Array 1 681481-680995 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUM010000001.1 Listeria cossartiae subsp. cossartiae strain FSL L7-1425 NODE_1_length_946998_cov_47.649648, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 681480 29 100.0 35 ............................. TTGTTAGAGCCAATAAGCGCATCAATCGGATTAAC 681416 29 100.0 36 ............................. TTTAAAACCAGCGACTAGTAAGGTTATAGCTGCTAC 681351 29 100.0 37 ............................. GCGGGATAGGTTTCGGTGAAGAAAATCAAGTCTCCTG 681285 29 100.0 37 ............................. CTCATTGGAAAAATTCAATTTGTCGGTTTCTAAGATG 681219 29 100.0 36 ............................. ATTATTCAAGCACTAGATGTTGCTAAAAACGCATTT 681154 29 96.6 39 ..............A.............. AATAGACCTAAGTGTGATATGATTTTTTTGAGGGGAAAA 681086 29 89.7 33 .......T....C...A............ CCTGCCATCAGTTGTTTTATTCCTTGCGATTTC 681024 29 79.3 0 AC.....T......A.A......A..... | A [681000] ========== ====== ====== ====== ============================= ======================================= ================== 8 29 95.7 36 GTTTTAGATACTTATTGTGAAATGTAAAT # Left flank : TGCCACCACTTCAGCTGATATTTTACTAGAAAAAGGTGCCGTAGAAGTCATCGCTTGCGCAACCCACTCCGTCATGGCCGGAAACGCAACCGAACGTTTGCAAAGCTCCAATATCAAAGAAGTCATCACATCTGACTCTATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATTTCTATCGGCCGTATTTTAGGACGCGCAATCGAAGGCGTTCAAGAAAATCGCTCGTTGCATCCGTTGTTTTAAGGATTAATGCAGAAAACAGCAACTTTTAGAGTTGCTGTTTTTTTGCGTTTGGTTATCTGTCGACCTTTGATAGCGTGAAAAATGCTGGGGATCGACAGAAAGTTGGGAATGGTTGGTGTGAGGGGAGTTTGATGGTTTTTGGTTTTAAAAATCATGTAGAGAAGGGTGGATTTTCGTTAGTTTTTAGTCGGTCGACAGAAATCGGCTTTTGAGGTAAGATGAGAGTAAGAAGAAAAGTTAACGG # Right flank : GAGATTTGACTTTTAAAATCCTTACTCATCTTCCAACCCGAACCCGACTCAACAAGATTCGGGTTTATTTTTATCCCCCCCCGTTAACAATTCCGCAACAAACACATCAAAAACCCCCAATTTCCTCTGAACCTCCAACTACACCACACACTCAACCTATGCTAAACTCAAAGAGAAAGTCAAAACCACATACATAAAAGGAGGATTTAAAATTGAAAAAGACCCTAATCCCAATACTACTCCTAACAATTATCCTGGCAAGCTGCTCCTCTCCAAATGAAAAAGTAACAAAAGACACCAAAATCTCCAAAACTATCACCATCCGAGCAGATTACAACATCCCGAAAAACATGGAAGAACTAGCAAATAACAGCAATTACATAGTCAAAGTAAAGCTGCTGCAAAACAAAGAAATTGGCAAAGACGGCAACACCATTAGCAAAGTGGAAATCTTAACTTCCTACAAAGGCGATCTAGAAAAAGGCGATAAAATAGACATT # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 6058-4900 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAASUM010000002.1 Listeria cossartiae subsp. cossartiae strain FSL L7-1425 NODE_2_length_495198_cov_62.230540, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 6057 36 100.0 30 .................................... GAAAGAATAAAAAAGAGAAGAAAGGAGCTT 5991 36 100.0 30 .................................... GTTACCTCCATTGATTAATATGTGAATTTG 5925 36 100.0 30 .................................... CTTAACTTACGGAGATGTGGCTGCGAAAGT 5859 36 100.0 30 .................................... CTGACTTTTGATATCAATAACGGCAATGCA 5793 36 100.0 30 .................................... TATGGTTTTCCGGAAAACATCGAAATGGCA 5727 36 100.0 30 .................................... ACGGATAGTAATGCTAATGGTACATTTTAC 5661 36 100.0 30 .................................... CGTTAAATATCGCAGTACTAAAGATGGTAA 5595 36 100.0 30 .................................... CTACTATAGTTGTCATAGTAGGTAAAACTA 5529 36 100.0 30 .................................... GGTTTAAGAAAACTGAATTATCCTCATAAA 5463 36 100.0 30 .................................... TCAAATTTGGGATAAAGGAAACATTGTCTC 5397 36 100.0 30 .................................... GCTGATAGATATTTAAATGAATTAGAAACA 5331 36 100.0 30 .................................... TCTTCTCGGTAGTACCTCAAAAGTCGGAAC 5265 36 100.0 30 .................................... AAACGAATTGAGATACAAAGCTATGCCTTT 5199 36 100.0 30 .................................... TGGATTTGGCGCTACCACAACAGCAGTGGA 5133 36 100.0 30 .................................... TCAAATTCCGGGACGCTAACCGAAATGGTT 5067 36 100.0 30 .................................... GCAAGTCAGCTCGAATAAAAGTATCTTCTA 5001 36 100.0 30 .................................... TTTTTCAAAAGCATGAGTATAAACAATGAA 4935 36 77.8 0 .........................A.C..TGTCTA | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 98.8 30 GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Left flank : TTGATAAGTTAACTGCGACAATTAGCGAGTTAATAGGTTATGAGCTATTGGAGCATGAACTAGATTTAGAAGAAGATGAAATCACGGTTATTGAATTATTTAAAGCTTTAGGAATAAAAATAGAAACTAAAAGTGATACAATTTTTGAGAAATTAATTGAAATTGTACAAGTCTATAAATATTTATCAAAGAAAAAATTGTTAGTTTTTATTAATGTATGTGCTTATCTTACAAAGGAAGAGTTGGTAGAATTAAGACGGTATATTTCTTTGTATCAAGTGAAAGTTTTGTTTATTGAACCTAGAAAAACAGACGGCTTTTCGCAGGTTATTCTGGATTCGGATTATTTTCTGCATGTGGAAAATGGTGTTTAAGGACCGGACGTTCTTTGAAAACAAAATATAGTTTAATTAACTTATTAAAGCAGCATTCAAAATTGAAATCTTGCTATGGATAAGTAGCGCGATTACGGAATCTTGGAGGATAAAAAATTCTACGAG # Right flank : AGAAACAAATGTTTTCATAAAACAGTTCTTAGTAGATTTTAAAAATGACTACAAAAGTTTAAAAAGGAGACCACCACATTGAAAAAGTCCTCAATCATTTTTATTTTTTGCGCACTCCTCCTAACAGCATGCTCAACCACCCAAAAACAAACACAAATCACCGAAGCAACAGGCACGATAGAACAAGTAGAAACAGAATCGATTTTAATCAAAAACTTCAAAGAAAAAAACAACCCAGAATCCAGCATACGTTTCCAAATCACAGACAAATACTACGACGAAGCGGGAGACAAAATAAAACTAACCGAACTAACCAAAAATGACAACCTAAAAATCATTTTAACAAAAGATTTCCCGATCCAAGAAACCTTCCCAGCCCAGATAGACCCAAAATACGTCCAAAAAATCATCGTGCTAAACAAATAAAGCTCTCTCACCCGCAGAGAGTTTTTTCTTTCCTCAAAAAATAAAATCAAAACCCTTGCCTTGGTGTGAACTCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTAACAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.50,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [78.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //