Array 1 2806-33 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENIP010000002.1 Corynebacterium sp. CCM 8835 Contig_2_268.941, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2805 28 100.0 33 ............................ GTCACCGAGCGGATGCGCCGGATAGAGATATGG 2744 28 100.0 33 ............................ GATGTCGCCCGCCTCTCCGTCGCCGTCGGGTAC 2683 28 100.0 33 ............................ GTCTCGCACGTATCCGGCGAGGTCCGGTAGTGG 2622 28 100.0 33 ............................ TCAGGTGATCGCGCAGCAGTGTGCGGCCCCCAT 2561 28 100.0 33 ............................ CGGCGTCTGATGTGAAGCCCGGCATGCCCCTGT 2500 28 100.0 33 ............................ TAGCAGGTTTATGACGCCGACGATGATGATGAG 2439 28 100.0 33 ............................ CAGTTGATCACCGCCCGAGAAGTGGCGATGAGA 2378 28 100.0 33 ............................ TGACTGAGCAGATCAAGGTCGTGGTTGAGCCGG 2317 28 100.0 33 ............................ GGTGGGCTAGCCCCTGTTGGTTGCGTTTCCGCA 2256 28 100.0 33 ............................ GCTGACCCGAACGACCATCCGCGTAATCCAGAA 2195 28 100.0 33 ............................ CGAGGGCATCGTGAAAGCCTGGAACAAGGTAGC 2134 28 100.0 33 ............................ TCGGGTGGTTGTCTCCGGTACCGGGGTGTTTCC 2073 28 100.0 33 ............................ GTCGTTCAAGACACGCGCCGGGTTCAACGATGA 2012 28 100.0 33 ............................ TCTTGCCGAAAGACGCGACGGCGCCAAAAACAG 1951 28 100.0 33 ............................ GGGCGTCGCTGACACTGTGATCGCTCGTCTGCT 1890 28 100.0 33 ............................ GCGGGCCGGGTCGACACCGACGAGCTTCAGGTA 1829 28 100.0 33 ............................ CCTGCAGCTCACGCCGACGAATACGTCATATGA 1768 28 100.0 33 ............................ CGGCTCGACTTCGATATCGTCGATCACGCCCCG 1707 28 100.0 33 ............................ CAGAGGTCTGGGCGCGTCGATCGATGAGAGCGT 1646 28 100.0 33 ............................ CCCCGTGCTGGGGGCGCTCGCCGGCGCGCTGGC 1585 28 100.0 33 ............................ GGACGCCTCGCTTATGAAGCACCGTCGGTTATC 1524 28 100.0 33 ............................ GACAACCGGGTGGGAGGGCCTGCGGAAATGGGG 1463 28 100.0 33 ............................ CCCTGCCCAGCCTGCGCAAACCCGCTGGCCTCC 1402 28 100.0 33 ............................ TTGGAAAACCGCGCCTACCGCGCCGGTGGACTG 1341 28 100.0 33 ............................ CGCCCCGAACTCATCCCTCAACGTCAAGCGCTC 1280 28 100.0 33 ............................ TCGCCGCCGAGCTGCATACCGAACTTCGTGATC 1219 28 100.0 33 ............................ CATCCACCGCGCCCTGAGCACGAACACGCGAGA 1158 28 100.0 33 ............................ TTCGTAGCTGGAATTGTCCGGCGCCGGAATTGT 1097 28 100.0 33 ............................ TATCAAGGCGCAGCCATTCCTCGCCGACGTTGC 1036 28 100.0 33 ............................ GGTCCACCTTGACTACACCGGCAGGCCAGAGGT 975 28 100.0 33 ............................ CCTGCCGCGGAACCAGAAGCGGCGGCTGTAGAG 914 28 100.0 33 ............................ CGAGAAACTCCGATCGTCGCGCGTGATTCTCCT 853 28 100.0 33 ............................ GTGATCAACGTGCGGCGGAAGCCAATACCCTCT 792 28 100.0 33 ............................ CACCCTCGTCGCCGCCGGTTTGATCAGCGGCGC 731 28 100.0 33 ............................ CGGCGTGCAACCCATCTACAACCACAGCGGGAA 670 28 96.4 33 ......T..................... CTTCGGCGAGATCGGCGTCGTGCCGGCGAGCCA 609 28 100.0 33 ............................ CTCGGACCAGGCGAACAGCTTGTCCTTCAGGGA 548 28 100.0 33 ............................ GTAGGTGCCGTATTCGTTGATGATGTCCGGGAT 487 28 100.0 33 ............................ GGCGGCGAGGGAGGCTCCGCCGGTACCGATTCC 426 28 100.0 33 ............................ TCATAGATGGTAAATGTCAGCATCAAGGCAACC 365 28 100.0 33 ............................ ATCACGGCCGTACGTGGCGAGAAGTGCGGCCTC 304 28 100.0 33 ............................ TCACGCTGGATAACTACCGGCGCGAGAACGGAG 243 28 100.0 33 ............................ GAAAGCTGATTCCTCGTACGTCGACGGAAAAGT 182 28 100.0 33 ............................ CTCGGACCAAGCGAACAATTTATCTTTGAGGGA 121 28 100.0 33 ............................ CGCTCGGGAGTCGATGCGTTCGGCGGCGGCGTC 60 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 46 28 99.9 33 GTTTTCCCCGCGTATGCGGGGATGGTCC # Left flank : GTGCCCGCCGTCCCGACTTGTGTCCCGTTCGGGCTCATCCATCCTCCATCTGCAGCCGGCGATGTCGAGGAGCGCTCCTGATCTGGAAATACGGCTGATGAGCTGGCGATTTTACAATCATTCCGGCCGCTTGTAATATTTCTCTTCGTTGCCGAGGGAGTAAAAATCCCGGTAACGGTATGCGCCATTAGCTCAATTGGCAGAGCAGCTGACTCTTAATCAGCGGGTTCGGGGTTCGAGTCCCTGATGGCGCACCAATTTGCCCCGTCCGGAGTGATCCGGGCGGGGTTTTACTCGTGCGTGCCAGTCGGTTGACCGTGAGATCGGCATTTGCTGCACCCCGAGCTAGAGAATCTCGGTTGACTGAAACTGTGTGGCTCGGATGTGTGAGGCGAAGCCACAAAGAACCTCATTACACCTTGCAGGTACACGGTAGTGAGATCGACAGCAAACTGAAGCTATAATTGACTTGGGGTTCCCAAACCTCCAGTCTGGGAAGT # Right flank : CCGCGATCAGCTCCGACAACCTCGCCTGCGTGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCGTATGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGATGGTCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19-1265 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAENIP010000017.1 Corynebacterium sp. CCM 8835 Contig_17_193.993, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19 28 100.0 33 ............................ GAGACTATCGCGGCCCCACCGGACGGTGACGGC 80 28 100.0 33 ............................ CCCCCATCCACTAAAAGGACCACACCATGAGCA 141 28 100.0 33 ............................ GTCCGAGGAGGCGCTGGACAAGGCACGCCACGA 202 28 100.0 33 ............................ GGAACTCACACCATGCTTTCCATCCACGACGCA 263 28 100.0 33 ............................ GTTGGAGATTCAGGGCACGAAGGGGCAGTTGGC 324 28 100.0 33 ............................ CCAAACACCGGCGACAGCACTTCGTCCCACAGC 385 28 100.0 33 ............................ TCACCGCGAGCGCCGCCGACGGTCGTACAGGCG 446 28 100.0 33 ............................ CCGGCCGCGGGGCGCGTCCTCGGGGCGGTACAG 507 28 100.0 33 ............................ CGCCGCGAAGCTCGCCCAGGTGCTGCAGGTCCA 568 28 100.0 33 ............................ GGCCAGGCCCTCAGGGGTGCAGTGCTCCTCGGG 629 28 100.0 33 ............................ CAAGGTTCCAGGCCCCACCGTAACCACGCCGGG 690 28 100.0 33 ............................ GGTAGCCGGGTTCGTCGGCCTGCCGGAGATCGC 751 28 100.0 33 ............................ GCGGCAGAGGACGCGGAGCGCGCGGGCGCCACT 812 28 100.0 33 ............................ AGGTTTGCCGTCCACAAGGGTGTCCGAGATAAG 873 28 100.0 33 ............................ CCCCCAACTTCTCCAGAGGATTCACCAACGTCG 934 28 100.0 33 ............................ CCCCGTGTCACTGGCCGCGATGGCCGGTGTCTC 995 28 100.0 33 ............................ GCCCGGAAACTCGCGCAGCAGCAGCCCCTCGCC 1056 28 100.0 33 ............................ CAGGCGGGCGGAGACGCCGCTACAGACCATGAG 1117 27 89.3 33 .....-....T.C............... CCCCGAATCTGCTGGTTAAGGACTGCGTAGGTC 1177 28 92.9 33 ........G.....C............. CAGTGGCCTGGCGCGTTCGTGTAGGTCACCTCA T [1183] 1239 27 85.7 0 .....-......C......A......G. | ========== ====== ====== ====== ============================ ================================= ================== 21 28 98.5 33 GTTTTCCCCGCGTATGCGGGGATGGTCC # Left flank : TATACAGATGATGATGTGG # Right flank : CGAAAACCCCTCTGACAAATAAACTTGCGACCGTCGAGAATGAAAAAATGTGCTGGTTAAATCTGTAGATGTGATTCAGATTTGGGATGTAAGATCGTCGGTGGATCTGCTCTTCCTAGTGGTGTCTTGATCTCCTGCGGTGGGAAGCCCGAGACCATCCTCTGGGGGCTCTTGCATTATTCTTGGCTGTGGGGCGCAATATGAGATCAAGTCCATCGATGTCTGCCGTTGACCACTCATGGTTGTGCATCAATATGGAAAACCCCTGCTCTTTGGAATGATCTGGGTAGGTCATGATGGCCCTTCCGTTTCCGACTTCTTCAAGGACTATCTCCCAGATTTTCTCCCGCAGGCGTGAGTTAACCTTCCCCACGTAAACTCCCGTTGACACCTCGATGAGCCATCTCGTCAGGAATCCACGTAGAGAAGGTGGGCAGTTTGACAGGATTATCGTGATCATGGGCTAGGAATCCAGGCTGTAGTTCTTTCCGGCTTCCACT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCGTATGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCATGCGGGGATGGTCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //