Array 1 854-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXG01000160.1 Salmonella enterica subsp. enterica serovar Corvallis strain BCW_2855 NODE_160_length_884_cov_2.50677, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 853 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 792 29 100.0 32 ............................. AAAGCGCGGATCAGGCTAACTCAATCAAATCG 731 29 100.0 32 ............................. CCGCTGACGGTGGCCGCACGTTAGATGCTGAG 670 29 100.0 32 ............................. CAGCGACACCACCCGCCCGGGGACATTGCGCA 609 29 100.0 32 ............................. AGCTGTCGCCTGGCGAGTGCTCGACGCTCAAT 548 29 100.0 32 ............................. AGTAGAGCTGACCGTTTCGCTGATTGCGCTGA 487 29 100.0 32 ............................. GTTTTGCGCCGCCATACCTGCCTGACCAACGG 426 29 96.6 32 ..............T.............. GTGGGGCGGACAGGCTGCCAGAGGCATTGGAT 365 29 100.0 32 ............................. TTTGGGAGGATCGTCAGGGACTCCCGCGCCCG 304 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 243 29 100.0 32 ............................. AATGGTCCGCAGCTCTGCGCGCAACGCCCGGT 182 29 100.0 32 ............................. CGCAGAAATCCGTAATCGCATGGATCAAAAGT 121 29 100.0 32 ............................. GCGTTGGCGTCGCCCAACACCATCGCCGGGGC 60 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : AAAAAGCGCCCGCATGATGGCGCGGTTACT # Right flank : GAACGCTGCTGGCAGTCTGACCCTATTGATTA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [26.7-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 371-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXG01000173.1 Salmonella enterica subsp. enterica serovar Corvallis strain BCW_2855 NODE_173_length_420_cov_1.8596, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 370 29 100.0 32 ............................. CGGGGGTTTCCACTCAAATACAGGTAGAACCA 309 29 100.0 32 ............................. GTTCCGTGTCATTTTTATCGCCAGCACGCCGT 248 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 187 29 100.0 32 ............................. AGGCACTGAATCATGAAAATCAGCCCTCCAAT 126 29 100.0 32 ............................. AACTAAACGCACCAATCAGAGGGCTTTTTGAT 65 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCCAGCGGGGATAAACCGAATCGCGCGCGCTGGCAGGGGAAATGATGGT # Right flank : GGCCGGCGGCAGTGGTTAATAAACTATTTTTTATCAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.24 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 84178-85425 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXG01000006.1 Salmonella enterica subsp. enterica serovar Corvallis strain BCW_2855 NODE_6_length_103907_cov_3.91514, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 84178 29 100.0 32 ............................. TGCCTCAAGATTTTGAGCGGACGGGAGCTGGC 84239 29 100.0 32 ............................. GATGCATGGGAGCACGGTAAACCACTGGCGCA 84300 29 100.0 32 ............................. CGCATATAAAGCTGGCCTTACCGCTGGCTGGA 84361 29 100.0 32 ............................. CCATACCATTTCCACTGGCGCAACGATTTTTG 84422 29 100.0 32 ............................. CGGGTGATTTTAATGATGTGCTGACTACCGGC 84483 29 100.0 32 ............................. ATAACGACCTTGAGACGGTCTCAGTTCGCTGG 84544 29 100.0 32 ............................. AGAATGTTCAGAACGATTATATTTTGATTTGT 84605 29 100.0 32 ............................. GAAATGGCGATAGGCTTAGAAACGGTGCTGTC 84666 29 100.0 32 ............................. GGGCTCATAAGTATTTCACTGACTGACTACGG 84727 29 100.0 32 ............................. GCGCTAACCCGCGTCATTTCATCTGACACGCC 84788 29 100.0 32 ............................. CTATTTACCACGTATTTATCAGTTCGACAAAA 84849 29 100.0 32 ............................. GAGGGGAATCACCGCCTCGCCGAGCGCTACGC 84910 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 84971 29 100.0 32 ............................. ATGCAGAAATGCGAGCGATGCACACGCCCCAT 85032 29 100.0 32 ............................. TTTCCGCAGATAGCTGCGAACGCCGGTTATTA 85093 29 100.0 32 ............................. GATGTAACGTCTCTCACCTGGCCCGGCGTAAC 85154 29 89.7 32 A...C.......T................ GGAATATGAAAATTATTATTTTTGCAACTGCA 85215 29 100.0 32 ............................. CGTTTCTCACCTTTTATTCCACAGCAGACGAT 85276 29 96.6 32 .................A........... GCCCGATCCCATCCTGGTATCGAGCCTCTGAA 85337 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 85398 28 86.2 0 .........A..T..........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 21 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 101972-103891 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXXG01000006.1 Salmonella enterica subsp. enterica serovar Corvallis strain BCW_2855 NODE_6_length_103907_cov_3.91514, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 101972 29 100.0 32 ............................. TCACTATGTTAGGTATTTTCAAAAAGAAAGCT 102033 29 100.0 32 ............................. TGGGCAAAGTCTGGTTGTGTTATTGGAAGACT 102094 29 100.0 32 ............................. CGCAAGAAAGAGAGCAGTTTGCTCACTACCGG 102155 29 100.0 32 ............................. TAGTCGCAATCGACTTTATTCAGTAATCAATA 102216 29 100.0 32 ............................. AAAAGTTACCGTTCCCCCCGTTTCAGAGAACA 102277 29 96.6 32 ............................A GTACCATCCTCATATCGTTTTTGAGTTATATC 102338 29 100.0 32 ............................. GGACGGGTAACAGCGTGCTTGGTTCTGGTAAC 102399 29 100.0 32 ............................. CCTTCAGGCGAGCATCCGTAAAATTCTAATGG 102460 29 100.0 32 ............................. AGGCCGGGTTTTTTGATGGTGTGGTGATGGCA 102521 29 100.0 32 ............................. CAACATAGCTCGTAGTTTCTTAAAGGTGATTT 102582 29 100.0 32 ............................. AGTTAATCGCTATCGATGCAGGGGGCGATTTT 102643 29 100.0 32 ............................. TTTGCAAATCTCACCACATACCAGGCGCGACA 102704 29 96.6 32 ............................T TGTCTGTAACTCATGCCTTCCCTCATCTGGCC 102765 29 100.0 32 ............................. GATACTGATGGTGGCAAGCTGCCTACTTTTAA 102826 29 100.0 32 ............................. GAGTGGAATCCTCAATATCCAAACGGGGAATT 102887 29 100.0 32 ............................. GAGGCGTGGGAGGTTCTGCTGCCGACAATCCG 102948 29 100.0 32 ............................. GGAGAGCGCCTTTTTGATAGCGTCAGTCAGGG 103009 29 100.0 32 ............................. CAAATGAAAAATGGTTTAAAGGAGGTCTGTAA 103070 29 100.0 32 ............................. CTCGGCATTCGCGCAACAACCCTGGTTGTCCC 103131 29 100.0 32 ............................. GCGTACGGGGCTAACCCGTTCCAGTTGCTGCC 103192 29 100.0 32 ............................. ATATCAGACTCGGAGCGCTTAACTTTGAGTGC 103253 29 100.0 32 ............................. CGCGATTTAACATTGATTCAAAAGGGGAATGT 103314 29 96.6 32 ............................A CCCATGAGCTGATCCGCAAGGCTGGCCGCAAC 103375 29 100.0 32 ............................. GTCATTGGCGTGGCTGGCGCAGCAATCGGCGG 103436 29 100.0 32 ............................. ACAGCTTGAACCGATTGAATTCGGACAGTTAT 103497 29 100.0 32 ............................. CAAAGAGAAAATGGAGCGCCTGCAATCAACGT 103558 29 100.0 32 ............................. CTGGTGGCCGCACTGTGTGCCGACGGGGAATT 103619 29 100.0 32 ............................. TACAGTAAAACGCTAAACTTTTTTATTGTCGC 103680 29 100.0 32 ............................. CGCCGCTGGTGCAGACGCCGCGCCAGCCGTCA 103741 29 100.0 32 ............................. CAACGATTTAGCCCCGACATTTGACACTATGC 103802 29 100.0 32 ............................. GTTTCGTTTTTATTGCAGCTAATAACGACAGC 103863 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 32 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : AAAAAAGCGCCCGCAT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-13.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //