Array 1 417290-417517 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020457.1 Lactobacillus amylolyticus strain L6 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ==================================== ================== 417290 31 100.0 36 ............................... GAGGCCACCACCAGCATTTTTAATCAAAGAACCAGC 417357 31 100.0 33 ............................... CTATTTTTTTGATGTTGAATTGCTTGAACCAGT 417421 31 96.8 35 ..............................G CAACGAGCCATGCAGGAGTCGAACCTGTTAATCGG 417487 31 96.8 0 ....................G.......... | ========== ====== ====== ====== =============================== ==================================== ================== 4 31 98.4 35 GTTTTTATCTAACTTAAGAGAAATGTAAATC # Left flank : GTTTCCAAATCTAGGTCGACGAGAAGATTTGGTAAATTTTGAAGAAGTAAAAATCGTTGATGTAGAAAAAAAGGATGAAGACTTAACTGTAAATCATGGTGCGTATATACCAGTTGAAATGTCTGAAAATATCGGTCTTGAAAATGAAGGTATTGGATATAAAGGAACGCATTATTACTTAAATAAGGACTATAAACTGGTAACGATAAAAAAAGGTCAGACACAACGTCGATGGAATAAAGTTGAAGTTATATATGCTTCTGGGTTTACGGTTTATAAGAGTTACGTTGATGAAGATAATAATGTAGTGTTCTTAGTTTAAAATCTGTCGATGTCCAATAAGCAGTTTTTACCAGTAGATCGACAGATGTGATAAAGCCTTATGTAATAGTTTTTCTAGAGATTCCAATTAATTTAGACTCAAAATGATGATATGTTTTGGGAGGTCGATAGAAATCATATTACAAAGCATTGATGTATAAGACTTGGCAAGTGGAACA # Right flank : CGCTCTCTAATAGGGGGTTGTACATATCCTTTATTTAACTTACGAGAATATACGATATTAACCATAAAGATAGAAAGTGTGAAAGGATGAATGAATATTTAGCTAAATCTTTAGATCAATCTGAAGGAAATCATTGTGAGACGATCGTTGAACATACTAATAATTTGTTAAAGCAATATAGTTTATTAAAGCAAGCTTATCCAGATATATTTCAAAATTTTTGGCTTAGTCAAGATCGATTTAACGATATGACAAAACAGGTAGATATTCGTAGTAAAGACGATTGGCGGCTTTTAGAAATTGCTTGTAGCTATCACGACTTAGGAAAAATGAACCTACGCTTTCAGAAAAAGGTAAAAGCAGGGCAGAGCTTTTGTAAAGGTGAAATTCCGCATGCATTGTTAAGTATTACGATGCTTCCAATTGATGAATTACAGAAGCATTATACTAAAGATCAAATCATAGCATTAATTTTTGCAATAAAGTGGCACCATGAACGT # Questionable array : NO Score: 2.78 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAACTTAAGAGAAATGTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:77.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 422009-424148 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020457.1 Lactobacillus amylolyticus strain L6 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 422009 29 96.6 37 ............................T TTCCTTCCTGAGCCAATTAAGACATTGGGCTACACAA 422075 29 96.6 36 ............................T TCCATGGAAGAGCCGATGTATATCAGAATACATAAT 422140 29 96.6 37 ............................T TAAGATTTCTCTTTTAATTATGGCAAATGGGTTTTGC 422206 29 96.6 36 ............................T TGCCTTTAGCAGTCTTCATAAAGCCTGCATCAATTA 422271 29 96.6 36 ............................T TAGAGTTTACCAATCTGTTAGCAGGCGAATACATAA 422336 29 96.6 35 ............................T AATTTCTTGACGGTTTATATATTACATGGTGAATG 422400 29 100.0 37 ............................. GATGTTTTTTATCGGCAATTGTTTCAGCCAATTTTGG 422466 29 100.0 37 ............................. GCAACGATCGTTGCGATCTTCTGATTCAGTAATTCCA 422532 29 100.0 36 ............................. GATATTTAATCCAGATATAAACTGCGCAACTTGTTG 422597 29 100.0 37 ............................. GTTTGGATACGCTAAAACAATTGCAATCAGCTAATTC 422663 29 100.0 37 ............................. GTTACCTAAATCTGCTTTTAATATTAATTTTTCTAAA 422729 29 100.0 38 ............................. GACGTCATTCGCTTATTACGAATATCATCGTTTACTTC 422796 29 100.0 36 ............................. GCTGAAAAACCTTATTTTTCTATTGATTTTGCACAC 422861 29 100.0 37 ............................. GTTGTCATTGATTAAGCAATTGGTCAAAAAGACAGGC 422927 29 100.0 39 ............................. GTTATAAGCACGAATTTCGGTCGGGCTTTGCATGTTTTG 422995 29 100.0 37 ............................. GGTTGCCAATGCGACTACGATCATGCTAATAATAATG 423061 29 100.0 39 ............................. GAAAAGCTTTTGATGTTGTTCATAACAAAAATGGCTTAG 423129 29 100.0 37 ............................. GTGAATAAACTAGCTTAACAATGCGCTTGCGATACGC 423195 29 100.0 38 ............................. GTTCATTGTGACCAACAAGACTGATGGTGAAATGATTT 423262 29 100.0 36 ............................. GCATAAGTAATGATGTTCACGTAGCCATTTGAATAA 423327 29 100.0 37 ............................. GCAGGATCTAATGAACCAAGTGTTTAACACCATGCAG 423393 29 100.0 37 ............................. GACTATCAGTCTGTGGTCAATGAAAATAAAGAATTGC 423459 29 100.0 36 ............................. GACAAATGCCGAGTGGCTTGATGATGTAGAGGATGA 423524 29 100.0 37 ............................. GACTATCAGTCTGTGGTCAATGAAAATAAAGAATTGC 423590 29 100.0 37 ............................. GACAGGAATGCCTAGCGCTTTAGCCTTGGCGACTGCG 423656 29 100.0 37 ............................. GTGGGATTGGAACGTTGTTCAAGACAACAACGATCCG 423722 29 96.6 37 .............C............... GAAACTTCGTCCCCTGCCACTCAAAAGCCTTATTGTC 423788 29 100.0 36 ............................. GACAAACTGGAATACATAGTTGCTCCCAGCCAAGCG 423853 29 100.0 38 ............................. GAAGTAAATAGCTTATTTGAAGTTACCAACTTGTTAGC 423920 29 100.0 37 ............................. GGAAACTACTGAGTTGCCATCGCCAGGCCCCCAATCA 423986 29 93.1 39 ............T.............G.. TTTTTGAAAGTTTAATCTAAAAGTTTTAATAGTTGGTAG 424054 29 86.2 37 ..C.........TC....G.......... TAAAGCCGAATTTTACACCAACTTTACTAAATATGCT 424120 29 79.3 0 .A......C...........G..AA...T | ========== ====== ====== ====== ============================= ======================================= ================== 33 29 98.0 37 GTTTTTATTTAACTTAAGAGAAATGTAAA # Left flank : ACCTATGAGCCTTATGTTATGGGATGGTAATAGATATGTATGTGATTCTGGTTTACGATATCGTAATGGATAAACAAGGTGCTAAAGTAAGTAGACATGTTTTCAAAATATGTAAAAAGTATTTAACTCATGTTCAAAATTCAGTATTCGAAGGTGAACTAACCAAGTCCCAGCTTGAAAGCTTGAAGAATGAGTTGGATAGATGGATTCGACAGAACGTTGATTCAGTGATTATATTCAAAAATAGAAATAAAGATTTGCTTGATAAAGAATTTATGGGTCAGGATTTAACTGATTTAACGTCGGATATATTCTAAAGAAGAATCTGTCGATGTAAGATACGAAGAAAATTCTGGGAGATCGACAGATTTGCAAAATGCCGGTACAATGATATTTGTGCGATTTGTCTAATGATTTTAGTGATTTTTGGATGCGTTTTTGGTTAGGTCGACAGATAGGCCGTTGAATCTATTGATACAGTAGGACTGGTAGTTGCAACT # Right flank : TTGTGTGATTAAAGTCAATTAAATATAAAACATAAAGATTTATATTTAATTTACGGGAAGGAAACTACAATCAAACATCCTACTAAAATCCTACCAATTAAACTGGTAAAATAGATAAGTAAGTATAGGGAACAATTTTTATAAAAGGGGAATAAAATGGCAGATAAAAAATTACTTCTAATCGATGGTAACTCTGTAGCTTTCAGAGCCTTTTACGCTCTTTATCGTCAACTAGAATCTTTCAAGAGTCCAGACGGCCTGCACACTAATGCCATTTATGCTTTTAAGAATATGCTTGATGTCCTTTTGAAGGACGTTGAGCCAACTCATATTTTGGTAGCTTTTGATGCAGGAAAAGTCACTTTTAGAACAAAAATGTATGGTGAATACAAAGGTGGACGTGCGAAAACTCCAGAAGAGTTGCTCGAACAAATGCCTTACATTCAAGAAATGCTGCATGACTTGGGGATTAAAACTTATGAATTGAAGAATTATGAAGC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTTAACTTAAGAGAAATGTAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 3 1206100-1204677 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP020457.1 Lactobacillus amylolyticus strain L6 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1206099 36 100.0 30 .................................... ATTGCGATGCTTCCAGTAGGCTCAACCAAC 1206033 36 100.0 30 .................................... CTACCTTGTGGAAGGATTCAACTGGCAAAG 1205967 36 100.0 30 .................................... TAAATGATGATGAATGAGTACATTATGAAC 1205901 36 100.0 30 .................................... GCTGCGGGCGCTCCGATCTATGGAGTTGCT 1205835 36 100.0 30 .................................... AAAAAAACATTCAAATTGAAGAAATGAAGC 1205769 36 100.0 30 .................................... AAGCAAATGCACACAAGCATAGATCATACC 1205703 36 100.0 30 .................................... AGCTGAAAACGTTGAACTGATCAACTACAT 1205637 36 100.0 31 .................................... CCAAAGCATTGTATTTATCTTCCCAGCCTAC 1205570 36 100.0 30 .................................... TATTGATTTTAAAAAAAGAAAAATCTATAT 1205504 36 100.0 30 .................................... GCTAAAGCCAATGCATCTGATGTGTATACT 1205438 36 100.0 30 .................................... CGAATTACGAACTTCACCACACGTATATTC 1205372 36 100.0 30 .................................... CCCTATGCAGTATAACCATACATGGAGCAG 1205306 36 97.2 30 ......T............................. CTAACATTAATCTTGATATCGCAAAAGATT 1205240 36 100.0 30 .................................... TGGATCGTGACAGTGACAACTGGGAAGTTG 1205174 36 100.0 30 .................................... TAGATTGGCTAAAGATAGCTCTAGCCCGTT 1205108 36 100.0 30 .................................... CCAATCTATTGTAGAAGTGGTTCATACTTT 1205042 36 100.0 30 .................................... ACGACACCGCGCCGATTAAGCAGGTGACAA 1204976 36 100.0 30 .................................... GTTGATTTAACCAAAATGTCACCAAGGGAA 1204910 36 100.0 30 .................................... CCACTTTGACATATTTGCACTAATGTGGGT 1204844 36 100.0 30 .................................... ACTTCGCCAAAGGGTCAGGCATGTCTCATT 1204778 36 100.0 30 .................................... CTTTTGAGATGTGTTCGGTCATTGCGTACT 1204712 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 22 36 99.9 30 GTTTTAGATGATTGTTAGATCAATAAGGTTTAGATC # Left flank : ACAAAAGATGTTATTAATAAATATTCATCTCACATTTTTAATAGTTTTATTGAAAATTTAGATGAAGAGAATCGTAACAAAATTATGGTAGCTTATCATAAATTAGAATCACTATTACAGGATTCATTGTTATTAGAGGATCTTCCGTTAGAAATCGATTTTAATGAAGATTTGGAAAAGTTGCTGAAATTAGAGAATCTACACTTAGATTCAAAGCTGATGGAGGAACCATATGCTATAATTGAATCGATCTTAAAGATTCATCAGTTATGTAAGCTGGGTTCGATTCCTGTGATCTGTAACGTCGCTAATTACTTAAATTCACAGCAACTTGATGAGTTATCTGAATTGGTGAATCAGCTTAATATGAAATTGCTTTTAATAGAATTCACAGATAAGGATTTTCTGATTGTTCCTAAGAATGCTGAATTCTACTATATTGATGAGGACCTTGTTGATTGGTATTAATCTTTGAATGAAAACTAGATTATAAAAAATCG # Right flank : AATCTGCGATAGCAAGAATCGAATCAGGATCGATGAATGTATCTGTTGGCTTATTATCCGATATTGCTGAAGCCACTCATCGGCAAATCAAGCTTGTTTTGGTGTAATTAAAATCTGAAAAATAGGCTTACTACGAACGATCACATCATAAATTTGATGTGGTCTTTTTCCTTTATTGCGTATTTGCACGAATTCAGCTAAGATCTAATCGACCTTTAAACAAAAACGCGCGAATTTTTGCTACAATTAAAAGTGTGTTTACTTTTTCGAAGGAGCAAATTATGAAAGTAAGAAAAGCTGTTATTCCCGCTGCGGGACTGGGGACCCGCTTTTTACCAGCTACCAAGGCCATGCCTAAGGAAATGCTGCCGATTGTTGATAAGCCAACCATTCAATTCATCGTTGAAGAAGCAAAGAAGGCCGGCATCGAAGATATTTTAATCGTTAATGGCAAAAACAAGCGGTCAATCGAAAACCACTTCGATTCAAACCCTGAATTG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGATTGTTAGATCAATAAGGTTTAGATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGATGATTGTTAGATCAATGAGGTTTAGATC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.70,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [60.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //