Array 1 1229690-1226682 **** Predicted by CRISPRDetect 2.4 *** >NC_019689.1 Pleurocapsa sp. PCC 7327, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 1229689 37 100.0 42 ..................................... AGGATAAAAGCTTTTAACCAACAACCGGGGAAGGGGAACCAA 1229610 37 100.0 35 ..................................... TATTAATTTTTGAGGAAATTGAAATGATTTTTCAA 1229538 37 100.0 34 ..................................... AAGCAAACCCCTCGCCTCCCCATCCTAATTACGG 1229467 37 100.0 34 ..................................... TTCAATATCGAGCAGCCATTTGGGAACTTCAGCA 1229396 37 100.0 36 ..................................... TGACATTAACGTTGGAGCAAGCGTAACTAGCGATTC 1229323 37 100.0 32 ..................................... TGGGTACGAGTATCGCCGGGCTAACCATTTAT 1229254 37 97.3 35 C.................................... TTAATAGTTACGTGCGCTCGGATAGTACTAATGTA 1229182 37 100.0 35 ..................................... GAGAATTGCTCGTATACCCACCTTAAGCTAATAGA 1229110 37 100.0 35 ..................................... TATTTTTTAAACAAGGGAAATGTCGAAAAAGAATT 1229038 37 100.0 37 ..................................... TTCGTGCCCTTCTACATGAACGAGCCTCACCCATTAT 1228964 37 100.0 37 ..................................... CAGATTTCCATAATATCCTCCGCATTGGATTCCAAAA 1228890 37 100.0 33 ..................................... CTTGTTTCTTCATCCACTTCAGCATCCTTCCCG 1228820 37 100.0 37 ..................................... TCGCTCAAATTCTTTTTTCTGTTCGTCGAGCTGTTGA 1228746 37 100.0 34 ..................................... CCTTTTGGCTGGTGGGAACATTGATTCCTGCCAA 1228675 37 100.0 36 ..................................... AAATTTTATAGTCCAAGGCATCCCGTTTGCTTCTAG 1228602 37 100.0 36 ..................................... AAATTTTATAGTCCAAGGCATCCCGTTTGCTTCTAG 1228529 37 100.0 33 ..................................... TCTGACAGGATGCCGATTGGGAGAGGCTTTCGC 1228459 37 100.0 33 ..................................... ACTGCGCTTTTTTCCATTCCAGTAACTCTCCCG 1228389 37 100.0 35 ..................................... TCGGCTAGAAAGATTTCTACGAAAATCTTCCTACC 1228317 37 100.0 37 ..................................... GGATAAGCCGCGCTTGGTTGGACGCTACCGTGTAAGA 1228243 37 100.0 33 ..................................... GGCTTGATTTTTGACAGGAATATTTTCGTCTCG 1228173 37 100.0 35 ..................................... TTAAGGAAGAATTTTAATAAAAATAAAACCTATAA 1228101 37 100.0 34 ..................................... TCCCAAACCCCCGTATAGCCAAAAGCTTGGTAAG 1228030 37 100.0 39 ..................................... AGGATGCGTTCGAGGGACATTTTTTTAGATATTTCCTAA 1227954 37 100.0 39 ..................................... AGGATGCGTTCGAGGGACATTTTTTTAGATATTTCCTAA 1227878 37 100.0 33 ..................................... GAAAAAAACAAAGTAACGATCGGCGACTCCAAT 1227808 37 100.0 35 ..................................... TCACCGATCACCTCCTTCTTGAGGCGGATGTGGGA 1227736 37 100.0 35 ..................................... CCGTTCTCAATGCACCTCTAGCACTAGTTAGATCA 1227664 37 100.0 34 ..................................... GGACAAAAAATCAGAGCGTCAAATAGCCGATTTG 1227593 37 97.3 35 G.................................... CGGGAAGATTTTCGTAGTAAATCTTCCCGAAAAAA 1227521 37 100.0 33 ..................................... ATTCCAGTTTCACTAGAATAGCTTTCATCAAAG 1227451 37 100.0 33 ..................................... AAGGTGTAACCCGTTGCGGACGAACGTTTGTAC 1227381 37 100.0 40 ..................................... GTTTGGTCGATTTGCCTGATCAGGCGTTTCATTTCTTCAT 1227304 37 100.0 31 ..................................... ACCTGACTTGTACAACGACAAACAAGCCTGG 1227236 37 100.0 40 ..................................... CGAGAAGCCCAAGAAGCAAAAGGACTCGCAGGAATCGCCC 1227159 37 100.0 40 ..................................... AAGCAGGCCTCCATTCTCGAATATTCTTTGGCCCACCCGA 1227082 37 100.0 35 ..................................... TTATGGACATCTCCCGATTTAATCCACGGCTGCGA 1227010 37 100.0 35 ..................................... GAAAACTAAGCAAACATACCCTACGGAATCATGAT 1226938 37 100.0 34 ..................................... TCCTTAAGCTTACTCAGTACCTCATCAATCCCCT 1226867 37 100.0 39 ..................................... ACAGAGCGAAGAAAAATACTTGGAAACACTTGGCAGGTC 1226791 37 100.0 36 ..................................... AAATCTTTTAATATCATAGGAGGATTCGCAGGAAGA 1226718 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 42 37 99.9 35 ATTCCAAACATTCTTAATCCCTATTAGGGATTGAAAC # Left flank : AGCGGGAAAATTGAAAAAAGCAGAAGAATTTCGCTTGCTTTACGTTGCCATGACACGAGCAAAACGGCTTTTGTGGATGTCGGCAGAAACAAAAGCACCGTTTCGCTGGAATACCTTTCGGGGCGATCGCGTCAGTAATTTACAAGATAAAACCCCTTGTCCGATTTTATCTGCCTTGATGCGTCAGTTTCCCGAATCGGTGGTTAAGATAGGGTTTTAAAGTCGAATGAGATTGGCGCAAAATCACCTCGCGATCGCTATTTTCTTCTCCTAGTGCGCGACAGGGTAGGTGTAGAAATGAAGCTTTAGACAAAAGTCTCTCAACCCTCTACTCAGTCAAGTTTTAAGCACTATCACGTTCTTTAGCAACCCGCGCATCATACACAGCAAAGCTTTTATCATTTCCAGGTGGATTTTTTGTCACGGTTATGTTAAATTTAAAGAGGTTTCGCGCAACTGTACCTTGAAAACTAAATATAGTCAGCTTTTCGGACATCGGT # Right flank : CTTTAACCATATATGTATATTTTCCCCATGTAAGCGAAGCTTATCTTTCTTCTTGTTTTGTCAATCGCTCTAAAATCTCAGCAATTTTGTTGTGCGTCTCCTCTACTTTTTCTAGGCGATCGTAATAATCTGCTTGTGTCTCCCAAAAATTTGCTTGAGAGATTGATAGTCTGGCAACCATCTTATCTATCCGCTTGACCGATTGCGTTAATCCACTAATGTCATCTTTCAATTCGGATAGCGACTCCGTAAATTTAAGTTGAGAATTTTGCAACTCTTGCTGCACAGAAAGCATTTTGTTGAGTACTTCCTGCATTTGCTCTAAGGTCATATAGAGATACCGTGTGGTAGCCGATCGCGATTCTCTTGCCAGAGAGCGATCGCCTTTGTTTTACTTTTTATAGTAATAGTATACCGAAGTCATAATAGGTAGTGCGCTCATCGTAGCGTGCGCGTAAGCGCATATGTCCCGCTCGCGACCAAGACGCGAAGCGTCATGG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCCAAACATTCTTAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : NA // Array 2 2419748-2423389 **** Predicted by CRISPRDetect 2.4 *** >NC_019689.1 Pleurocapsa sp. PCC 7327, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================================== ================== 2419748 36 100.0 35 .................................... TCAAGGGCACGACCGGCGAGGCGCGGCTAGGCAAC 2419819 36 100.0 35 .................................... GCCGGCCAGGGCCTCGGCCACGGTGCGCGCGGCCT 2419890 36 100.0 38 .................................... AAAACCCAGTTTTTGCGAGTTAACGGCTTGTAAAAAAG 2419964 36 100.0 34 .................................... TAGGTCTGAGGCCTTGCGACAAGCACAATTAAAA 2420034 36 100.0 43 .................................... TTGGTAAAAGGATTGACCGTTCCTGTGTTCACAAAGGTTGCAG 2420113 36 100.0 38 .................................... CCTGAAAAAATAGGCGGATTTGTAGATACGCTTATTCC 2420187 36 100.0 41 .................................... AACATCCGCCGTCGGAGTTTACCTGCCCGTGCACCGAAGCC 2420264 36 100.0 38 .................................... ATAAACCCAGTTGAGATTGGCCGCCATGCGCACCTCGC 2420338 36 100.0 33 .................................... GGTCGTCCTGCCAGTCTCCCGCCACCAGCGGCG 2420407 36 100.0 37 .................................... CGGGCTTTGCCTGGAGCGCCCGGCGCAACACGGTGGT 2420480 36 100.0 37 .................................... GTCAGGTCCACGACCCGAACCCCTCGCCTGTGCGTCA 2420553 36 100.0 37 .................................... GACTGTTTGAGTATCAATGAGGACATTTTAAAACAAG 2420626 36 100.0 35 .................................... ACAAAATCACCAGCGAGCTGGAAACCCGCAATGCA 2420697 36 100.0 42 .................................... GTCGAGTATTACGACGCGCTGGCCGCCAGCTTCCTCGGCGAA 2420775 36 100.0 36 .................................... TATCTTTTTTGGATTGTAAATCTATATCAAGATTAA 2420847 36 100.0 38 .................................... TTCCTCATCGGATTCCCCACGCACGTCTACTGTTTCAA 2420921 36 100.0 44 .................................... ATCTCTGGTTACCGGCAAGCGCTTGTTTATGCGGCAGTTGGCAA 2421001 36 100.0 44 .................................... GGCTTACTTCAAGAAAGAGAACTCGGACCTCAGGCCACTTCAGA 2421081 36 100.0 42 .................................... CAAAAAGGTTTGGCAGAACCTAAGTCAAGAACATCAGAATGC 2421159 36 100.0 36 .................................... CGATAGAAGCGAGTTTCAGCCGAGGAACGCCGGGTG 2421231 36 100.0 42 .................................... AGCCGACCACTATAACGCGATGGTCATGTTCGTCAAACTACG 2421309 36 100.0 35 .................................... GCCCGTGTAGAGCGAGGCTGCGTCGGTCTGCTCTT 2421380 36 100.0 44 .................................... TTAGTGTAATAGCGCTCGATTTTAGTGATTGGCTTTTCAATTAT 2421460 36 100.0 37 .................................... CACAATTCCAAAACATCAAAGCTAAGATAGAGACCGA 2421533 36 100.0 43 .................................... CACTTTCACCATCGAATCCGGTGACACCCACCAGGGTTCCACC 2421612 36 100.0 41 .................................... GACAACCCCCATATCTTCAAACTCGGACGGTTCAAAGTCCG 2421689 36 100.0 38 .................................... TCAGCTCTCATAGCAGTGCTAAGCCCTTTAACTGCTTC 2421763 36 100.0 42 .................................... ATCTCCGATGCTACAAAAATTGCCAATCGTGCCGAAAGCAAA 2421841 36 100.0 38 .................................... TTTCATCGCCCATGAAAACCACTATCGACTGGATGCGC 2421915 36 100.0 39 .................................... ATCGGTTTCCCCATTTCCAGCGTCAACAGTTGACCAAAG 2421990 36 100.0 45 .................................... TCACCAATGCGGTCGGCATGGCACTCGCTGAAAAGCTACTCGCCG 2422071 36 100.0 37 .................................... GTCGCGGGGCTTGCCGTCGCGATATTTCCAACTTGGC 2422144 36 100.0 47 .................................... TCGCGAAGGTGAACGGCGCGCGCGGCGACGCGGCGGGGCTCGCCCGG 2422227 36 100.0 35 .................................... AGTATCCGGCTCACGCAACGAGAGCGCTCTTCATG 2422298 36 100.0 39 .................................... CTATTTACTTACTTATATAAGTAAGTAATTAATTTATAT 2422373 36 100.0 54 .................................... TTGATCGTCTTTATAGGCTGAATTGTTTTGCTCAGGCGTGTGTCCCAGCGATTG 2422463 36 100.0 39 .................................... TGGGCGCGCAATGCCTCTGTATTGCAAAAGTTGCCTTAG 2422538 36 100.0 37 .................................... CACAAGTTGGCCGAGTCGCAGAAAAAATCGGCGCGGA 2422611 36 100.0 37 .................................... GATGGGCAACTGGGTCTTCGGGTGTGACATCTGCCAG 2422684 36 100.0 36 .................................... ACTCCAATGTGGTTTTTACCTCTTGTTCCACACTGG 2422756 36 100.0 38 .................................... CTGAGTTGCATGCAGAGCCATAAGGGCATCGAGCTGAG 2422830 36 100.0 47 .................................... ACCTGGTATCTTCGCAACCCTACTCGACACACCGTAGTTCTTTGTAA 2422913 36 100.0 39 .................................... TTGGATAAAAATATTCGTTACCTTTTGCAGCTCCGCCAA 2422988 36 100.0 36 .................................... TAAACCACGTAAAATTATTTCCACCCAAGACAATTG 2423060 36 100.0 42 .................................... GTGGTAGCTCTAACATTACATGGATAATGGTTTGTATCCGCG 2423138 36 100.0 38 .................................... ACCTTCGGGTCAGGTGGGCTGGTTGAGCTTCTTAAGCC 2423212 36 100.0 35 .................................... AACCGAAGCCAGCTCTTGAGGTTCCATGCCAACAA 2423283 36 100.0 35 .................................... AACCGAAGCCAGCTCTTGAGGTTCCATGCCAACAA 2423354 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================================== ================== 49 36 100.0 39 CTCTCTATTTATTAGAGAAATTAGTTGAATGGAAAC # Left flank : CCTTTCTTGATTCGTTAGCTGAAAAGATGCTTTTCTATGTAGTCGTTTACGATCTTCCTTGCGATAAGCGGCGCAAAAAAGTAGCAGATTTATTAGAGGGATACGGTCAGCGGGTACAATATTCTGTCTTTGAATGTATCCTCACTAAAGCTAAGTATGATGAATTGCGCCAAAGATTGAAAAAACGCATCAAAGAAGAAGAAGATAGTGTCAGATTTTATCCCCTTTCCGGTCATACTTTAGCTCAAGTAGAAATTTGGGGACAACCTCCGCTAACCAAACCTCCCAGTTCTCTCATCGTCTAATTTGGGTTCACCCGAGAGCGAGGGCCTCGAAAAATCTTTAGAAAGCTTTTTTTTCGTTCAGCCCCTCGAACTCAATCTTAATAAGGGTTTCAAGATTTAGAAGTTCTTTTTTGTCGAGCAGGTAACTCCCTAAGCGCGACCCCCTCGCGATTGCCCTCTGGACACTAGTTGGGATATAGGTTTCAATAAAGAAGA # Right flank : CTCCACCAAGAATTTGGCTGATGAATTTAGCAGGGGATGAACAACAGCCCCATTCAATTAATTTCGGATAGCTAATACAGAGAAGCTTGGGCCATTAGGATGATCTGGCTGTTCAAAATTTATTTCAATTTCATTAAAGCCAAGATATTTAAGGCAGGCTAAGATATCCCCTCGACTCATCCAATTACTAAATGGTTGACTCCCGCCACAAAATCCCGCATCATCCAAGGCTGTTAAATACTCATACCGATATAGAGTATGTTTAAATCCGTTATGTTCTGCACTGATGCTGCTGGGAAATTTTTTCGCAATTTTGTGAGGGTTTGCTTGAAGCAAGTCACGGTCATAATAGTGAGTCCAAATAAATACTTTGTTGGTGACTTGGCTGATTAAACTGAGTAGTTCCACCGGGTTGGTCATGTGGTAAAGCACACCACTGGCAAGACAAATATCAAACTTAGTCGAACAATTTTGCAGATATTTTACAAAGTCACCACAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTCTATTTATTAGAGAAATTAGTTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 3 3806028-3805338 **** Predicted by CRISPRDetect 2.4 *** >NC_019689.1 Pleurocapsa sp. PCC 7327, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================================================================================================== ================== 3806027 33 85.7 35 ...T..GG.--........................ TCCCGCATTTCCTCGTGCAAAAGTACTTGCAATGT 3805959 35 100.0 38 ................................... AGCGGTGATGGATGCAATAAATTTTTAAACACAAATGT 3805886 35 100.0 39 ................................... AGATTACCTGCAAGTGATGGCTGAAGATAGTGGCGGCGT 3805812 35 100.0 36 ................................... GCGTATCCCTTGCCATTCCCAGTATTTGAAGGTGGT 3805741 35 100.0 36 ................................... CAAGGCACAAGCCCTAGCAGAAACGAAGCAAGTTGT 3805670 35 100.0 44 ................................... ATCAGCTCTTGGTTAGATAAAGGTTCTTCGACTAGCCCTAGCGT 3805591 35 97.1 114 .........C......................... AAATGCTATTATCTCCCGTCTCTGACGCAGAGCTTCAATCGAATCCCTGATAGGATAGGAATTTATTTTCTTTGTACGGATCGCTAAAATACCCGTCTTTGACGCAGAGCTTCA 3805442 35 97.1 34 A.................................. AAACTGCGGGAGTATCCTTAGATAGCTCTGGGGC G [3805439] 3805372 35 94.3 0 .GG................................ | ========== ====== ====== ====== =================================== ================================================================================================================== ================== 9 35 97.1 47 TTCAATCCCTGATAGGGATTTAGTTGATTTTCAAA # Left flank : CATACAGATAGCGATCGCTATTTGTCCGTTAGTTCTAGTAACAGTTATCGATAGTTACGCGATCGCTTCCGAAGCAGCCGATCTGTTTTATCATGACCTGGTCTCTTTGGCTCACATCGCTCTCCAATGACAAATTTAGGTTTGAGTGCGTAACTCCTGTAATCGTTCTGCTAATACACCTGCTCCAATGGAAATACCAGCCAGATAAACGTTCGCCTAGCTGGGTGAATTCAACCAATTTTTGAATGAATGCAAGAGAGATACGAATTACGAATTATTAGTTTTCCCTTCTATCAGTTAAAGGATTCAAAATCTCAAGCATAGTAGCCTGTCTTCTACGTCCTCAAGCCTCCGATAGTAATCGGCTTGAGCCTCCTAAAAATTAGCTTGCGATGCAGATAATCGAGACATCCATTCAAACATTTGTTTTCGGTCTTTTCTCCATTCTTCTTTGAGACTTGTTAAAGCGCAGGTAACTCTTTTTGTACTGCTAGCATCCC # Right flank : AAACTAGTCCACGCTCCACTAGGGAAAATTCTGTAAAACTAAACCAGGAAAATCGTTTCGTCGCGGGGTTGCTCTCCCCCAATTCGTTCAACCTTTCCTTGGCAGCAACCACAGAGAAAATAGAAGCGAATGCTGTCTGTTTCAGATTGAATCAGTTTGCTCAAACGAGAGCGAAGTTTAGCATATTGAGTCTCAGTTAAGTCGCACTCAAAAATACTATACTGCATCCACTGTCCGTAAGATTTCAGAATATTGTGAACCTTAGTCCGGCGCTTATCTTCCGAAATATCGTAACTAATAACAACGTACACGGTTTGACCGATCGATGAAATTATTTCAAAACTAAAGGTGGATATTTATCCGTTTCACCCATTAAATACTTCGCCAAGAGTCTCGCTTGAATTTCAAACGACTCTTGATAGGTACATTGACGCTGTAAAACTGGATGTTTAAACTTGGATTGTTTCTTTTGTTCGTACAATCTGAGAAAGATTTTTAAA # Questionable array : NO Score: 5.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:-0.93, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCAATCCCTGATAGGGATTTAGTTGATTTTCAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.30,-5.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //