Array 1 18906-20824 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSAH02000014.1 Trueperella pyogenes strain SH02 contig14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 18906 29 100.0 32 ............................. AAGAATCACAAGGCCAACTCGGCGAACTCGCG 18967 29 96.6 32 ............................T GAGCCGGAATCGGACATCAGCCAAAAAAGCGG 19028 29 100.0 32 ............................. TCGCTTCCGACATGCTCTCGCCCCGTGCACTG 19089 29 96.6 32 ............................G TTGACCCCTGCACAGCTTTACCGGTCGCAGCC 19150 29 100.0 32 ............................. CGGCGCGAATGGGGATAGGCGTGAGCCTGTGG 19211 29 100.0 32 ............................. CTGCCAACGCAGTCGTCTGAAACCATTATCGA 19272 29 96.6 32 ............................G GGCACGATCCACCTGCGCAGAGCTAAGAAGGC 19333 29 100.0 32 ............................. TGGACCTCGATCGGCGGGACCCCGACCGGCAT 19394 29 100.0 32 ............................. TCAAAACCCCCGACACGAGCCGCGCCCATGCA 19455 29 100.0 32 ............................. CCCGCCCTACCTGGTGGGCGTGTTCGAGCTTG 19516 29 100.0 31 ............................. CCGCCCTACCTGGTGGGCGTGTTCGAGCTTG 19576 29 100.0 32 ............................. CCCAACTGACATCGGATCCGGACGGTAAAGAG 19637 29 96.6 32 ......................C...... GGGCTGGTCTCCACCGGCCACGTAGGCGTCGA 19698 29 96.6 32 ............................G ACCGCAAGAGAAACATCCAGGCTTGAAATAGA 19759 29 100.0 32 ............................. TCCACGCCGAGCACCCAAGCTGGGAAATCCGC 19820 29 100.0 32 ............................. GATACGATGTGACGGTGTGGGTGGTGGACACA 19881 29 96.6 32 ............................T TTTGGTTGCCTTGCATGAGTGCATCATGCATA 19942 29 100.0 32 ............................. TGTGCATCCACTAGGCGCCGCGCCGTAGCCTC 20003 29 96.6 32 ............................G TTTCTGCGAGTTCCCGCCCCGAACACAAGAGT 20064 29 96.6 32 ............................G CAGACAGGGCACGCGCCTCGGTGCGTTACACA 20125 29 96.6 32 ............................G GATTTCGCGGCTAATGCCGGAGGGGGTCACTA 20186 29 100.0 32 ............................. CGGCTAGGCAGCTGACCAAAAACGTCCAGGAA 20247 29 100.0 32 ............................. CCACAGCTTACTAATCACGTTCTCGTGTACTG 20308 29 100.0 32 ............................. AAGGCGACCGGGTTTGTGGTCCCGGAAGGCGA 20369 29 100.0 32 ............................. ATTCCACCGACCCTCGCGTTAAGCCTACCACG 20430 29 93.1 32 .....................G......G TGGGCAGACACCAGCATTTCTCGATAGCGAGG 20491 29 100.0 32 ............................. GGGTACGATTTCCTCGGATATGGCGGAAATTG 20552 29 96.6 32 ...........................T. CAACAACCCTTCGATTACAGTGAAAGCGATGG 20613 29 96.6 32 ............................G GCTGACCAGAGCACCGATGATTATGTGGAACT 20674 29 100.0 32 ............................. AAAGTGGGAACGTGTCCTTCATGGTGGGGCTA 20735 29 96.6 31 ............................G GGTGGTAAATCGTTCAGTCCCGGGATGGGGA 20795 29 93.1 0 ..........................T.A | C [20820] ========== ====== ====== ====== ============================= ================================ ================== 32 29 98.3 32 GTGGTCCCCGCGCAGGCGGGGATGAGCCC # Left flank : CCGCGGTACCTGCAGGTCTGCGGGGCGACCTCACGAAATGGCTTATGGAGATCGCACCAGGAGTGTTTGTGGGGACTCCAAGCGCGCGGATACGGGAGCAGATCTGGGCACGCACCGTCGCACTTTGTAAAGACGGCCGGGCAATCATGGTTTGCTCCGCGGATAACGAGCAGGGAATGACGTTTCGAACCCATCGACACGATTGGGAACCAGCAGACTTTGATGGTTTGACCTTAATGATTCGGCCAGATGGTGGACAGAATTCTCAGAACAATCAGCGAAGAACGGGATGGTCGGACGCTAGGCATCTACGCAAAAAGTATTGATAACGACTGAACTGTTTGGGTATCCAGATTTTTGATAGTTCGAGAATTGTGGATTACGCGCGATGGTAGTGGATAGAGTGGATCCTGAGATATCCATTGGGCCATCGTCAGGTAGGGCGCAATAAGTTAAATGTATAATCGAAGTGCTGGCGGCAGAAATGCTGGTCAGCAACA # Right flank : AGTGACGGTTGGAAAGTAGCCCAGTAGTTGCGTCGTTGATTTTGAGAATCACGCGCAAAATGCGAAACTGCACTTCTTCTAAAACCTGCAAACTCGTACACGGCGTCGCGTCCTCCTCGGGTGCCCTCACAATTGTCAGGTGCCAAATCAAGTAGGCCATTGTCAGCTACTAGGAATCTGACAAACGAGAATCAATATCCATATGACGCTGGAGAATTCGTACGACTACCACGGCGTCGTCTTCGCACCGATAGAAGATAACGTGTTGACTGCCTGTCAGGCTGCGGCACGCTGATTCAAGTTCTTTGCGGAGGCGGTCGCGCAGAGGAAAATCTGTCAAGCTCTCTAAGCTAGTCTGGAGTTCTCGCAGATACAGCTCCGCCTGGCAGGGTCCCCATTTTTCTTCCGTATGATCCCTGATATTTGACAGGTCAACCTTGGCTAGTGGTGAGAAAGCGAGTTTGACTGGTGCTGCTTTTCTATGATGAATTAGTCAAAGT # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.90, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCAGGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [3,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGCAGGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.60,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //