Array 1 550855-548793 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGEV01000024.1 Bacteroides fragilis str. S38L3 gbfS38L3.contig.23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ===================================== ================== 550854 35 100.0 34 ................................... ATGACACAATTAATATGCGTACCCAGGCATATTT 550785 35 100.0 35 ................................... AATGTTAACGCAGAGGAAACTCTGAAACTTAATAT 550715 35 100.0 37 ................................... AAAATTGAAACCGGTTGACCCGACAATTCCGGGATAC 550643 35 100.0 34 ................................... ATCGGTCAGCCTGGAGATGAACTGGTCGACTTTG 550574 35 100.0 37 ................................... ACTATTTTGACAGACGAATTTGCCAGTCAATTTAAAA 550502 35 100.0 35 ................................... TTCAAAGATGGTGATACCGTCAACATTGACGATAT 550432 35 100.0 35 ................................... AGGCATTAAAAGACATTTTACACGGCGCTTTTATC 550362 35 100.0 35 ................................... CTACATTTGAAGAAGTGAACAGCTCTAACACCTTT 550292 35 100.0 36 ................................... ATGAAAAAAATTCGAGCTAAGAAGAGAATAAAAGCT 550221 35 100.0 35 ................................... TCTGTTAAAGATTGTTCTTCTAATAAGGTGGTTAA 550151 35 100.0 34 ................................... GTAAAATCAGTACAGCTAAAAATTGAGCTAAAAC 550082 35 100.0 33 ................................... AATATTTGGAATGGTACAATGGATTTGCTTAGC 550014 35 100.0 37 ................................... TTCTTAAAGGCAGAAAAAGAAGCTTAAGCTGGTACTC 549942 35 100.0 34 ................................... TTTATTTTGGTGGCAGCTATTTATGCGATTTTGT 549873 35 100.0 35 ................................... TTTTATTTTAATTTTTCTTAGATTGTAATTATCAC 549803 35 100.0 35 ................................... AACGGTTTAGTAGGAATGATTATCGGCGGTTGCTT 549733 35 100.0 34 ................................... TCTGAAGGGATGTGTAAGAAAACTAAGGAAACGC 549664 35 100.0 36 ................................... ATTTACCTGTTTGCCCCGCATTATGGACTGGCAAGA 549593 35 100.0 35 ................................... TAAGTTTATGCTACAAGTTCAATCTTAACAAAGCC 549523 35 100.0 35 ................................... AAAATTTCAGCAAAATTGAAGGCATTATGACAATT 549453 35 100.0 34 ................................... GAAGATAGCGTTATTTCCTCAGGGAAGCTGTCTT 549384 35 100.0 36 ................................... AAAAATAAATGCGCAGGAAAATATCCGCGCCGGTGT 549313 35 100.0 34 ................................... ATTTCTTCCCCAAAGGAAGCCCAATTAGGTTGGT 549244 35 100.0 33 ................................... AGTTTATTGCCAAAGGCGGTTTCATCAATGTTT 549176 35 100.0 36 ................................... ATCAAGTTAGATGACGGGGTTGCGTTCAAAGTCTAT 549105 35 100.0 34 ................................... GACTGCCGCCTTCAATCAGTGGAGTTTTTCTTCA 549036 35 100.0 36 ................................... TTTCAATAAACTACATGGTCGAAGAATGTGATGATT 548965 35 100.0 33 ................................... TTATGAAAATGCTCAAGGCACTGTTTCTACGGC 548897 35 100.0 35 ................................... TATGCAAGTGGTTCTGATTATAGAAAATACGAAAA 548827 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ===================================== ================== 30 35 100.0 35 GTCTTAATCCTTATTATACTGGAATACATCTACAT # Left flank : TAATATCCAAAGCATCTACAATGTAACTTACAACACGAACAAGATGGTTGGGAGATATTTTTTCCGATAAACGAACCGGAAAAGAACATTTTGGCTGGAGGTTAACTCTCTAAATACTATCTTAACTATTACTGTTAATTTTTCACAACGGTAATATGAGGCTTTTCACCGAAATAAACAATGGTAAAAGGGGCTATCCGACTTTTGGGGGGCACTTTGCTTTTTGGACAGCCCCGTAGTATTATCGCCTTTGTGTATTTTTGGTAAGCTATTCCACAGCTTATTAAAATAGTTACCAATAAATTAGTTCTGCCTCTCTTCTTCTTTTCCTGCTTATTGATCATTTTCCCAATGTTAAAAGCAATACCGAAGTCCATGACGATCTTATCCAAGCCGTTATGTCTGAACTTCTCCCCTTATTCTATTTAATGTAGTTAAATTTTTATATTGGAATACATCTACATGCTAATAAGGAAAGTTTGCAGTATTTCTGGGCATTG # Right flank : ATATTGATAATCAGATTATTATAAAATATGTATTCTATCTGTATAAATATATAATAACTTATTATTCAGTTAGATAGATGAAGTGTTGAACTGATTTTCGCAAATGTACTCTTTTTTTCTGTAATTTAAATAAATAATTTGTAGAATATAGAGATATTTAATTGATTATCACTTTGATATGATCGATTCATTATTCGCAAATGCCTGCTTCATTTGTTATATTATAGCCTATTTCGAAAATAAGATTAATCTTATATTTATAATTATCAGATAATAAGTGTATTATGTCAAAGAACGAATTGCTTATTTGTTTTTTTTCGCAAATGATTTACTAATATACAAAAAAGCTAGTTCTTTCGTAGCTTTTATACATTATATATTATTTTTCATTTAAAAGAATAAGCAGAAAATCAATGAATTAAACAAATTCTGATTTTCGCAAGAGGTTTAGACTATTTCGACGGTTTTAATTATCTTTTTTCGTATAGGTTGATATATAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATCCTTATTATACTGGAATACATCTACAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:71.43%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [86.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 2 689548-689004 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGEV01000024.1 Bacteroides fragilis str. S38L3 gbfS38L3.contig.23, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 689547 29 100.0 34 ............................. GAACGAAAAGGCGGGCTGGATTTCAGCGGACTTC 689484 29 100.0 36 ............................. GGAAATGGCGGAAGGATTGGCCGTCAGGGTAACTGA 689419 29 100.0 37 ............................. TTAATCATCACATTGATCTTCTTAATCGCTTCATCAG 689353 29 100.0 34 ............................. CCGAGTACTTGTACATCGTACAGTTTCCCTTGCT 689290 29 100.0 34 ............................. ATACACGCCGGTCTTCGGTTCGATGGCGAATACG 689227 29 100.0 36 ............................. TAAATAGCTCGGCAAGTTTTACGATCTGTGTAATTG 689162 29 100.0 34 ............................. TACTCTAACTGATTATCAGCTGTAAGTCCGGTTA 689099 29 100.0 37 ............................. TTGTGCAAAATGCAAGATATTACGATGTGCTGCACTG 689033 29 93.1 0 .........................G.C. | A [689009] ========== ====== ====== ====== ============================= ===================================== ================== 9 29 99.2 35 GTATTAATTGTACCTTATGGAATTGAAAT # Left flank : ACCGTTTAAAATGTACTGGTAGATATGTATGTTATTTTTGTTTATGATTTTGGAGAAAAGAGGGTCTCAAAGATGTTGAGATTATGTCGTAGGTATTTGAATTGGATTCAGAATTCTGTATTTGAAGGTGAACTTTCGGAAGTACGTTTAAAAGAGCTATTATTATTAGCAAAAGGGGTTATGAACCCCGAAGAAGATTGCATTATTATTTTTAAAGGGGCTACTCAATGCTCTTTGGAAAAGGAAATAGTGGGCAAAGAACTTGCTAACATTGATAATTTTTTGTAAGACGGTTGTCGAAGTAATTTGTTATTGTGAATTATCAATGGTAAAGTAACGGAAACGCTCTATGACATGTTGATATATAGATGTTTAGTACCTATGTCGCTAACCTATGTTTTTTATATTATTCTTGATCGACACATTATTTCTAAAGAAAAGCAATTTTCTGCAAAAGCATTTGGCTTATTACTAAGTAATTGCGTTGATTGATGGGTAGA # Right flank : AAGGAAGATCTATATTTAAAGGTTGGCTTAAAACTCTATCGGATGAAATTTTTTCTTCCTTGCTAGCAACATCCCCCATTATCCTTTGGGAAATGTTTTTATTTATCCTATTTCCTTTTTATTAGAAAACAATCCTTATATTTGTCCGTGTATTATTAATTTAATGACAAATGACACTTATGAAGACATTGAATTTTATGAAAACGCTATTCTTATTGGTAGCTATAGTAGGCCTAAGCTCTTGTGGTGACAAGTATTATTCAGATGATTATCTACGAAATAGCAATGCAAAGCTCTGTGGCAAAACCTGGGTGAATGATTCGGAGAAGAATGATGTAGACGAGTGGGTTCGGCATACATTGAAGTTTGATGATAACGGCCGGCTGGCAGAGACTTATGCCTATTATCATGTAAATGAAAGTCAGCCTTACCGCACGGAGACCAATAATCTGACCTGGTCGTGGATAGACGATACGATGGAAGGTATTGTTTTTGACTAT # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTGTACCTTATGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 1266-2763 **** Predicted by CRISPRDetect 2.4 *** >NZ_JGEV01000038.1 Bacteroides fragilis str. S38L3 gbfS38L3.contig.37, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 1266 47 95.7 29 ...A......A.................................... ATCTTCGCCGTTCCAAAAGTCGCAGTTAT 1342 47 100.0 30 ............................................... TTCCGGTTAAAGTTGACCTGCTATTGTCTC 1419 47 100.0 29 ............................................... TAAGTATCTGCCATAGTTTTACCAATCTG 1495 47 100.0 30 ............................................... CTAAGACATTTCTTCCGAGCGTAGCGAGGC 1572 47 100.0 30 ............................................... ACAGGACGAATTGCGTATCAAGCAGTCAAC 1649 47 100.0 29 ............................................... CCCATGCGCTGCAAGGTAAGTAAGGAAAT 1725 47 100.0 30 ............................................... AGCCAGGGCTTCCTGATCTGCCAGCGGTAC 1802 47 100.0 29 ............................................... TAAAACATTATCCACATAGTCCTGAAGCT 1878 47 100.0 29 ............................................... TATGCCAACTGGAATAAAGATCTTTGGAT 1954 47 100.0 30 ............................................... TGCAGAGCCTTTGCCATGCGTGCCACTCTG 2031 47 100.0 29 ............................................... GATAAGATTTTCCATATAAGGCCTGTTAA 2107 47 100.0 29 ............................................... AAGAAGAAGAAATTACCAATTTTGAAGCT 2183 47 100.0 30 ............................................... TACTCAGCTGGCGTACCGCCGCTTCGGAGG 2260 47 100.0 29 ............................................... GCGATACGGTTATCACCAATGACGATTTA 2336 47 100.0 29 ............................................... AGGGTCAGCGGCCCAGCGATCCATCTTGC 2412 47 100.0 29 ............................................... TGAGATGTCTATAGAACCATCAAAACCGC 2488 47 100.0 30 ............................................... CAAAAACCTTAGATGTGACTAAGAAAGTGA 2565 47 100.0 29 ............................................... GGGAGTTACGCAAGGGCAAAGCTACCGTA 2641 47 100.0 29 ............................................... AAGTTCCAACTTGTCACCATTCATCTTAA 2717 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 20 47 99.8 29 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Left flank : TTCAGGGGCGGAAAGAACAAAGCTTTGGCTTCGAAAAGACTTGTTATTTGGAAACAAAAGGCTTGATTTAACAGAGGGTTAAATCAAGTTATAGGAAGAGGAAAAACAAAAGGAGAGAAAGTATTGAGAATGAAGAAAATAGAGAAAAAGGGAGTATTTTCTGGGAAAAGGGATAAGTGCTGGTCCGAAAGGGATAGTTGTGATTAAAGCAAGTATGGGGGCAGGGAATTTTAAAAAGCAAGGTTGGGAATGGAAGCGGGAGGAGCTTACTGTTAAAGACCAAAGGACAAATTACAAAATATTATCCAATTAACAAACCGATAAACAATCTATTAAATGGTTATTCACAATTCGAAACAGCTTCTAATGGTAACTATATTTAAACCGTCTAATCAGATACACTTAGTAGCATACTTTTCAATTACTAAGTAGAGTACTTTTTAATTATTATCTACACCATCATAAACAGCATATACTATCTGATGAAGACAAAGCGATGC # Right flank : CTCACTCCGCATAACATAATGTTCTTCAACAAGTTAAGAATAAATTAGAAAAAAGAAAAAGAAGACTGTTTCCAACACAAAATCTCGCATTAATGCGAGATTTTGTATTCTAGAACAACTCCAATTGCTGTCCCGGCGTATTGACATCTTGCACTTTCTTTCCATAAAAAAGCTCTATATCTCCAAATTGTTTATCTGTAATACACATGATTCCGACATGCCCAAATTCTGGGAGAAATGATTTAACTCTTTTTATATGTACTGCTGCATTCTCACTACTGCCACAATGACGCACATAAATGGAAAACTGAAACATCGTAAAACCATCCTTTTGTAGATTCTTTCTGAAATCGGCATAAGCCTTTTTTTCTTTCTTAGTCTCAGTTGGCAAATCAAAAAGAACAAGCACCCACATAATACGATATTCATTAAAACGATCCATAATCTATCGTTCGGGATAGGAAATTCTCCGAAGCTCTCCATTGAAACATTTATAAAGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.20,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //