Array 1 409-20 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMHG01000047.1 Acinetobacter baumannii AB_1650-8 AB_1650_8_48, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 408 29 100.0 31 ............................. GAAGGCCCGTAATTTAACTGTAAGCCGTGGT 348 29 96.6 31 ............................T CTTCCTGAGTTTTAATCCCATTTGCCTTACA 288 29 93.1 31 ......T.....................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 228 29 96.6 31 ............................T TCAGGGAATTATCGTGAAACTTTCATTGACT 168 29 96.6 31 ............................T GCACCAGCTGCTGGCTGGTTGAAATCTGCAA 108 29 100.0 31 ............................. GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 48 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =============================== ================== 7 29 97.6 31 GTTCTTCATCGCATAGATGATTTAGAAAA # Left flank : GTATATTGGCGTGACTGG # Right flank : AACACGTTCTCTATATCGCT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: R [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [20.0-16.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 10435-15088 **** Predicted by CRISPRDetect 2.4 *** >NZ_AMHG01000071.1 Acinetobacter baumannii AB_1650-8 AB_1650_8_72, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 10435 30 96.7 30 .............................A TAAACCATTTGACGTTGACCAATCGCAAAT 10495 30 96.7 30 .............................C AGATGAAACGTATGCTTTGCCTTCAGCTTT 10555 30 93.3 30 ............................TG GATCTGGTCGGCGAACACTATCATTTACAC 10615 30 96.7 30 ............................T. CCAAAATGGTCCTTTTTACCCCTTCATCAA 10675 30 96.7 30 ............................G. TGAGTATGTCATTGGCCACAACGTTGAATA 10735 30 93.3 30 ............................CA GAACAATAGGAAGCCTGATGTGCCATCCCG 10795 30 96.7 30 .............................C GCTGCGGGATTTGTTGAAGTGTTTTCAAAT 10855 30 93.3 30 ............................GA TTATTCTGGTTATAACTTTGTCTGTGTAAT 10915 30 100.0 30 .............................. CTTCCGCAATGGCCTTTTTGAATGCTTCAT 10975 30 96.7 30 .............................G CCACGTCAACAGCAGCATTGGCATTAGTAA 11035 30 93.3 30 ............................GC TAAAGGCTAAAGCAACCAAGGTGAATCTTA 11095 30 93.3 30 ............................GA CGAGCAACACGTCAACGAACTCAAAGCAAA 11155 30 93.3 30 ............................GA CATGGCGAGTTGCAGCAGGAATACCATAAT 11215 30 100.0 30 .............................. CTTGAGTTCAAATAAACGGACAAATGGGAT 11275 30 93.3 30 ............................GA GTAATGCAGCACCAACAGCAGTAATCGCAG 11335 30 93.3 30 ............................CA AACGTGGGTTACATCTAGTTGCCTGAGGAG 11395 30 93.3 30 ............................TA ACTTAGACTGAATATCTGATGCTAAAGATT 11455 30 96.7 30 .............................G CCGGTGTTGATCTGATATGCGTTAGCCATT 11515 30 100.0 30 .............................. ACGCGCCAAACATGAATGGGTTTAAAACGT 11575 30 96.7 30 ............................T. TGTGCCTCAATATGATTTCAAATATGGTTT 11635 30 93.3 30 ............................GC CAGGGGCAACATACCGCGCTAACGTTAGTG 11695 30 93.3 30 ............................GC AGTATTGACTGTCGGACTTGTGACAACCTG 11755 30 93.3 30 ............................GA CAGGAACCGTCACTGAAAGCGCACAGGCTC 11815 30 96.7 30 ............................T. GTTTCAGTTGCATAGTCAAACGATGAGAAC 11875 30 100.0 30 .............................. TAGCAGGTGATTACGCAGTCTTATCTAATG 11935 30 100.0 30 .............................. TAAGCAAGGGCTGACCCCGACCGCCGAGCA 11995 30 100.0 31 .............................. TGACTTACAGCGTTATGAGAGATCCCTAGTT 12056 30 93.3 30 ............................TG ATGATTGGATAGAGATTCATGCGTTAGATT 12116 30 96.7 30 ............................G. AAAAAAGAACATTTCCCGCCAAAATTGACG 12176 30 96.7 30 ............................T. TGGCAACCAGTCGCCCTATGCGACCTGATA 12236 30 93.3 30 ............................TG TAAAAAAGTTTAATAATTTTTTCAGTGAAT 12296 30 96.7 30 .............................G TTGCGATTCTTATTATGCGTGAAGTTACTA 12356 30 100.0 30 .............................. TCACGGGTAAAAGCTGTTTGACAGCTAAAT 12416 30 100.0 30 .............................. TGGGGGTACTGCTGCTGAGGTCATTCAATA 12476 30 96.7 30 ............................G. CCAAAACACGAAACGTTTGCCATTAATGGC 12536 30 93.3 30 ............................TA CAGCAATAACGACCAAACCGATATAGGTAA 12596 30 100.0 30 .............................. ACGAACATCATTTACTTGCTGAAGTTGCTT 12656 30 100.0 30 .............................. GCTCTCAATAATTCGCAAGTAAAAGTGGAT 12716 30 100.0 30 .............................. TGGGGGTACTGCTGCTGAGGTCATTCAATA 12776 30 96.7 30 ............................T. GTAACAACTTTAATGGAGAAGCCTTAATCT 12836 30 100.0 30 .............................. AACGAGAAGCGTTGCGTAGACTTACAACTC 12896 30 93.3 30 ............................TC TTGTTATTTCTGGTAATAAATATCAGAACA 12956 30 93.3 30 ............................TC AAATCTAAGCCATGCTCATTAGGCATAGGT 13016 30 100.0 30 .............................. CCTGTCTCTTGGTCAATCTTGGCACGTAGG 13076 30 100.0 30 .............................. TACCGACTGATTGTTGAGTGGCAATGTTAA 13136 30 96.7 30 ............................T. ACACATGAAGTCAGCAAATGCCACCATGTT 13196 30 96.7 30 ............................T. GAATCGGCCGCTTTGCGTATAAACACCACC 13256 30 93.3 30 ............................GA GAATGATTTAAATTGCATTAAGCCTTTAAA 13316 30 93.3 30 ............................TG GAAGTCATGAATGTAGGTGTTGAGGATGGC 13376 30 93.3 30 ............................GA ATTGCACTTGCTAAGCCAATAATGCCAACT 13436 30 93.3 30 ............................TG ATGCGGGTTGTCCACCAGTTATGACTACTT 13496 30 93.3 30 ............................CC AAGCTGTGAATGTTGGTAATGCTTTAAGCG 13556 30 93.3 30 ............................CG TCAAAACAATCAAAAAAGCAATGAGTACAA 13616 30 96.7 30 .............................G TGAATGGGATTTATTCGCAAGGTGATATTA 13676 30 96.7 31 .............................A AAAGTTTTTTTGACAATCAAGCCGGCAAGTT 13737 30 93.3 31 ............................TG CATCGAAGTCATAGAACGCTTTGAGTTTCCA 13798 30 93.3 30 ............................GC AAGTGTCACCTTTAAGTGCACGGAAGAAAT 13858 30 93.3 30 ............................TC CATTCTCGCTAAGTGGCATCACACGCGATG 13918 30 96.7 30 ............................T. GGTTGTTTAGTAAGTTCAAAGCCCGTTGTA 13978 30 93.3 30 ............................CA ATGGATTTAAAGATTTCAACCGCTTGGGAG 14038 30 96.7 30 .............................G TTGATATGATTATTAATATTAAAGTTGTTT 14098 30 93.3 30 ............................TG TGCCCATTCCCGCAAACACGGCGCAACGCT 14158 30 93.3 30 ............................CA TGACCCAACCACGTAAATTCATACCACACG 14218 30 93.3 30 ............................GC TCCGTAATTAATCAAGAAATAATCAAATTT 14278 30 96.7 30 .............................G TAGTTGCACCAGACTCCGCACAATCTAAAA 14338 30 96.7 30 .............................G CAAATAGATCAACTGGTGCGCCCTATGAAT 14398 30 100.0 30 .............................. CATCGAAATTTAGTTCTAATTCTTTAATTT 14458 30 96.7 30 .............................G TCTTTAATGTCGGCAACATGCTGTGCAAAA 14518 30 96.7 30 ............................G. AAATATGCTGCTTTAACCCGCCAAACGAAT 14578 30 96.7 30 .............................C CAGAAAAGCAGAGTAAAGCTTCACAGCCAT 14638 30 96.7 31 ............................G. AAAAAAGAACATTTCCAGCAAAAATTGACGA 14699 30 96.7 30 ............................T. GCTGCCTGCAAACTTGTTTGGGGCTTTATG 14759 30 96.7 30 .............................C TGGAATTCAGCAGTAAATAAGGGGTTAAGA 14819 30 96.7 30 ............................T. TAAAGCTAAATGAGGGTTAAACCTAAGAAA 14879 30 93.3 30 .......T.....................A CGTGAACAATTGTTTTAGCTTTGAACATTA 14939 30 90.0 30 .............C...T..........G. TACTGGGTTGCGGAATATATTCGCAATTAT 14999 30 90.0 30 A......A.........T............ TTTGATCTTTACTTATTCTCGCTTCAAACA 15059 30 70.0 0 .......A...T.....T..C...AGCGT. | ========== ====== ====== ====== ============================== =============================== ================== 78 30 95.5 30 GTTCATGGCGGCATACGCCATTTAGAAAAT # Left flank : GCAAATGGCTAGAACGATTCATTGATTATGTACATATCACTCAACCGAGAGAAGTGCCTCGAGCCAAGATTACAGGTTATGCGCATTACTATCGAGTTAATCCTAGAATGAGTGTTGAGGAACGTATAGTTCATCAAGCACAACGTCGTAATATTTCTTTGGATCAGGCTAGACAGCATTTTAAACAATATGTTGAGCAACCAGTGGTTGAACCATACGTAAGTTTAAAAAGTCTCAGTGCAAAACGTGAGGAAAATGTAGATCGCCCCTATCGTTTATATATTGGTAAATCACTTGTTGATGAGGCAAGGGATGGGATGTTTGGAACTTATGGACTAAGCCGAATGACAACAGTCCCAGAGTTTTGACCCAATATTTTTTCTATTCTTTAACAGCTCAATAAAATCAATAAGTTACAATAGGTCTTTTTTTGATTGGGTAAAATGCCAAAATCCATGATAAACACTTGTTGTAACTTATATTTTTACTATAATTTTATA # Right flank : TAAGATAAACAATAAATGATCACTGCTTAGTATTCTTTATCTTTAAATTTAAAAGAAGAAAATATATTCTGAGCTCAAGATATTTAGTGGTGAAATTTTTATGCGCGGTTTATACCTCATTACCAATGATGACCCAATCCAATTATTATTAGAAAAATTAGACGCCGCACTCGTAACCCGTCAAATCGCAATTTTACAGTACCGCCGTAAAAAAGTAGACAAAGCCTACCAGCCTGCTGAAGTTGAACAGATCAAACAATTATGTGAAAAATATCAGGTTCCTTTTGTCATTAATGATGACCTAAAACTGGCTGCTCAGTTTGGTTTAGGTGTGCATTTAGGCCAAAGTGACGGTGAAATTACCGATGCAAAATCGCAGTTACCAGAAGGTGTCATTATTGGCCGTACTTGCTTAAACTCTTTAGAGCTTGCTCAAAAAGCAATTGCCGATGGCGCAACTTATGTTGCCTTTGGTGCGGTTTATGCAACTGCCACTAAAC # Questionable array : NO Score: 5.27 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.23, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCATGGCGGCATACGCCATTTAGAAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCATGGCGGCATACGCCATTTAGAAATT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.10,-6.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-80.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //