Array 1 18995-20704 **** Predicted by CRISPRDetect 2.4 *** >NZ_VSIE01000044.1 Vibrio cholerae strain N2808 NODE_221, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 18995 28 100.0 32 ............................ GGTTCGTTGAGAATCTGATTGTTCGAGAATCG 19055 28 100.0 32 ............................ AAACAGCCATGGACGAGTTGTACGGCACTGTC 19115 28 100.0 32 ............................ AAGCGAACGTGACGCTGTTCCCTCTTCCGTAA 19175 28 100.0 32 ............................ ATCCAGAAGACGCAAGGCCCGGCCAAAAATTT 19235 28 100.0 32 ............................ TTTAGGAATTGTCTAAATGCCACGTGTACTCG 19295 28 100.0 32 ............................ GGCCACACTTCGGTCATGCAATTGTTGAGGGG 19355 28 100.0 32 ............................ TTACCGTACGTATAACTCATCTTTTCGTCTCC 19415 28 100.0 32 ............................ TGACCGATTGCGATACGCTGCTCTACGTCGTC 19475 28 100.0 32 ............................ AAAAAGACAAAACCCAAAGAATGAGGCTTGGT 19535 28 100.0 32 ............................ TGCGACAATTGCTCTGCCAAATCCACAAGACC 19595 28 100.0 32 ............................ ATATTACAGTGTGGGACTATAAGAATGGCGTA 19655 28 100.0 32 ............................ TGTACGGTCGCCATTAGCGTCAAGCTCGTATA 19715 28 100.0 32 ............................ CGACACCTCACTACGCCCGACCACGGGCGTAT 19775 28 100.0 32 ............................ TTGCCGTTACGAGTGGTGAACTACGGTAAAAC 19835 28 100.0 32 ............................ CAAGGCAAAACCCAAATGAGCCAGATAAACAA 19895 28 100.0 32 ............................ GTGTCGCGGTGGAATACAATGTTCTTCGGTAT 19955 28 100.0 32 ............................ GCAAAGTTGTACACCGTGTCGTGAGAGTGTGT 20015 28 100.0 32 ............................ GAGCAGAGAGGCGTTCTCGCTCGCTTCCGCCC 20075 28 100.0 32 ............................ GATCGGTGAGTTGCGTAAAAAGGCCGCTAGCT 20135 28 100.0 32 ............................ ATAAGTCGACGTAATGCGCACTGAGAAATCAG 20195 28 100.0 32 ............................ TTTACCTGCCACCTTTCGGACTTCCCTTGGTC 20255 28 100.0 32 ............................ TGACATATCAACGATTGTTCAATTTTCAAAGA 20315 28 100.0 33 ............................ TTATTATGATAAGGGGGCATTCACCCCCTTGTA 20376 28 100.0 32 ............................ TGTTGCCGTGATCACATCATCAACGGTTATTT 20436 28 96.4 32 ...........T................ TGATTGGTGCCGCACTTGGATTTTGGATTTTA 20496 28 96.4 33 ...........T................ TATCTGGAAGCGTTGGCCTTTTTGGGGTTCCTT 20557 28 96.4 32 ...........T................ AAGCGACTGTGCGGACAGGTCCAATAACACAA 20617 28 96.4 32 ...........T................ ATTGTGTAAGGGTCGTTGTGCTTAAAGCGCTG 20677 28 85.7 0 ..........AT.............TT. | ========== ====== ====== ====== ============================ ================================= ================== 29 28 99.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GATGTAACTTATGTAAGCTTTGTACGCAAGCAGGTGAAATCGCCCGAACGAATAGAGCGGGATATGCAGCAAAAAGCCGAACTATGGGCAGCAAAATCTGGTAAACCGCTGGTGGAATGTTTAGTGGATTTACAACAAAGCAAGCCGACAGCGTTGTGCTCCTTGCCCTTTATTTACTTGCATAGCCAGCAAACCAAGCAACGTTCACCAGAAAAAAACAGCAAGTTCCCGCTGTTTATTGAGATGCAGCAGCAAAGCACATCTCAAGATGGGGGCTTCGATTGCTATGGTTTGAGTAGCAAAGCGAATGGGCAGTCAATGTTGGCTACTGTACCGCACTTTTAAATTGAACGAAAAAGGGTAGTTTTTACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATAGTTGCAACGGGTGATTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACATTCTGTTGCAGCTTGTTTTTATCGGTTTATTCTATT # Right flank : AGAAAGTAAATCAAACGAGGCAGTTCACTTTATAGATTACGTTAAGGTTCTTACGTTCTGCTACGCATGTTTATTAGGGTTTTCTTAAATGGTCTTTTCACAAGCATTAGTGACAAATTTCCGAGGTGTAATGATTAAGATAGCCTAGCTGATGAGTATCAGTTGAGGGGTAGTCACCATGAGCATTGTTGGTTGTGTTAATATCAAATCCAAGCATATCGATCGAACATGTCAGATGGTCTCGTAAGTCAAATTTTACTCAGAGCGAGTTTTGCGTCAATAAAAATCCTTTAAAATCATAACGTAATGAGCTATTGGATTACATCAGCTTCCATGTCTTAAGTGGAGGTTATATTCTAGATTATTTTCAATTGCCGAGTACCAGTCACAGATAGGCTACCTTTGGCGGCCTCTTCTATATGTCCGCTCCACCAGCTCATCATTGGCTTTCTGCGTTCTAAGTAGTCAGTGCGGTTATAGGCACTGCGTACCTGGTTATC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //