Array 1 404365-401315 **** Predicted by CRISPRDetect 2.4 *** >NZ_PJKQ01000003.1 Akkermansia muciniphila strain GP38 scaf-3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 404364 33 100.0 34 ................................. AGTCTCCATGACGGTCTCTACCTTGCCGGTGCGG 404297 33 100.0 35 ................................. GTTTGACGTTGCCCCCGCCCTTGAGGATTTGGACA 404229 33 100.0 34 ................................. CAGAACAAGGAATCCCTACCGTTTTAGTAGGGAT 404162 33 100.0 34 ................................. TGTAGCCGCTTGTGATAGTTTCCGGCTTGTGATA 404095 33 100.0 34 ................................. ATCGTATGCGGACAGGCCCATTTCACCGCAAAAG 404028 33 100.0 34 ................................. CACCGTCATCTACCCTACCAGGGAACTAGTGACT 403961 33 100.0 35 ................................. CGCTGGTGTTAGATAGTAGCGGTGAACGAAAAATG 403893 33 100.0 34 ................................. CTTTCGCAAGAGGCCACCCGGCCAGTTGCACATA 403826 33 100.0 34 ................................. CGTGTATGTGTTCTGTAGCTGATTGTGAGAGTTT 403759 33 100.0 34 ................................. TTTTAGTTTAGTGTTCATTTGTCCGGGGGTTGCC 403692 33 100.0 34 ................................. CGTTACCTACGGCGCGGGGTTGCCCGCCGATAAG 403625 33 100.0 35 ................................. GCTAAGAGAACACACGTTGCCACCATAGACACGGC 403557 33 100.0 34 ................................. GAGCGCAGGGGCAACGTCCCAAAAGATGATATCA 403490 33 100.0 34 ................................. CGGGGAAACCGGGGAAACCGGGGAAACCGGGGAA 403423 33 100.0 34 ................................. GAGAGCAGGGGCAACGTCCCAAAAGATGATATCA 403356 33 100.0 34 ................................. CCCCGTAGGATAAATGACAGTAGAGTGCGCTACG 403289 33 100.0 35 ................................. CGTCTCCAGTTCCGCGGAAATAGTCATCTGGGGAA 403221 33 100.0 34 ................................. TGGTGCTTGTGCGTTGTCCCATTGAAGGAATGCA 403154 33 100.0 34 ................................. CGGAACAAGGAATCCGGGGGTGCCGGGGAATCCG 403087 33 100.0 34 ................................. CGCAAATAGGACAAGGGATAAAATCCCCGCGCCG 403020 33 100.0 33 ................................. TATTATTTAGTTAGTGTTCCGGGGGTCATCCCC 402954 33 100.0 34 ................................. CGGCCTCATAGGTCTCGCATTCCGCTGGTGTGAG 402887 33 100.0 34 ................................. CCCGCAATAGAGAGCCTCAACGGCGTCTAAATAA 402820 33 100.0 34 ................................. TTTCTATTGTTATTGTTATTGTTATTGTTTTATT 402753 33 100.0 34 ................................. TGCAACGGAATCGGTGTGATATGCACCCGTACTG 402686 33 100.0 35 ................................. CCCGGTACGGGCAACTTGCGTGTAGGCTACCGGAC 402618 33 100.0 34 ................................. CTATTGTTATTGTTTTATTGTTGCGGGGATTCAC 402551 33 100.0 34 ................................. CATGTGGAACATTTTGAGCCCACGGATGCCATAG 402484 33 100.0 33 ................................. TGCTCAGCGTTACCTACGGGGCGGGGCTTCCAG 402418 33 100.0 34 ................................. ATCAACGGGGGACAAGCCCCCGGACAACAATAGA 402351 33 100.0 34 ................................. ATCGTTGAGTCTCTACCATTTGCCCCCGATGACT 402284 33 100.0 34 ................................. TGGTCTCTTGGTGCGGGGATAGGGGCATCATCAT 402217 33 100.0 33 ................................. CACCTTAACACGGCGGCCGGGGGCGTCAAGGGG 402151 33 100.0 34 ................................. CATGTGGAACATTTTGAACCCCCGGAACCCCCGG 402084 33 100.0 34 ................................. AATGAGGGTGGCAATTTCCCCGGTAGGGAGAATA 402017 33 100.0 34 ................................. GGCGAAAAGCACGAGGGATAAGATGCCCGCGCCG 401950 33 100.0 34 ................................. CATGTGGAACATTTTGAACCCCCGGAACCCCCGG 401883 33 100.0 34 ................................. CCACACGTCAATCATGTCCAGGTCTTCCAGGGCG 401816 33 100.0 33 ................................. TGTGTAAATGCTCATAATGTTTCCTTTCTTTTA 401750 33 100.0 34 ................................. TGCGAGGTCATAATTAACCCCATCCCACATATGC 401683 33 100.0 34 ................................. GACATATTTCCCTGGGACGTTGCCCCCGCGCTGG 401616 33 100.0 33 ................................. TTATATAGTGTTTTGTTCTCCGGGGTCATCCCC 401550 33 100.0 34 ................................. TATCCGTCTGCCCTCTCTAAAACAGGTACAAGGA 401483 33 100.0 34 ................................. TATGAAACGCCAGAAGAAGAAAAATTAGCCCTAG 401416 33 100.0 34 ................................. GGAAGCCTCAGCACATCACACATCGCCGCCTGTA GC [401393] 401347 33 97.0 0 .........T....................... | ========== ====== ====== ====== ================================= =================================== ================== 46 33 99.9 34 GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Left flank : GCTGTTGTCATGTATATTCTCATTACGTATGATGTAGCTACGGATGATAAGGCCGGGCAGCGGCGGTTGCGGCAAGTTGCCCGAGCCTGTGAAAATGTCGGACAGAGAGTGCAGAATTCCGTATTTGAATGTGAATTGACTCCTGCCCAATTGGTTGACATTAGGAACAAGCTGCTTAAGATTATTGATAACGAGAGTGACAGTCTCAGAATTTATCATATGGGGTCCAATTGGCATCATAAAATAGAACAATTGGGTAAGGAGAAAAGCTATGACATCTCCGGTCCCTTGATTATTTAAAGACTGTGGAACATGGCCTGTGCGCCAACCTCAAGCTCACACGAATTCCCCGGCAGGTCGGCGATTGGTGTAATGCATTGAGAATAGAAGATTGACAGATAAATACTCAGAAAGTGTAACCGTGCAATGACGGTCTTTTTAGGGAGGTTGGCGCAAAGTATGATTTGCTCTGTTGAGTAGTAATGTATAAAGTCGGTTGC # Right flank : CTGAATGGTGATTGTTATTTGCGGGTTTCCGCCCGTCGCACTCCTTGCAGAGTGCATGAAGAGGACGACGAGGCGGTGGGCTGGGGCGGCCTGTTGTCCTCTTGCAAGGGGATGGCAACAATGTTGCAGACATAGCACAGGAGAGGTGGTCAAGGGCGTTTTTCCACAATGCTTGATAATTTTTCTACAAAGTGTTGCTACGTTCCAACTCCTTAAAGAATCCAATTTCCAAAAAAATCCAGGATTTTTGAATCTGGAAGGCTTGTCAGTTAATTCCTCTATTTATTTTTCAGAAAGGGGGTGCTGATGCAGGTTGAGCTCCGCAGGAGGAATGGCCTGGAGCAGAGCCAGGATGGGGTCCTGCGGTGCGGCGCCTATTTCCCGCTGGCGTTTGAATTCCTCCTCTTCCTGCTGAAGGGCCGCCAGTTTGGTGTCTTCCACCAGCGCCTTGAATTTGTCCGCCTGAGAGTATTCTCCGTCCTCGTCCCGGAAAACGCGGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCTCCGCAAGGAGGGCGTGGATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.15 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //