Array 1 871831-871023 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033622.1 Dickeya zeae strain CE1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 871830 28 100.0 32 ............................ GACGCTGGGTGACCATCGAAGCTGGGCATTAC 871770 28 100.0 32 ............................ ACGCCGCAATCGCCGGTACCACAGTTTGCATC 871710 28 100.0 32 ............................ ATCTCAGACTTCATGACATTTGAAATTGAAGC 871650 28 100.0 32 ............................ GTCAGTTTCAGCAGCTCGGCGGCGCGCCGGTC 871590 28 100.0 32 ............................ GATGATGCGCGAGACATCCAAATCAGCGAGCA 871530 28 100.0 32 ............................ ACACCAGAGCAGCCAGATGGTGATCACATTGC 871470 28 100.0 32 ............................ ACCGGCGCACCGGCAGCGGCTGAAGAACCCGG 871410 28 100.0 32 ............................ TTACTCGTTCGTAAATTGACTTCGCCATGTAA 871350 28 100.0 32 ............................ TGGCGGGGCATTTCCGACCGGTATCACGCGTG 871290 28 100.0 32 ............................ GGGACCGGCCATACCGCCTGTTCATTTCCCAG 871230 28 96.4 32 ...........G................ ATTGGGTAGCAACCTGCCAACCAATCCATGCC 871170 28 100.0 32 ............................ CACATCGACAATCCCCAGCTCCTGTTTGTGTT 871110 28 100.0 32 ............................ GATATGAGCGAGGACGAGCTGCGTGATCGAAT 871050 28 67.9 0 ...........GA........GGTTGGT | ========== ====== ====== ====== ============================ ================================ ================== 14 28 97.5 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : GTGACCGAAGTACCGGTGCCAAGCATCACCACGCTGGTATTAGCAATCGGGATATTCCAGTACAACGACTGATTCCCCTCTTCGGTGACATATTCCACCCGCCCGCCATTCACCAAAATACGGCAATGCTGGAGGTAATAAATATTGGCGCGTTTGGAATGCAGAATGGTTTTTAAATCCGACGGGCTGAATACGTTATCCATAAAACCGTTTCTCTGTTGTCGTGATAAAGCAAACCCACCCGCGTAATAACACGCAGGCTAATAATTAATTGAAAAACACGTAATACACTGGAAATTAACGAGAATCAGCCTAGCACAACCCAAACCAGAAAATGAATGACGCCAGAAACACTTTTCCCGCTTTAATACCCTTTTTTTCAGACGTCTTTTTCGATATTGAAAAATCAATAAGTTACCGACAGCCGAAAAAAAAGGGTCTGACAGCGAAAATCGACAATTGCAGGCTGAAATACAACGGGTTAGAGTCAACGGGCTACA # Right flank : GGGGTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTCTGACAAAAACGCCGGGAGCGTTTTTGAACAGCGTTTACGCTGGCCCGAAGGGCGAGCCCCAGGGATGGGGCGAGTAAACGCGTAATGGGCGATCCGAATAGCGAAGGCGAACGCCGAAGGCACCGCGCAGCGGCGTAGTTTAGCCACCCAGCCAGAGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACTCGGTTTATCCCGCACGAAACCCTTCACGCTTTCAGGTACGCCTTCGGTGTCGGCGTGATGCGGTTAATCACGCACGAAACCCTCTACCACACCACCCTATACACTACGCCCTTAATCCAACAAGCGCTTTCCCCGCTTCAGGGATATTTTGTCAAAACGACGCCCAATCACTATTGCTGCTACCCGCCGCCGC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 880815-881622 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033622.1 Dickeya zeae strain CE1 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 880815 28 100.0 32 ............................ TTTTGCGCTATCTGCGCATTGGTCCAGCCCTG 880875 28 100.0 32 ............................ ATTCCAGTAACGCCAACTGCAGCACCTAGCTT 880935 28 100.0 32 ............................ AGCGACGTGAACCGCTGAGCGCCAGTCGTGGA 880995 28 100.0 32 ............................ ACTATGGTTAAAGATGCCCGTATTTCTCTGAT 881055 28 100.0 32 ............................ TAATCCCTGGAGTAGCAATGAGAAACCCAACA 881115 28 100.0 32 ............................ CAGCAGAAGACCAATAACCCGGCGGTGTTCCT 881175 28 100.0 32 ............................ AGTTGGCGGCCCATGCGCGCACCGCATTGCGG 881235 28 100.0 32 ............................ AATGGGTGGCGGTGCCGGTGCAGCGTTATTGC 881295 28 100.0 32 ............................ TCGCCCACAGCATCGACACAGGCGAGCGCTAC 881355 28 100.0 32 ............................ TATAACAAAGAAGAGTATCATCAGAAATTCAG 881415 28 89.3 32 ...........CAC.............. AGCGACGGCACCGCCCACCACGACCCCAGCGG 881475 28 92.9 32 ...........CA............... ATTGCCTGACGTGAATACGCATCTGCGGAAAG 881535 28 85.7 31 ....G......CAC.............. CAAAGGCGATCCTCACAGACTGATGGATCTT 881594 27 78.6 0 ...........CAC.........-..CG | GG [881615] ========== ====== ====== ====== ============================ ================================ ================== 14 28 96.2 32 GTTCACTGCCGAGTAGGCAGCTTAGAAA # Left flank : AGGCGCTGACGGCGCTGGAGCAAACCGGCTGGCGCACAGGGCTGCGCGACTATAGCACCATCACCGATGCACTGCCGGTGCCAGCGGGTGCGCAGTACCGCACCGTGCGCCGGGTGCAGGTGAAAAGCAGCGCTGAGCGCCTGCGCCGCCGGGCGGTGAGCAAAGGTTGGCTGACCGCGGATGAAGCCGCTGCCCGCATTCCCTATGCGGTGGAAAAACGCACCTCGCTGCCGTATCTACCGCTGCGTAGCCTTTCCAGCGGACAAACGTTTTTACTGTTTGTCGAGCACGGCCCGCTACAGGACAAACCGGTCGCCGGTACCTTCTCCAGCTACGGCTTAAGTGCGACCGCCACCATCCCGTGGTTTTGACCCTTTTTTTGCGGCCAGTTCTAACGTATTGATTTTTAATACCGCAATCTGGCCGCCAGAAAAAAAGGTTTTTCCGGAAAAACGGCGGTTTTTCTTTAACAATCAGTCGATAAGCGATTATTCGCTACA # Right flank : GGGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGAGCGGCAGGACGCCGCGAAAGCCTGTGCCGCTCCGGGAGAGCGTCACAGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCATCAAGCCAGTGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAGGCGACACGGTCTATCCCGCACGAAACCACCCACCGCCCCCACATACATTCGACAAACACATTCGCCAGCAGCACCTCGGCTGTTGCCAACAGCCCATCCCCGGCGGGCATGGCCGTTTCCTGCAAGGAAAAAAATCCCCCAACCGTTACCGGCTGGGGGAAAGGGCGTAAAAAAGTGAAAGGAATAACTTACTGTACGGCGGCGAAGGCAGCAGCGACGCGCTGTACGTTGTGATGGTTTAACCCGGCGATGCAAACACGGCCGCTGGCGAT # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 887428-886740 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033622.1 Dickeya zeae strain CE1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 887427 28 100.0 32 ............................ CGATCGGCTGGCTCATGGTGTTACAGCAGGCT 887367 28 100.0 32 ............................ AAGTAGAAATCGATAATCTTTAACAGGCGAGG 887307 28 100.0 32 ............................ GAAAACAATTTTTCCTTCTGGCGTCAGAATGA 887247 28 100.0 32 ............................ TGTAACCCGCAGGCAGCACAATAAGATACTAC 887187 28 100.0 32 ............................ TGGGCCAAATGATTGATGTGGCTGCAAAGGCA 887127 28 100.0 32 ............................ CACCACCTGCGACGGGGTATCAAAGCATGCAA 887067 28 100.0 32 ............................ AGCTTGAATAACCGGCGCGCATTACCCCGGCA 887007 28 100.0 32 ............................ ACCCGATGAGCTGAATAAGGGCCTGAACATGT 886947 28 100.0 32 ............................ TCCTGTTGTCCTCCGTGACAGAGGGCGGAAAT 886887 28 100.0 32 ............................ TGTCAGCCGCCGTAGTGACGGATATTGTTCAC 886827 28 85.7 32 ..GA.......CA............... CGTAGTTGTAGCTGTTATCGTGATTGGCACTG 886767 28 92.9 0 ...........CA............... | ========== ====== ====== ====== ============================ ================================ ================== 12 28 98.2 32 GTTCACTGCCGTGTAGGCAGCTTAGAAA # Left flank : GGAAATCCCACCCATGGCGATATCGCACTGGTCGGATTGAAAATCTGGCATCAGGGTTTTCCAACTGGTTTTCACCCATTCCACCTTCACGCCCAGGCTTTTCGCCAGCGACTGCGCCATCGCAATATCGATACCTTCGTAACTGCCATCCGCCCGCAGCGAGGTATACGGCTTATAGTCCCCGGTGGTACAAACCTTCAGCACCCCGCGCTCCTGAACCTGATCAAGATGAGAAGCCGCGCTGGCACTACCAGCCAGCCCCAATAACAACATCAATGAGAACCGTTTTTTCATGAAATTTCCCTGCACGTCACGCCTGTCTGGCAAAAACGTCACTGTAGCACGCCATATTCACGAATATCGCTTTTGACCCTTTTTTTTCGCCCCGTGATAACTCGTTGATTTTTAATGATGATAAAGGTGGGTTTTAAAAAAGGGTTTCACGACCAAAAACACGACTTTCCCTTTCAACATCAAGCCATAAGCGATAAATTGCTACT # Right flank : GATGACGGTCAGCAAGGGATGGGTGGTGAGGCGTGAACTGCCGTACAGGCAGCCGTGACGGGTTTACTGGCGTTAAAACTACGCTGAGGTGGGCGACTTCGCCGGATGCACGGCATGGATGCCGTGCAAGCCCATTCCGCGTAGGGAACGCGTAATGGGCGGTCCGAACAGCGAAGGCGAACGCCGAAGGCACCGCGTCAGCGGCGTAGTTTAGCCATCAAGCCAGTGGTCAAGGAGAGGTGGCGCTTGCACCTCTCCTTGTCGTGCGTGCGATGATGTGGCAAAGAAGCGACACGGTCTATCCCGCACGAAACCACCCACAGCCCCAACATAAATCAGGCCACAGCAAAATCCTTGCTGTTTACCAACAGCCCCAAAACGTTACTCCGCCGTCAACACCGCTACCGCCTTTTTACGCTGTTTGATGGCATAACCTGCCCCCAGCGCCAGCAGCCAGAACGGAATCAGCCACACGGAAATCTGAATGCCCGGCGTCATCG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 4 3959474-3958347 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033622.1 Dickeya zeae strain CE1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3959473 29 100.0 32 ............................. CGGGTTTACCCATTGAAAGGCGGTATAGCCTT 3959412 29 100.0 32 ............................. CCCTTCGGTTGAACTGGAGTGCCCGCCCCTGT 3959351 29 100.0 32 ............................. AAACATTCCCACTTCCGCTAGAACCTGTCCCA 3959290 29 100.0 32 ............................. TCCGTCGTCCAGATGAGCTACAGATGATAGTC 3959229 29 100.0 32 ............................. GCTACTACATTTACGCCGACACGGTTGATAAC 3959168 29 100.0 32 ............................. TCAATGACGGCCAGTATTGCGACCGACGGCGT 3959107 29 100.0 32 ............................. GGGTTATCCTCCGAGTTTCTTCCAGATATCCA 3959046 29 100.0 32 ............................. CTGTGTTTAACCTTCACCTTTGCATGCTCTCC 3958985 29 100.0 32 ............................. GAGATCATTTGCGTCGGCATCAACAAGGATGG 3958924 29 100.0 32 ............................. CGACGATTAGCGGATCACGGACCGCAATCGTA 3958863 29 100.0 32 ............................. GCGTTTCTGGTCGTCGATACGCTCTTTCTCCA 3958802 29 100.0 32 ............................. AGCTGGTTGATGCATGGTATAGCGCGCACGGC 3958741 29 100.0 32 ............................. TATGTACCCAGCCGCACGTTTCCATTCAGTAG 3958680 29 100.0 32 ............................. TCGGATTGCCTGCAGATGCGAAAAACCCGTGG 3958619 29 100.0 32 ............................. GTTACGCTCGGATGGTTCACGGATATCATCAG 3958558 29 100.0 32 ............................. GCAATTTTTTCACGGTTATCGAGTCGGATACG 3958497 29 100.0 32 ............................. GCAATTTTTTCACGGTTATCGAGTCGGATACG 3958436 29 96.6 32 ............T................ CGGGCGTTAAGCCGAGTTTACTGGCAATACAA 3958375 29 86.2 0 ............T............G.GT | ========== ====== ====== ====== ============================= ================================ ================== 19 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TTTTAACGCACGGCAGAAAATCGGTCAGTGTCGAAGGCTGGTGTTGTACCAGCCTTTCTTTTTGCAGTTTGCTCAGTTGTTTTATGCGGTATTCCCACTTCAGCGCCGTCGAGCGATCACCCGCCACACAGTGATACACCAGCGTCAACGGCCCCTTTCCGCGCAGTGATCGCGCACCTTTGCCATTCTGATGCTCTGCCAGACGCCTGTCGACATCGGTAGTAATACCGGTATAGAGCCATCCGCTGCCGGTACGCAGCAGATAGACAAACCAGATAGTCTCACTGTTGTTCACGCCATTTCCTTTTCGTGGTTTAGCGCTTATTTTACGGTGACAAGCCGATAAAGGCTGCCTGTTTGACGGCATTCATCGGTGGACGTGGGTGAGGAAAATTGCGACCTTTATTTATCAATAAGTTAGCGCTCTTTAACAACGTGAAAAAGTCGGTGGAATTTTTCAGGCTTTAAAAGTCATTATAAAACAAGTATATACTTTTAGA # Right flank : TAACGTAATAGTGCGGCACAATCCGTCGCGGTGTTTTTGGCTTTATTGTGATAATATTCACATCTATCGTGAATTATGTGTGTGTAATTTCTTTTTTGTGTGAATAAAACCACAAAATAGGTTGTCATCTCCGGGTGAAATAGCGGTATTCGCCGGAGAGATGACCGTGTGGTCGATAAGCGGGAGCCTTGTATGACTGATTTAACTGCAGCAGCGCAGCGTGCGCTGGGATTGATGGATTTAACCACCCTGAATGATGACGACACCGATGAAAAGGTGACGGCCCTGTGTCGTCAGGCCAATAGCCCGGCGGGGAAAACCGCCGCTATTTGTATCTACCCGCGTTTTATACCGCTGGCGCGTAAGGTGCTGCGTGAGCAGGGCACGCCGGATGTTCGTATCGCCACCGTGACCAATTTCCCACACGGGAACGACGACATTGATATCGCGCTGGCGGAAACCAATGCGGCTATCGCCTATGGTGCCGACGAGGTGGACGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 4226015-4225131 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP033622.1 Dickeya zeae strain CE1 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 4226014 29 96.6 32 .....................G....... TTCTGGATGGTGACACGGTGGCGCATTTTTCC 4225953 29 96.6 32 .....................G....... GCAGCATTAAAGCGGGGGAATCGAACCTTCGT 4225892 29 96.6 32 .....................G....... TATTTGCTGGCGATCGAAGTTAACGCCCTACT 4225831 29 96.6 32 .....................G....... CGTTTTGATAGCCATCGCTGAAACGAGAACGG 4225770 29 96.6 33 .....................G....... CAGATTGTCGATAACATCTCATCAGATGGCTCC 4225708 29 96.6 32 .....................G....... GTCATCACCGATTTTCAACTGGCAGGGGTGTC 4225647 29 96.6 32 .....................G....... TGTACAGTATCGCCAAAACAGCCAGTATGTTC 4225586 29 100.0 32 ............................. CAAAAAGCACACGGAACTGGGCGCAGTCTGAA 4225525 29 100.0 32 ............................. GATGTTTATTTCGCGTTGCAAAGCACGGACAG 4225464 29 100.0 32 ............................. GTGCAGGCTGGTGCTTGGGCAGAGGCCTGCGA 4225403 29 100.0 32 ............................. CGAAAACGAAATTTCTTGCTCTTCTCCTGCGC 4225342 29 100.0 32 ............................. CCGACACTATTATGTTTTCTACCGCTAATGGT 4225281 29 100.0 32 ............................. AGAGGGCATAAAGGGGCGCTGACCAAAAGTTT 4225220 29 100.0 32 ............................. CCCTCGGAGAGTGGCAACAGTTAGCAACTGAT 4225159 29 93.1 0 ..........................T.A | ========== ====== ====== ====== ============================= ================================= ================== 15 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTGAAGACGTGCTGGCCGCTGGCGAGATTGAGCCACCGCAGGCACCGCCAGACGCACAACCGCCCGCGATTCCCGAACCGACACCCTTTGGTGACGCCGGGCACCGGGGGCATGGCGGATGAGCATGCTGGTGGTGGTAACGGAAAACGTGCCGCCGCGCTTGCGCGGTCGGCTGGCGGTCTGGCTGCTGGAGGTACGCGCTGGCGTCTATGTGGGCGACACCTCGCGCCGGGTACGGGAGATGATCTGGCAGCAGGTGGTGGAACTGGCCGGGCAGGGCAATGTGGTAATGGCCTGGGCCACCAACACCGAGTCCGGTTTTGAGTTCCAGACCTTCGGTGAAAACCGGCGGATGCCGGTGGACCTCGATGGTTTGCGGTTGGTCTCTTTTCACCCTGTTGAAAATCAGTAAGTTAGCGCTCTTTAACAACCGGGAAAAATCGGTAGAATTTTCCTGCCTTTAAAATGCCTTATAAAACAGGTATATACTTTTAGA # Right flank : GAAATAAATCGGGCACGCGGTGTGATTACGCGTGCCCGATGTTGGACTGTCAGACAGGGTTAAAACGACTGCCAGTCGTCTGCGCTGGCTGATGTTTTGGCGGAGGAGGGTTTTTTGAGTGCCAAAGTCTTCGCTGCCGGTGCGGATGAGGGCGCAATCATCGGTCGGTTGCCCGCCAGATTGTAAGAGCCGCCCCTTGCTTCTTCGAGATGGAAAATACTGACCACCTGTTTTAACTGCTCAGCCTGCTGTTGCAGAGATTGCGTGGCATTGTAGCCTTCTCTGACCAGCGAAGAATTTTGCAGCGTGGTTTGTTCCATTTTATTAATCGCCAGGTTGACCTGCTCGATGCCCAGTGACTGCTCCTGACTGGCGACGCTGATCTCACCAACCAGTTCACTGACTTTGCGCACGCCATCCACAATCCCCTGAATGGAGACCCCAGCTTTTTCCACCAGTCGGTTCCCGGCGTCCACCGTCTCGACTGAATGGCCGATCAG # Questionable array : NO Score: 5.92 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.76, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGGTAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //