Array 1 136419-135463 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWV010000003.1 Listeria booriae strain FSL L7-0459 NODE_3_length_443909_cov_57.916052, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 136418 30 100.0 36 .............................. ATTTTTAAATAAAATGGTTCTGGTAAAATAGCAACT 136352 30 100.0 35 .............................. TAGCTATTTTTCGAATAAAACGTAAGATGCTTTTT 136287 30 100.0 37 .............................. AGGGACGGACGGAGGCGAGGATGAAGGCAGCACATTT 136220 30 100.0 35 .............................. ACTTTTTTAGCCCCTAATTTACGAAGTTCATCAAT 136155 30 100.0 38 .............................. GAAATTACGGAACCCCTCGACATTATTCCACAGCCACA 136087 30 100.0 36 .............................. CTCTATTGATACAGTGCGATATGCGCTCGAAACAAT 136021 30 100.0 37 .............................. TAAGGAAGTTATGAACATGATGGATGATATCGATTTT 135954 30 100.0 38 .............................. ATTCATCTTCGTTTATAATCGAATATCTGTGGTCATCG 135886 30 100.0 36 .............................. TTCGATATTGACAGAAAGCTGACAAAACAAGAACTT 135820 30 100.0 34 .............................. TTAGATGGTTTCGCCACGGCAATCGAACAATTGT 135756 30 100.0 37 .............................. TTGGCTGTTTTTATCACTTCTATTTCAAGGCATTTTA 135689 30 100.0 35 .............................. TCCTGATTACCAAAGTCTAGTCCTACGATTACTTT 135624 30 100.0 36 .............................. TTGCTTTTACGAGCGTTGATTAATTTTGTATTCTTC 135558 30 96.7 37 .................A............ ATCCATTTCATGTAATCCTTTGCTTTATCTGCCGATT 135491 29 83.3 0 ..C..............A....-.C..G.. | ========== ====== ====== ====== ============================== ====================================== ================== 15 30 98.7 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AGGCAAATGGGCTGGTATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGCTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCCAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTCGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGAAAAAGAGGCGATGAAAATTCTAAAAATCTGTCGACCGTCGGTAGTGTGGAAATGAGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGATTTGAGGCTGTTTTTGGAGATTGGGTTGTAAGGTTTGGGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGGTGAGGTACCT # Right flank : TAGATTGCTCACAAATGCAGTGTTTTTATCCATTTTTTACAGAATAAATTATCATTTAACAGCCTCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAGCAAACTGTATAGAAGGAGGAGTTTTTGCGATGACGAAAATTGGATTTATTGGTGTTGGGGTTATGGGCGCTAGTATGGTGCGGAATTTGATGGCCGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGATTTGGCGCCTCAGGTCGATGCGCTTATCACGATGGTTGGATATCCGACTGATGTGGAGGAGCTTTACTTGGCAGAGGACGGGTTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACGACTTCTTCTCCGAATCTTGCGAAACAAATCGCCGAAGAGGGCAAGGCGCTGAACATTGCGGTGCTGG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 162482-164147 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWV010000007.1 Listeria booriae strain FSL L7-0459 NODE_7_length_211837_cov_67.662977, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 162482 30 100.0 36 .............................. TTATCTACGCCGTCTTTGTCGGTCATTTTTGATAAT 162548 30 100.0 37 .............................. AGGCACAAAAATAAGACATATCATTTTGACACGTCTC 162615 30 100.0 36 .............................. AAGATAGCATAAGTAATAGCATCAATCATACTTGTC 162681 30 100.0 35 .............................. ATATCATCTGTACAATCATAAACAGTTTGACCATC 162746 30 100.0 36 .............................. GCCGTAAAACGCGATTTTGGCATAAAAACAGGGTCC 162812 30 100.0 36 .............................. ACGCTAATTTGAAAGAAAAAGGAAGTTGCACGAAAA 162878 30 100.0 34 .............................. CACTTATACGATACTTCGGCAAGAGCGCTACCTC 162942 30 100.0 37 .............................. ATGAAAAAAGATTTTGGAATTTAAAAAAGGGTGTCGC 163009 30 100.0 36 .............................. AGGATTAAGCTTGTGTACTTCTATCAACTGACTTTC 163075 30 100.0 36 .............................. TCATAAATCCACCCGCAATATTTAGAATTGAATTTA 163141 30 100.0 36 .............................. ACGCTTACTGGACATTAAACACGCCGAGCAGGCACT 163207 30 100.0 36 .............................. ATTGTGGGCATTACAAGTATTCTACGAGCCCAATTT 163273 30 100.0 35 .............................. TTTGTTTTATCCCCTTTTATTGTGCAAACAATGAC 163338 30 100.0 34 .............................. ATGGCTGGGACTGATGGCGCTAAAAAGGTGTTTT 163402 30 100.0 36 .............................. AGTAATCGGCTTCAAGCAGCAGCTGGATGTAATACA 163468 30 100.0 35 .............................. TGTTTCGCATGAATGCGACTTCGCCCGTCAGCTTG 163533 30 100.0 36 .............................. ACGAAAGGGGCTGTAATGAGCGGTAAGGACGTATCA 163599 30 100.0 35 .............................. TCGCTCCCTTTAGTAAAAGTAAGGTTTGCATTGGA 163664 30 100.0 36 .............................. CTGCCACTTTTCTCGAGCTCAAAAGCAAGTCGATTA 163730 30 100.0 36 .............................. TATTTCGGTGTAGATATTGATGATATAGCAGACGAA 163796 30 100.0 36 .............................. TTTGATGGTTACATTGCGGAACTTCATAAGGGCGAG 163862 30 96.7 36 .............T................ GCGCTAAGAGAACAGCCAATAAAATGGGTTTGAGAG 163928 30 96.7 35 .............T................ TAATCAAATGCTTCACTTTTTAGCAAAAGTGCTCA 163993 29 83.3 30 .C...........T.....-A........A GTTACATCACGCGATCAAAAGCAGAACATG T [164018] 164053 30 90.0 35 ............AT.............G.. TCATATTTTGATAGTTCAACACAATCTTGCTTTCG 164118 30 83.3 0 .............T.........CA...TC | ========== ====== ====== ====== ============================== ===================================== ================== 26 30 98.1 35 GTTTTTATCTAAGCAATGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGATGCGGATATCGTATTAATTGCCGTCGGATTTGCAGGCACAACCAAGTCAGTATTCGAAGACTTTCAAGTAGCAAAAACAAATCGCCATACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCCGCCCGCGAAGTAGATTTCTATTTAATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTCGGGGACATCGACAGATTTTGTTTTTGCATAGGGAGAGAAGGGGGGAGGATGGTTTTCGAGAGGTATAAAAAAATAAACAGGTGCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTGAGAGGGTACCT # Right flank : CCCCAAATAAGGAGAGATACCAAATGACTATGGAAAAATTAATACTCCAAGTCACCATAGACAGACCTATCGGATTTAAAGACGGCTACGGAAATACATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTCGACATATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAATGAATTATTATCTAAACAAGAGATATCTGAAAAAACGCATTTTCTAGAGCAATACTTTGATTCCGTTATCGAACTCCTTTAACAAATACAACGGTATAAACGCTCACCTTCTCACAAAATACCGAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATATCCAGCCCATAAAAAAGGATACAAATACTAAAACTACGAGAAC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGCAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:76.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 290115-287447 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWV010000001.1 Listeria booriae strain FSL L7-0459 NODE_1_length_1041693_cov_63.149493, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 290114 30 100.0 36 .............................. CTTCAACAACTCTAACCACTGTAACTAATTCCTCAA 290048 30 100.0 38 .............................. AAAAGAAATTAGAATTAGAGAATGACAAGATTGAGTTT 289980 30 100.0 36 .............................. TAACAAGTTTAGAAATAGCCTGAATCACACCTATAA 289914 30 100.0 34 .............................. AAATTTATCACTCCCTAATTAGTTCTTGCCAAAA 289850 30 100.0 38 .............................. AGGTTTTCTCCAAAGTGTCATAGCTTACTCCCTTCGTT 289782 30 100.0 36 .............................. ATTTGAGACTGTTCTTCTTTCCAGACAGATATGATC 289716 30 100.0 37 .............................. CAAGTTAGAAAATCGCGACGATAAAAAGTAGACGACA 289649 30 100.0 37 .............................. GCACCTATTGCATCTACATGGTGTATTTCGCCTTGTC 289582 30 100.0 36 .............................. AGCCTTAGCGTTGATTGGCGTGCCAAAGGTGCTATC 289516 30 100.0 34 .............................. TTTGGAATTGATGCGATGAGTTGGGGTCTTCTTA 289452 30 100.0 35 .............................. AGATCAACCATAAACTCACCATCTTTTTTAGCACC 289387 30 100.0 36 .............................. TTGAAAACGCTCGATGAGGTACAAGCATCTGATTTG 289321 30 100.0 36 .............................. GTAATAGATATTTATGCACAGTTAGAAATGACGCTA 289255 30 100.0 37 .............................. TACCAATCAGCGCTTGAAATGATTATAGCGGCATTTC 289188 30 100.0 36 .............................. CATTTACATGCTTGCCGTGTAGTGTGAATGTCTCTC 289122 30 100.0 37 .............................. CCGAGATCGAGCGCACGTATATCAACAAGAAAATTCC 289055 30 100.0 36 .............................. TATATCATGGAGAGGTGTAACATTCGTGAAAGGAGC 288989 30 100.0 35 .............................. ATTCCCATTCGGGCGAAATCCCTCGTTACGATTTG 288924 30 100.0 37 .............................. ATTTTTCAGATAGAACGCGACATCAAATTCACCTTGA 288857 30 100.0 36 .............................. ATAGATGGGGACGGGAGTGTGGAAGCAATGAAAGGT 288791 30 100.0 36 .............................. TTTTGAAGATTTTGTTGTTTTAATTGATGAGGATAG 288725 30 100.0 34 .............................. GTATTTGAACGCATAGCATCCATTTTCACGTAGA 288661 30 100.0 35 .............................. TCTGGAGTAACAGCTTTTACACCACTTGGTAAGTT 288596 30 100.0 36 .............................. AATTGGTAATAGTGACAGCATTCTCGCGACACGGGA 288530 30 100.0 34 .............................. TTGGAAGCTACAAAAACAAGAGCAACAATAATAG 288466 30 100.0 37 .............................. ATTATACGAGGAATATAAGAATCGGTACGCTTGGTAG 288399 30 100.0 36 .............................. CTTCGAAAACTACAAAAACGGAAGTAATCGGGATGT 288333 30 100.0 37 .............................. TCGTAAATGTTTCAGAAGCGTAATTATTTAACGCATC 288266 30 100.0 36 .............................. CTACAACGCTTGCTAGTTCAGTCAGTCGTGACGCAT 288200 30 100.0 35 .............................. AGCTATTTTGCTATTCGGCTTATACGTCTTAATCT 288135 30 100.0 37 .............................. CGCTGTAAAAAGTTTTGAGCTTCTATTTTTGCATCGG 288068 30 100.0 37 .............................. CGGTACCCATAGCGGGAACCACCACGTTCGCCGGATG 288001 30 100.0 36 .............................. CAATACCAATGGGCTATCGACCAATTAGGAGTCACT 287935 30 100.0 36 .............................. TTATCTAACACTTGATAGCAAACTGATTAGTCAAAA 287869 30 100.0 36 .............................. GCGATTTCGAATCGATAGTGTACACGGTGTGCCCTA 287803 30 100.0 36 .............................. CATACACTCGTTAAATCCTCGTTCTATGTCATCTTG 287737 30 100.0 37 .............................. ATCCTCACATATGCCTCGTTAAAGTTAACGCCAGCTC 287670 30 100.0 36 .............................. TGGCAACATTTTATTATAGGATCATTGTTCGGTTGG 287604 30 96.7 34 ..........................T... AAAATTGCGGCAACATCTTCCGCTTTCCTTTTAC 287540 30 96.7 34 .................G............ ATCTTTCCTTAGTTAGGATCGATGCTGCCGTTCG 287476 30 86.7 0 .........C.....C.......CA..... | ========== ====== ====== ====== ============================== ====================================== ================== 41 30 99.5 36 GTTTTTATCTAAGTAATATGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATTTTGATTTACGACATAGCAATGGATAACGGCGGCCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCATGTGCAAAAATCGGTATTCGAAGGCGAAATAACACCAGCATTACTTGCCAAATTGCGAATGGAGTTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAATTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTAGATAGAAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGGTTTAAGGCTGTTTTTGATGTTCGGCTTGTAAGGTTAGAGAGCGGAAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : CAATCTGTTTAGCTACGATTGCTTTGGCAGACAATCTCTGTCTACCAAGCAATGTTCGTAGCCAGTATACGCTACTTTCCAGCTCTCATAAAAAATCCTCACGATAATCTTTAACATATTGATCAAACGAAGTAGCCTCACGGTGCAGCAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTAATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTTTTGGGGTTCCGCGTTTTATTATTGTTGCGCGAAATCGTAATAGGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCTGCCACCTCATAATACGTCAATGCTTCTGTTCCGGTAATACTATACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCTATCTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTGAATA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 424560-424793 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWV010000001.1 Listeria booriae strain FSL L7-0459 NODE_1_length_1041693_cov_63.149493, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 424560 36 100.0 30 .................................... GTGTTTCAAATGTTAGCGATATTGGAGGAC 424626 36 97.2 30 ........................A........... ACAACCCATCACATTACAACACAGGCGGCA 424692 36 100.0 30 .................................... GTGAATTAGATCAAGCAATCGCCAAAGCCT 424758 36 86.1 0 ..........................GT.T...TA. | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 95.8 30 GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Left flank : ACTGTACAGATATCCCCATATCGAATATCTTCGAAAAATCATCAACACTTGGCAGTTTCTTTGTACTAATAATTTCTTTGCCTTGAAGTGTGATAGGTAACGCTTTGCTACCATCTTTCTTCAATAAACGCATAACCTCATCATTTTTGAGAAACGGTTCTAGCGAGTCTTCCAAGTAAAAAGCATCAAGAACTATTTGCTCCTCCTTTACGAAGAGATAACTTTCTTGGAACTCCTTGTCAAAAATAGAATTGAATAGCTCTAGCTCTACTTCATCAGACTGTTTTAGGCTGCCTCGTGAGTCGAGGAAGAAAGTAAGTTTTATCATTTTTGCACTCCTAACTGCTTTCGAAACTAAAATAGGATACATCATTGTTTTGCAAGTAAATACTGCTTCATTGACTACCGATTGGATGAGCATCACTTTGAATGCTCTATTTTCTATGACTACTAACCTCCGATTAAATAGAAATAACTTATCCCACTTATCCACAGTAGAG # Right flank : CTTTAATCTTTGTAATTCTTTTATTAATAATTGAAATACCCTACGTCACATCTCCAATAGCGCCTTCACAATACTACAATACTCTTCTGAAACTTGATTCGTTTCAATATAACTGTCATTTAATTTTTTCCCACTTAAATGTCTCAATTTTTTTGGTTTTAGGCTTGCTATTACCAATCTGTGTTTATTGTTTTTCAAGTTAGCAAACACAACACACATACCATGCTTATCTAAAAGATCGATTAATGATTTAGTAACTGCGTTCTTTAATTTGCGATCATATTTAAGCATTTCTCTTAATTTCTCGAATAAATACAATAACGAATATTTATTTTTTGGTGATAAATAATTTAAATGCGCTATACGATTTCTGTCTTTTCTCTTAGAAACAAACAAGTTCTCCCCTACCATGAATTTATGAAGTTTTTCAATATGTTTTGGCCATTTTTTCCTACCTCTTTCTTTCCAATATTTTTCAGTAGTATTAATCCAGCTATCCA # Questionable array : NO Score: 2.65 # Score Detail : 1:0, 2:0, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 3 428268-428568 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWV010000001.1 Listeria booriae strain FSL L7-0459 NODE_1_length_1041693_cov_63.149493, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 428268 36 100.0 30 .................................... GAAGGTAAAAGGTAGAGGTTATGCAGATGT 428334 36 100.0 30 .................................... GCTAGGAGGCGGAGAAAATGAAAAAATCAA 428400 36 100.0 30 .................................... CTGCTATTCCAACAGGTGATTATCGCTTTG 428466 36 97.2 30 ..............C..................... ATTAGGTAATTTTATAAAACACACGATGGG 428532 36 80.6 0 A...............A.........TG.A..C..A | A [428560] ========== ====== ====== ====== ==================================== ============================== ================== 5 36 95.6 30 GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Left flank : GTAATACCGCTGACATTAATTCTGTTATTTCTTTATTGATTGCTTTGTTGATTGCTATTTTACGTTTATCTTTTTCTTTTTTGTTGGGTTTCCTCACTGTTTTGTTGAGAATACTCTTATAAAACGACTCTTTCTTTTTATCAAATATAATTTCTTCTGTCTTGTTCTCATCAATACCTTCATAGACCAACTGGCCTTCTTTACTTGTCCTCTCCATTACGATAGTTCTTCCATCAACTCTCATTTTGGTTATTTTCATTTGTCTGCTCAGCTCCATTTAGTTTTATAGTTGTATAGCTAAATGTTTCCACTTTCATATGTGTCTGATATTGCTAATATTTATCAATATATTCATTATACAAGAAGGTATTGCGCAAAACAACATCCATTGGCAATTATCCACTTTGCTAATAATTGAATAAAGCCATAAAAACTACTGATCCAATTCTTTGAATCACAGTTTTTATGGCTTTATTGTCGAATACTTATCCACAGAAGAG # Right flank : ATCTATTTTACTTTCAACAGTTTAACTATACCAGATTATTAGTAACTCTGCATCTTCGCGTAATCACGCGTACTAAATAATAATTTCCCGTACTAAATCAACAAAAAACACCATAAACCGCATCTTACACAGCGATCTACAGTGTTTCCTGTTCTTTCTAAGCGGAGAAACGGGGATTCGAACCCCGGCGCGGCCGGAACCGCCTAACAGATTTCGAGTCTGTCCCCTTCAGCCGGACTTGGGTATTTCCCCAAAATGCAATGTTGTTGTGGCAGGCCTAAATGGCTTGACTTGAACAATTACAAGTTCCATTCTAATGCATTTTTTTCGAAAAATCCAGTTTTTTATTTAATACGCGTCATAAAAATCGCTGCGCATGTGGGGAATTACTTTTTCCCAAGCTTCTATGGTTATTTCACTGGCTTGGGCTTTTTCATAGTAAACGAGGTCTCGTGGTCGCACAAAGCCCATCATCATTTGTCCTAGGCCTTGAATCGTAA # Questionable array : NO Score: 2.84 # Score Detail : 1:0, 2:0, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTTTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.40,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //