 2086299 29 96.6 32 ............................G GGCCGCGGCGATCTCGTTCTTCATCTGGACCA 2086238 29 96.6 32 ............................G GTCACCGTCGGATTCCGCAGCCAGATCCGCAC 2086177 29 100.0 32 ............................. CGGTCGGAACGCTAAATTTGTCAGGCCCGAAA 2086116 29 96.6 32 ............................G TCGCTGACCACCACGCTGGCCCACATCGGCCG 2086055 29 96.6 32 ............................T TGTAGACATTCGCGGGGCCTGCATTTCCGTAG 2085994 29 100.0 32 ............................. GCGACGGCCAGCTGGGACGACATCCTCACCCC 2085933 29 100.0 32 ............................. GTCCACCAAATACAGCTCTAGCGGCTCGGCGA 2085872 29 96.6 32 ............................G GAGGCCCCCATGCATGACATCAAGCCCCACCG 2085811 29 100.0 32 ............................. GATGCTGGCCGTCGATCATGCTGCCGTCATCA 2085750 29 96.6 32 ............................T GTAGGGCATGGCACCGACAGTTTTCGGAACGG 2085689 29 100.0 32 ............................. AGCTGAATGCCGGCAGAGATCAGCTGCGGCAA 2085628 29 96.6 32 ............................G CCCCTCGGCGTGCACGGCCCCTTCTGCCACGG 2085567 29 96.6 32 ............................T GCCGCCGGCGGCGCCACATGCCACACACCCCG 2085506 29 96.6 32 ............................G GATGCCGCCCAGGTGGATGCGATGGCTGAGGC 2085445 29 96.6 32 ............................G CGGGCCTCGATCAGGTGGCGCGTCACCGAAGA 2085384 29 96.6 32 ..............A.............. TCGGCGGCGATCTCTTCGCTGGTCATGTCTGG 2085323 29 100.0 33 ............................. AGTCCGTCCTTATTCTTCAATGCCACGACAATA 2085261 29 96.6 32 ............................G CAGCGTCCTGAACAGCGACATAAGCAGCGCCC 2085200 29 96.6 32 ............................T TCCGTGCAGACATCTGGCAGGCCCACGCGCTC 2085139 29 100.0 32 ............................. ACCTCCACACTGAACTGCGTCTGCCCGGATGC 2085078 29 100.0 32 ............................. CAAACAATCGGCCACGGTGGACCCGGAAAGGG 2085017 29 96.6 32 ............................T TGCCAGTCTTGAGCGCGGCGGAACTTTTCTGG 2084956 29 100.0 32 ............................. GGCGTCGAGGTGGCCGTCCACCTGGGCAATGA 2084895 29 100.0 32 ............................. ATCTTCGCCCCGAGCTTCCAGACGGCCACGCC 2084834 29 100.0 32 ............................. GCCGCCGCCGCGATCCCCAGCGGACCGCCCAA 2084773 29 100.0 32 ............................. CCGAATCAGCATACGGCACATTGAAAGCGCCA 2084712 29 100.0 32 ............................. CCGGGCTGCCGGCCGCTGGAGTGGGACCTGTG 2084651 29 100.0 32 ............................. ACCAACACCGACACAGGAAGGGATGTGCGCCA 2084590 29 96.6 32 ............................G CATGTGCCCCTTCACGGGGCTCGCGGGACGCT 2084529 29 100.0 32 ............................. CGGGCCGAGCGCTGAAGTGATGGCATTCATCA 2084468 29 100.0 32 ............................. GATGCAATCAACAAACTGGCGCCGGGTGACTT 2084407 29 96.6 32 ............................T CTGGTCGGCGCCGGGCATCTCCCACAGAAGGG 2084346 29 100.0 32 ............................. ACCGCCTTCGACATCGACGCCATCGCCGACGA 2084285 29 100.0 32 ............................. ACCGCCTTCGACATCGACGCCATCGCCGACGA 2084224 29 96.6 32 ............................T CAGGGGTACAAATCGCAGGACCTTTTTGGGGT 2084163 29 96.6 32 ............................G GCCTCTAATCTTGCAGCGGCTTCTTCGGCTCA 2084102 29 96.6 32 ............................T GCTGTACAACGATGTGCGTGTCATATTATTCC 2084041 29 96.6 32 ............................G CTGAGATTAAGCGGCTTGACGGTAATGATAAA 2083980 29 100.0 32 ............................. AACAAACCGACCTGCAGACCGGCGAACCCAAG 2083919 29 96.6 32 ................T............ GTTCAACCCATGGTGACGCGGAGGTTCCCATG 2083858 29 96.6 32 ............................T CCGATCTGGACGCCTCGCTGAGCCCCGAGGCC 2083797 29 96.6 32 ............................T CGAGTGAGTCCCGGCGCGGATCACGCAGCACC 2083736 29 96.6 32 ............................G GCTATTCTCTTCCGTCCCGAAAACGCTTGTTC 2083675 29 96.6 32 ............................T TCGAGCGTCGCCTGGAAGTCACCCCGAAGTGG 2083614 29 100.0 32 ............................. CTCCCCTGGGCGGAGATGCTCCACGAGCCACC 2083553 29 96.6 32 ............................G CGTAAAAGAGCGGGACCACACCGAACCCGCCG 2083492 29 100.0 32 ............................. TTCCGCCACGCACACCGCAAATGCAACGGGCA 2083431 29 100.0 32 ............................. TTAATGATAAGATTATCAATCATTATATGGTC 2083370 29 100.0 32 ............................. CATCCGACCAGTGCGGAGACTGCGACGATCAG 2083309 29 100.0 32 ............................. GGCATCGAGGTGGCCGTCCATCTGGGCAACGA 2083248 29 96.6 32 ............................G AACAATTGGGCGTCGGTGTCCCTCAGCGCCAG 2083187 29 96.6 32 ............................T GAATGACTTCCAGACCTGGATCACAGTGCTGG 2083126 29 100.0 32 ............................. ATAATGAAACTCATTCGAATAATATAGAGATT 2083065 29 96.6 32 ............................T GCCTCCCGCGAGTCCTCCGAGAATGCCGAGGG 2083004 29 100.0 32 ............................. TGTCAGTGTCGCGGGCAAGTGTCCACAGTTTG 2082943 29 100.0 32 ............................. GAACACCTTGATGATCTGGAGCTCATCAGGGC 2082882 29 100.0 32 ............................. GTGGGTCTTGAGGCGTCGTGGCCGGTGCTGCG 2082821 29 100.0 32 ............................. GGCGAGCTCCGCGACGCCTACCTGTGGCACGA 2082760 29 100.0 32 ............................. ATCCAGATGGCAATGGTGACGCCGCTCGTGAT 2082699 29 100.0 32 ............................. GAACACCTTGATGATCTGGAGCTCATCAGGGC 2082638 29 100.0 32 ............................. GCTTGATTCAGGTGGGCGCGAATGTCGGGGAT 2082577 29 82.8 0 ........................GGGTT | ========== ====== ====== ====== ============================= ================================= ================== 96 29 98.0 32 GTTCTCCCCGCATACGCGGGGGTGATCCC # Left flank : GGCTCACCGATGACGACTCCGACCATGAGTGGGACATTGTCGAGCTTTGGGATGACAAGGACGGGGTCGTGCCGGGTGGCCGGTCATGGAGTGAACAGCCATGATGGTGTTGGTGCTCACTGCCTGCCCGGCCGGTTTGCGCGGGTTCGTGACGCGGTGGCTGCTGGAGATCAGCCCGGGAGTTTTTGTGGGCAAAGTCTCTGCGCGGGTGCGTGAAGCCATTTGGGCGCGGGTTGAGGACCTCTGCCAGGACGGACGAGCAATTCTGGTGCACACGGCGCGGAACGAGCAGGGCTTTGACTTCAAAGTACATAGGCACGATTGGGAAGTTGTTGATCTGGAGGGCCTCAAACTGATGCGTCGCCCCAGAACCCCGGATCGTGCGTCCAGTGGCATGCGCTCCGGATGGAGCAACGCTGCCAAGCGACGACGGTGGGGTCGCTGACTCGGAACGTCCTCGTATCGGCCTTGAGCGCCAGTAACATGCGTAGTCAGGAAGT # Right flank : ACCCTGTTTTTTCGGACACCTGATGTGGCATGGCCGGTGGGTCGTGCGGGAAGGTGTTGTCATGGGTGTGGATCCGGAGCAGGTGCCGCGGAGGCGGCGGAAGTTCGCTGCGGAGTACCGCCACGAGGCCGCGAGGCTGGTGCTGACGTCTGGTCGCACGATCGCGGACGTCGCGAAGGAATTGGGACTCGGTGAGCAGTTGCTGGGCAAATGGGTGCGTGCGCAGAAAGAGACAGCTGCTGGTGATTTGTTGAGCGATGACGAGCGGGCCGAGCTGAAACGGCTCCGGCGTGAGAACTCGCAGCTGCGGATGGACAACGAGTTCCTGGAAAAAGCGGCGGCCTTCTTCGCGTCGAAGCGTCGGTGAACGAGAAATACTCACTGATGCGCGCGGAGAAGGCACATTTCAGCGTCGTGCGAATGGCCCGGCTGCTGCATGTCTCACGGTCCGGGTATTACACGTGGGTGAAGACGAGCGAACACCCTGCCGCATCGCCTCG # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.63, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCCCCGCATACGCGGGGGTGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATACGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2120759-2122610 **** Predicted by CRISPRDetect 2.4 *** >NZ_LT576032.1 Propionibacterium freudenreichii isolate PFRJS2 chromosome I, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 2120759 36 100.0 35 .................................... TGGTCGGCGCCGAGCCATTCCCGAAGGCCGTCCTG 2120830 36 100.0 37 .................................... CGCGGCCTGCAGCACTGTAACTCCGTGTGGGCTTGCC 2120903 36 100.0 36 .................................... TCCAAGAGCTTCAGATACTTCTCGTTCGTGACGTTT 2120975 36 100.0 36 .................................... CGACATTCGTGCTATGGTGTCATTCGTCGGGCGCGC 2121047 36 100.0 34 .................................... GACTGAATGGCGTCGAAATCCTCGAACATCTCGT 2121117 36 100.0 36 .................................... CACACCGTTAATCGTCAGAATACGTACAAGATGACG 2121189 36 100.0 41 .................................... GCCGAGCGCGTGGCAGCATATCAGCTGATCTCGGATGCCAA 2121266 36 100.0 35 .................................... GCCTTTTTGGGACAGTTTGGTGTTAGATTATGAAG 2121337 36 100.0 38 .................................... TGTCTTGAATCTCGAGCTCGGAGCCGATATCAAGCCCA 2121411 36 100.0 35 .................................... GCTCGGTGACGCCGCCCTGGCGATGCTGCCGACCG 2121482 36 100.0 34 .................................... GGGGCTGACGTTCTCCGTTGACGGCCAGCACAAA 2121552 36 100.0 35 .................................... GTGTTTGAACCGGTCAGACGGGTCATCACCTTGAC 2121623 36 100.0 35 .................................... AAGAATGGCGCGACCGTACGCCGCAACGGGCTGGG 2121694 36 100.0 37 .................................... ATTTATGTTTTTTCTCTGGTGATTTCTGCCGCCGCGA 2121767 36 100.0 39 .................................... GAGAGTGATTAGGACCCCAGCTGTGTAGCGGGGCCGCTC 2121842 36 100.0 38 .................................... CGTTTCAAGTCTGAGACTTGACCCACGGTGTGGGTCGA 2121916 36 100.0 36 .................................... CTGAAGGGGAGTACAGACATTGGTAAGCTCCTTATG 2121988 36 100.0 36 .................................... GCAGGAACAGACTCGCGCTTGGTATCCAATCGACCA 2122060 36 100.0 39 .................................... GCTTCCGTTGGTGAACACCATTTTGGTTTGATTCCACTC 2122135 36 97.2 38 ......................A............. TCGTCGTGGGCGCCGGGCACGTCCATCTATCTGGCAAA 2122209 36 100.0 37 .................................... TCGGCATGATGCCAGCGCCGATTATCGTGAGCGTATT 2122282 36 100.0 37 .................................... AAGATGAGCGGGCCGAGGGGTTCGACCCGGGACGCGG 2122355 36 100.0 38 .................................... GTGAGCTCGGGCTGAGCGTGAGCCAGACAGCGGCAAAG 2122429 36 97.2 36 .....T.............................. GCATTTGCTTGCCCATTTGCTTCCTCCAATCTGCGT 2122501 36 100.0 38 .................................... CGCACCAAGGCCCCGGCTCGGCGAGGGACGGTTGCCGT 2122575 36 94.4 0 ......T............A................ | ========== ====== ====== ====== ==================================== ========================================= ================== 26 36 99.6 37 ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Left flank : ATATAGGAATGACGGTCAGATGAGCCGACGAGATTCCCATTGCTTTCTGATCGCCTACGACGTGCCCGATGACCGTCGTCGCACCAGGTTGGCCACGGTACTGAAGGGCTACGGGGAGCGTGTGCAGTACAGCGTATTCATGGTTGATTGTCCGCCGTCACACCTGCTGGTGCTACGCCACGATCTCACCGACGCGATGGATATTGATGAGGACTCGGTGGTGATCTGCGACCTGGGCATGTCCACGTCGGCAGACGCCCAACGCATCACCTGGTTGGGCGGTCAGAGGTACCAGAGCGGCGGACGCAGCATCATCATCTGACGACCAGCGGCTCTGCGGCCCGGTTGTCACGCGGAGCCGCTCGCGTGATGTTTCCCCTTGTCACAAGCAGATTGCGCTGAAGGGGTCATCAATCCTCCACGCGCGAGCCATCCTTCTTCAGCACCGCTCGCAGGCGGCCGGTATAATGCCTAGTGGGAGCCCTGTTCCCACGCCCGCC # Right flank : CTTGCGCCAGCTCTCGGAGACGATGGCGCCTTGACGTGGCGTTGCCCCTCTCCCCGGGCGAAGCCCTCCACCCGTTCAACGTCCCGAAACTCACGGAACTCCCGCCGGCGCCGAGAGCTAGACTCGCCATGAGAAGGTGGGAGGTAGGGCAGACGCCCAGCTGACCCACCTTCCCTTTTTCGCACCCCCGGTGGCGCCAAGAGCCACCGATTCCGTCCAACCGCCCACCCTCTCGTCCACCCGCGCGAGGACCCGTCACCCCGATCAGCGCTCACTGACAAGGCCACGTGGCCGCGCACGAGCCCTAGGCGTTTCCGGACCTGACAGCCGCCATGACAAGGCGTTTTCGTCACGCACTGGCGATTCCGAGACGTGCCCCCACACAGCTCCCCCCGCTACGGTTAAATCCGGCGGGGCCGGCAAGGCATGCCCCCTTCATTGAGGCTGACGCCAATAGATGGGCATTTGCGACACCCGCCAAAGTCCCTCCTCACGGAGGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCCCCTCCTTCTGGAGGGGCCCTTCATTGAGGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-11.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA //