Array 1 2877-37 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCWE01000001.1 Desulfofarcimen intricatum strain NBRC 109411, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ============================================= ================== 2876 30 100.0 35 .............................. ATCATTGTTCAAACCTCCTTATTAAAGCTACCAGC 2811 30 100.0 36 .............................. TATAATTTCTTTCTTTTTCTGGGGTACTTACTTGCT 2745 30 100.0 38 .............................. TTCTAATTTTTTAATTGATGAAGAAAATCAACATAGAA 2677 30 100.0 36 .............................. CAGTACAAGGTTATCAAACATCTTTTGATTCTAATT 2611 30 100.0 38 .............................. ATTAGTTTCAAATCATCCACCTCACCAACTGGCCAACT 2543 30 100.0 35 .............................. AAAAATTGTTGAACTAATGCACACATACCTACAAC 2478 30 100.0 35 .............................. TCTATCATCACGCGCCTGGAAAAACGGAGCGACAG 2413 30 100.0 40 .............................. ATTCAGATGTTTTTGTAAGTATTCATTGTAACTCTCATAG 2343 30 100.0 36 .............................. TCAGTAGAAAAATAATTTCTACATTTTTCATTTATG 2277 30 100.0 36 .............................. ATCCATTAAGGATACCACCAATAAATTTTTTAGTAA 2211 30 100.0 38 .............................. TTCAGATACTCTAATGCAATAAGTTCAATTTGTTTTTC 2143 30 100.0 41 .............................. ACGATATATCAGTATGCGATATAATTAGTTAAGTTGGTTAA 2072 30 100.0 36 .............................. TTGACGTTTAGAACTGACAAAGGTGCTAATGTATTC 2006 30 100.0 35 .............................. TTTCAATAATTTTTGAGTTATCAATCTTATTTTCA 1941 30 100.0 39 .............................. TTCACACAACATGTTTCCAACTCTTCTCATTTTTAATTC 1872 30 100.0 34 .............................. TCATTAAGGTGGTGATATTTTGTCAACTCCTATA 1808 30 100.0 38 .............................. AAGTAACCAGAAAAAATACCCAAACTAACGAACTATAC 1740 30 100.0 37 .............................. GTAAATAGTTTAATGTTTAAAATATTAACTAAGTTAA 1673 30 100.0 38 .............................. ACCGTAATAGAAAGGATAAACGAGAATGGAAGAATTAA 1605 30 100.0 36 .............................. ATCATTGTTCAAACCTCCTTATTAAAGCTACCAGCC 1539 30 100.0 39 .............................. CTGGGCTCAGGTCGATTTTAAATAATCATGTTTAAGACT 1470 30 100.0 37 .............................. AAAGTAAAATAGAAAAACAAATTGAACTTATTGCATT 1403 30 100.0 36 .............................. ATAGCTGCCAACACCACAGAAGCATATCGTCAAAGT 1337 30 100.0 36 .............................. CTCAACACACACATTGCCAGAGCCATCCAACGCACA 1271 30 100.0 37 .............................. TTTACAAAAACATGCAGAAAAGTTCAAAGTTCAGAAC 1204 30 100.0 36 .............................. TTAATTATTATAACGGTTAAAATTAATTATCCTTTA 1138 30 100.0 45 .............................. TTACTAAAGAGGAAGTAACTATTGGTGAAGATGGCAAAGTTACCG 1063 30 100.0 35 .............................. TAAAAGAGTAGGCAATGAACAGCCAACGTCAATAA 998 30 100.0 36 .............................. TTGATGATATTCCTAGTAATTTAGAATCTACTAATG 932 30 100.0 39 .............................. CTGGGCTCAGGTCGGTTTTAAACAATCATGTTTAAGACT 863 30 100.0 36 .............................. TTCTTTAAGTCTCTATAAAAAGACAGGTCACCCAAT 797 30 100.0 39 .............................. GCGAATTATCAAAATCATCAAGTATATCAGTTGAAACAA 728 30 100.0 35 .............................. CTGAGGATATAACGGCTGAACAAAAATTGGAAACA 663 30 100.0 36 .............................. CTCTTCAATAATCTCTTCATATCCAGCTAGGGCAGC 597 30 100.0 36 .............................. AAGACCTTCACATCGTTTTGGAGGTTTTAAAATTGT 531 30 100.0 37 .............................. GAATATATTCTAATAATTTCCATAAAGTGATAATTCC 464 30 100.0 36 .............................. GAGATAGGTGATGGATCATCAGTATGGCCAATTAAA 398 30 100.0 38 .............................. AAGTATCTAGCTCTTCTATGGCCTTGGCTGTCTCTGCC 330 30 100.0 39 .............................. TCTTTTCCATATATTTTTAATCTTGTACAAAATTCAGGA 261 30 100.0 34 .............................. TCATCAACATTGAAATTTTCTATAGTCCTAAACT 197 30 100.0 35 .............................. TCACGCTCATTTTCCGTAACCACAAGAATACGAGC 132 30 100.0 36 .............................. TGTGGACTTCCCCGCCAAGAGCCTCTTCTAGTTGCC 66 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ============================================= ================== 43 30 100.0 37 GTTTTTAGCCTACCTATGAGGAATTGAAAC # Left flank : ATTTGATGGGTGAAAAAGAGTATGAACCTTTCGTAGCTAACTGGTAAATAAAAGCGGGGTATAAGATGTTCATAATTTTAGTTTACGATGTCGGTGTAAAAAGAGTAAATAAAGTTCTAAAAAAATGCAGAACATACTTGCACTGGGTGCAAAATTCGGTGTTGGAAGGGGATATTTCTGAGGCGAATTATGTTAAGTTAAAGGCTGAATTAAGTAAAATAATAAACACTAAGGAGGATTCAGTAGTTATTTATAAGTTTAGAAGCCCCAAGTATAACTCGCGCGAGGTTCTTGGAGTTAAAAAAGGCGGAGAAGAAAATATCCTTTAAAAGATGTCGTCGATCTCTGATAGTGTAATTTCCTCAGGAGATCGACGACATTTCTATATAGTGCCTAGGTATTAATTTAATAGCTTTTAAGAAAAATCTACTTTTAAAATGCTTGTTTTTGGCAGTAATTTTGTGTAAACTAAAGTACAGGTAACAAGCACTTTTTAATGG # Right flank : CTCTACAAAAAAAGAGAAAGTGGCAAAATAGCAGTCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.64 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 6182-162 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCWE01000016.1 Desulfofarcimen intricatum strain NBRC 109411, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 6181 30 100.0 37 .............................. AACCTATCTAAATAACTACCAATTCCTAGCAGTCTTA 6114 30 100.0 37 .............................. CCCTTAACTTCAGCATCTATGCTGAGGTTTTCACACA 6047 30 100.0 35 .............................. ACCATGTAACATGGTTGAAGAATGAGATACTCAAA 5982 30 100.0 39 .............................. ATATATTCAATGCCACGTTTTTTAGCTTCTTTCAATATC 5913 30 100.0 37 .............................. CCACATTTCTCACATACGTTGAGAGGAGTACCTTGAC 5846 30 100.0 35 .............................. CAACTCCAGCGAAAAAGGCGATGGGGTTAAACTTC 5781 30 100.0 36 .............................. GTGCAGGTATCAAATATTTGCCAATATGGCTTGCCA 5715 30 100.0 37 .............................. TTGTACCTCAATAAGAAAACCTAGGGGGGTGGTAAAA 5648 30 100.0 36 .............................. CTCCGTGGTCTTATCTATTGCGGGAACTGTGGCAGG 5582 30 100.0 35 .............................. TGTTTATGTGCAAAATCTCTTAAATCATCCCAAAA 5517 30 100.0 36 .............................. TGGGTGCCAGGGTGGCTAAAAATAAGCAGGAACTAA 5451 30 100.0 35 .............................. AAGGCCACCGGTGCCAGCAGGCTGTTTACCCAAGA 5386 30 100.0 35 .............................. GTTGGTTTAGAATGGTGTTAAGCGGCAGGTGAGTA 5321 30 100.0 36 .............................. TCGGCAGTGCAGGTTTCTACCAGCGCAAAGAGGTTC 5255 30 100.0 36 .............................. ATCCGAATGTAACCGAAAAAATCCGGGCCAGGGAAG 5189 30 100.0 38 .............................. GCAGGGGTAGAGATTCGTAGGTTAGGACGGGCTGTTGA 5121 30 100.0 39 .............................. ATAACACATAATGCGTATTAAGTAGCTATCCAATCATAT 5052 30 100.0 36 .............................. TTACCCTACCTATCTTTTCAAGATCATACGGTTTTA 4986 30 100.0 37 .............................. AACCATTTTGTATAAGTAGTCAAGTGTTTTTTAAAAA 4919 30 100.0 40 .............................. CGTTCCACTAAGAAGCGGGGGCTTCCAAGGGAATTTCAAC 4849 30 100.0 37 .............................. ACCTAGAAACATATAACAGAATGAACACTGTAATACC 4782 30 100.0 36 .............................. ATAGAAACAACTAGATAAACACATCTAATCAAACCT 4716 30 100.0 35 .............................. AAAGATGAGATATTGAAAGAAGCAGAGAAACGTGG 4651 30 100.0 37 .............................. AAAGCGGAGGTCGGTAAAGATGCCTAAACATACAAGA 4584 30 100.0 37 .............................. TCGCCGTGAAAGTTGGTGATATATGTATTTTCGAAGA 4517 30 100.0 35 .............................. TCTTCAAACATATTGATACTAAAAGAATTCGTTAA 4452 30 100.0 37 .............................. TGTTTAAGACTGCTAAAAATGGCCTCAATCCCGCATG 4385 30 100.0 37 .............................. AAATACATGTACTCACCATCAACCAACATTATTATTT 4318 30 100.0 36 .............................. CAGAAGGTTATAAAAGATTCTCTATTTTTGAATTTT 4252 30 100.0 37 .............................. CCTCACCTTTGACATTCCCGACCCCATATTCACCGAA 4185 30 100.0 36 .............................. AAAACTCTAAAGTCCATAAATGATAAACCCTACTAT 4119 30 100.0 35 .............................. AACTGTCTAGCTCAGCTATGGCCTTGGCTGTCTCT 4054 30 100.0 36 .............................. AGAAAAAAATTTTTAAAAAACGCTTGATTTTCTATA 3988 30 100.0 39 .............................. GCAGTCTTAAACATGATTATTTAAGACCGACCTGAGCCC 3919 30 100.0 36 .............................. CCCTCTTCTATAGACAAAACGACGTGGTGATGGTTG 3853 30 100.0 37 .............................. CCTTTAACACAAGGGTTGACCAATGGGACAAGTGTTG 3786 30 100.0 36 .............................. TGTAAATGTCCTATTAGAAGCATTGCTCCGTCAAGC 3720 30 100.0 36 .............................. TTTCACCCCCTTATTAATATTTATATATAAACTGCT 3654 30 100.0 37 .............................. TATAATATAACACATATTACAGCATCAGCAACAAGTT 3587 30 100.0 37 .............................. CTATATATTGTGGTAGACAGGGCGCGGGTAAAACTAT 3520 30 100.0 35 .............................. ATCAATTAAATACTTTGTATTAAATACTCTTGAAT 3455 30 100.0 36 .............................. TACGAAGAATATAGTCCACGATTAGCTAAAGTATTA 3389 30 100.0 38 .............................. GTGGTTAGATCTAATATTGGCCTACACCCGGCTATTCT 3321 30 100.0 39 .............................. AAGCCTGTTGTAATCAATATCCCGGCAAACGTATCTATC 3252 30 100.0 36 .............................. AGTTGGGGCAATATATTTCAGTGGCAGAGCAGGAAA 3186 30 100.0 36 .............................. CTGTTCCGATATCCCCTGTCCGAATACTGCCCATAC 3120 30 100.0 37 .............................. TCTTAATGATAGGATTGGCCTGATTGCCCCAATGTGG 3053 30 100.0 35 .............................. AAGACGAACTTCACTTTGGGCACATGCCAGAGATC 2988 30 100.0 35 .............................. ATGGGTGACCCTTCCGCTAAGGATAGGATTTGGCA 2923 30 100.0 35 .............................. TATGAAAGGAGTGGTTGGCGCTGGAAATCCTGACC 2858 30 100.0 36 .............................. TCGAGGCAGAGCTTCCTTTTGAACGCCGGGGCACCG 2792 30 100.0 37 .............................. CACTAACCACCGTGCCGACCTTGCCTTTATAGATTCC 2725 30 100.0 36 .............................. CATTTTTATCCTTTGTTTCCACAGTATTATTCTCCT 2659 30 100.0 37 .............................. TGGTAGAATATATCCAAAATACAACCAGGAAAGGAGA 2592 30 100.0 37 .............................. TCAAGACCTACAGCCCACAAAACCGAACAAAAAAAGA 2525 30 100.0 37 .............................. TCGTTAGTTTGACTTGCAACTTCTTTACAGAAGGTTA 2458 30 100.0 35 .............................. ATAAATGGAGCAACATCCATTATTAATTTTTCTTC 2393 30 100.0 35 .............................. TGTGAAGGGTTCGTGGATAACGATGGAGTGCCGGA 2328 30 100.0 38 .............................. TTTTGTCTTATTCCTTCTTGGTTTTCTCTTGTTATTTC 2260 30 100.0 37 .............................. AATGGGGGAATGACTTGCTCTGCGTCGAGGGCGGAGT 2193 30 100.0 36 .............................. ATCCACATAACTTCCTCAACATTTACCCCCAACTTA 2127 30 100.0 37 .............................. ATGTCTCTACCGATTACCTTCTTGGCCGCGATCAGTT 2060 30 100.0 39 .............................. TATGCATAAAAAACAGAAACTACCTATGCCAGAGATACC 1991 30 100.0 36 .............................. ATTTCTTTTTCGCATTGTTTACAGTACATATTTTCC 1925 30 100.0 35 .............................. ATTATCTTCTATTATGGTTCCACATTCCTCACATA 1860 30 100.0 37 .............................. GTGAAGCGTTGGCAGCAGCTGGTGGCGGCTCAACTAT 1793 30 100.0 36 .............................. TGGAATGGTGTCTGCTTATGGTGGAGGTAGCCTATC 1727 30 100.0 35 .............................. TGCATGTAAACGCATAAAACCCAACTAAACATTTG 1662 30 100.0 35 .............................. AACCTACTTAAATAACTACCAATTCCTAGCAGTCT 1597 30 100.0 36 .............................. AATTCCGTGGCTTCCCAGTCAACAGCAACATCCATA 1531 30 100.0 41 .............................. CATTTCAACTACACAAAAGGCCCACCAAAAACAGCAAAAAC 1460 30 100.0 38 .............................. ATTCTATCCCTATTCGCACTCAATTCGCGCTCAATTCG 1392 30 100.0 37 .............................. AACTATTTTGTATAGAAAGTCAAGCTTTTTTTGAAAG 1325 30 100.0 36 .............................. GAGTTTTTAACATCAATCTCTCCTCTGTAGATAAAT 1259 30 100.0 36 .............................. TCAGAATGCCGGAAAAAGACAAAAAGAAAAACCTGC 1193 30 100.0 36 .............................. ATTTTCCTCCTTAATTTTATTTAAATTCTTTACCAC 1127 30 100.0 35 .............................. TTCTTCCAGTTTTGCCGAATACTTGACCATTTTCT 1062 30 100.0 37 .............................. TCTAATATCATGTTTACCATGTCTTTCCAACAACTAA 995 30 100.0 38 .............................. TGGAGTAAAGCAAGAGACTTTGTTTTGGAAGCAAAAAA 927 30 100.0 34 .............................. CTAAGTGTATTGATGTTTTACTGTGTATAGGGTA 863 30 100.0 40 .............................. TACAGCCCGCCGGGATTCTCGGCTGTCTCCCTAGCCCTAT 793 30 100.0 36 .............................. TAGGTAGTTTAAAGAATTTTAAAGGCTGCCTATGTG 727 30 100.0 38 .............................. TATAGTTTTTTATCATTATCATTATAAAAAGTATAATC 659 30 100.0 37 .............................. TAGTCAATTTTAGTCATATATGCAATGTCAAAATCTA 592 30 100.0 36 .............................. AATGATCCTACAATTTTGGAAGTCACTTGGAAAACA 526 30 100.0 36 .............................. ATGCAAGTACCATATAACACGGCCAGAAGCTATACA 460 30 100.0 36 .............................. CATTTGTTTAACTCTTCTATCATTTCAGGTATATAC 394 30 100.0 37 .............................. TAGTGTCTATATGCAAACCGTCGATGCCATGTAACAT 327 30 100.0 39 .............................. AAGATAAGGCGCACGGTCTCTGCTTCCGGCTCATAGATT 258 30 100.0 37 .............................. TTGTTTTCTTCAATCTCTGCCTTAGCCTTGGCAATCT 191 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ========================================= ================== 91 30 100.0 37 GTTTTTAGCCTACCTATGAGGAATTGAAAC # Left flank : TCAAATTCCTCTTTCGATACCCTCCATTGTGTTT # Right flank : CACCACCGATTCAAGTGTAACCAACTGACTTTACCCCAGTTTGATGGACACGGTAAATGGCTGGTACAATAAAACCAGTGAGAGGGGTGTCCATCATGAAACGTTATGATAAACAATTTAAAGAAGAAGCAATCCAACTGGTGCTAAACCAAAAGCGACCAG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,9.37 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 110784-109915 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCWE01000007.1 Desulfofarcimen intricatum strain NBRC 109411, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 110783 37 100.0 39 ..................................... ATATGGTTAGCCAAACTTTCCAGTAATTCTGGCGTCCAA 110707 37 100.0 41 ..................................... CAACAGGCAGGCTTTCCATCCGTGCGCCAAGCACATCCGGC 110629 37 100.0 37 ..................................... AAGACTTGTTCTTTTTTGACCCTAACCCGAAAAGGTC 110555 37 100.0 39 ..................................... GTTCAACCTTAGCCACCTTGAATACATAATCTCCGGCTG 110479 37 100.0 39 ..................................... CCTGAGTTAATGTCGTTTAAGTCAGTGCCGGACTTTTGC 110403 37 100.0 38 ..................................... TTGGTACCGTGGTAGATTTTCATCATTCTATTTCCTCC 110328 37 100.0 40 ..................................... AACAAAAAACTCCGGTGGGAGAGCAATGGTTTATAGAACG 110251 37 100.0 39 ..................................... TAGCGTTTTCGAACACGCAGCCGAGATGCTCCGGACGGC 110175 37 100.0 40 ..................................... CCACTCATAAACTTCGTTTGGTTCTTTTTGCTCTTCTTCC 110098 36 97.3 37 .........-........................... TTCAGCCAGAATACTCTACCAGATCCTCGGCATTCAG 110025 37 100.0 37 ..................................... TTTTTAAAATTTTCCATGTTGGTTAAATTAAAACTTA 109951 37 91.9 0 ..................................TTG | ========== ====== ====== ====== ===================================== ========================================= ================== 12 37 99.1 39 GTCTAAAAACAAAATAATTCCCGTAGGGAATTGAAAC # Left flank : TGTATGGAGTACGAACTGGAAGCCGGTAAAGCTGTAGGTCTAAACCGGCACTATATGACTACTAAAAACTGCGAGGGGCTGGATGTACCCATATACTTGCGTAAAGAAAAGTACTTTGAGCCCTTTGATTGCAATGGAGCATGTTTGCATTGTTTGGACCCCCGCTGCGGAATCCCGGATTTAGCCGGAGGCGGGGACTGGAAACTTAAGGATTACCGCAGGTGGAGCCGGGATATAAAACAACCTGCATTATTTTAAAATTAATTTTTTCGCAGCGGTGAACCTATTTTGCTTTTTTCTATATTTTAAAAGATCGAGCATCGCTGGTGTGCAAAAATCCCGGGGGATGCTCGATCTTTCAAAAAACCAGGAAAATCAAGGGATTGGGGACTTTACTTTAGCTGCAAATTGGTGTAATATAGTAAAAACCGGGCGGGATTTTGGCGATGCTCGAAAAACCGCATTTCAGGCCAGGTATTTCAACGGTTCCGGAAGCTGCC # Right flank : ACTGTTAATATCGATTGATGAAGGAAAATTTTACCCCTTGTTGAAATATGTTGAAAAAGGCATTCAACGGGGGTTTTTTTATGTCTGAAAAAGTTTGCAAGAGCGAGTTAATTGCAAAAAGGCGCAAGCTAATTTTAAAATTTTTGGCTTCTTGCAGTGGGGGACAGGCTGAATATGCTTTGATAATAGAAAAACTTATTGAAGCCGGTTTTAATGTTAAAGATCGAACAGTACGGGATGATTGTAAAGAGCTAGATAAGCAGGGATTTGTCATAAAAATAAAAAAGGGTGCTGCCATCACTGAGAAAGGTAGAATCATTATTAATAATGGAGAAATTGAGGAAGAGGTTAAAGAAAAATACTTAAAGCAGATAGCAATTCTAAAGGCCCTATATGATTGTGAAATGAGAACTAACCGGAATCAAGTTAAAGGGTTACTGACAAAGGATATTGTAAAATTAAGGGGTATTGGTGAGGAGGATACAGTTAAAGACATTCTT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAAAAACAAAATAATTCCCGTAGGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 2 115606-115258 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCWE01000007.1 Desulfofarcimen intricatum strain NBRC 109411, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 115605 37 100.0 39 ..................................... CCTGTATTATACGTACTTATAAATTGATCGCCAACACGA 115529 37 100.0 43 ..................................... TTGGTTTTTTAAAACTTTCTTCTCTTTGGTAGTTTTATCAATA 115449 37 100.0 40 ..................................... TGCTGCAGCAGCATCACAACCATAAAAGTATTCACGAGCT 115372 37 100.0 41 ..................................... AGCTAAATTCTCTCCCTCTCCACCGTACAAGGTGGAAGGGA 115294 37 94.6 0 ................................A...A | ========== ====== ====== ====== ===================================== =========================================== ================== 5 37 98.9 41 GTCTAAAAACAAAATAATTCCCGTAGGGAATTGAAAC # Left flank : GCTGCCGCTGCATAGGATATACATAAACCTTGCCGGGGGCACCACATTGCTGCAGTACATGACAACCCGCATAGCCGGGCTGGAGGTGGAAAACTGTGAGAAACTGACCACAGTGGCTATGATAGACAGAAGGCCGGCCCGTGAGCAGCAGGAAACCCCCTATGTTAAAGGTGAGATGATTGTTATCGAATAAATTAGGAATGATTTTTATCGAGCATCCCGGGCCGTGTAAAGCACCTCAGATATGATGACGGTTATGGCTTTTAGGGCATAATATGTAAAATATATTTTTCTATTTTTTGCTTTAAAAAGATCGAGCATCGCTGGTGTGCAGAAACCCCGGGGGATGCTCGATCTTTCAAAAAACCAGTAAAATCAAGGGATTGGGGACTTTACTTTAGCTGCAAATTGGTGTAATATAGTAAAAACCAGGCGAAATTTTGGCGATGCTCGAAAAACTGCTTTTCAGACCAGGTATTTCAATGGCTCCGGGCGCTGCC # Right flank : GATTAAACAGCAACCCTAAAACGGGTTGTTTTTTACTAATACTCATAATAAAATGAGGTATTTCTGTTGCTAAAACAAATATTAACTGATATCAATAATTTAGCAGGTCAAGAAGGACTGCGGGTATACGCTGTAGGCGGCTGTATCAGGGATCTTTTACTTGGTTTAGAACCTATAGATATAGACTTAGCGGTACCGGGTGCGGGTATATTCTCCTTTGCTAAAAAGCTAGCAGCATATACTGGTGCTGCCTTTGTTCCCTTGGACCCCATAAACAAGGTTGCCCGGGTTATAATTTCCCGGGGTGGCGAAAAGCTGCAGCTTGATATAGCAGCCTTTAAGGGACTAGGAATTATTGAGGATCTGTGCAATAGAGACTTTACCATTAATGCACTGGCTGTGCCACTGGAGGCTTACCTATCAGGGAAAATTGAAGAGAGTACGATTGACCCCACCGGTGGACTTAATGATCTCCGGAAGGGCAAGATTAGGGCTACCGG # Questionable array : NO Score: 9.01 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAAAAACAAAATAATTCCCGTAGGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 3 125010-124661 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCWE01000007.1 Desulfofarcimen intricatum strain NBRC 109411, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ============================================= ================== 125009 38 97.4 41 T..................................... TATCAGATATTTTAAACTCATACATCTGAGCAAAATCTAAA 124930 38 100.0 36 ...................................... AAATCGGTAGCGGAAGGTTTGAAGAAAGTAGCAGGG 124856 38 100.0 37 ...................................... CTCCAGCAATGTCTATGTTTCCAATTTTTCGCTAAAC 124781 38 100.0 45 ...................................... ATTCATACCCGAGCGAAAGTAATTCTGGAACAGTTGAAAGTGGCA 124698 38 97.4 0 .....................................A | ========== ====== ====== ====== ====================================== ============================================= ================== 5 38 99.0 40 AGTCTAAAAACAAAATAATTCCCGTAGGGAATTGAAAC # Left flank : TTACTTATGATATTAGTGATGATAAGAGAAGAAATAAAATATATAAACTGCTGCGTGATTATGCTGTTCCTGTTCAATACAGCGTATTTGAAGCGCGTTTAAAAGATGAAGATTATTTATTACTGCGCTATAAGTTGGAGCGGCTTATGAAAAGAGATACAGACAGCATAATCTTTTACCGGCAGTGTATTCGCTGTCAGAAGGATATACTACGATTAGGCAGAAGTGGAGAACCATTCGGAGATGGTATTTTTATACTCTAAAAGATCGAGCATCGCTGGTGTGCAGAAACCCCGGGGGATGCTCGATCTTTCAAAAAACCAGTAAAATCAAGGGATTGGGGACTTTACATTAGCTGCAAATTGGTGTAATATAGTAAGAACCAGGCGAAATTTTGGCGATGCTCGAAAAACTGCTTTTCAGACCAGGTATTTCAATGGCTCCTTAGTTTCATTTCTGAATATAATTACAAAACGTCTAAAAACAAAATAATTCCCGTA # Right flank : AACAGTTTTGTTTCTCGACGTTTCATTTTGCAAGAATACTCCTTTGGAATAAACAATTACCTGTATAGTTTTTTGACCGGTATAAATTTCATTCTCAAATACATAGAATAATAATACAGTGAGTTGTTTAACCGGAAGTCCTTTATGCTTCCGGTTTTTATATTTCTGCCATAAGGCTGTTTTTTTGTGCAAATTAACGGAAATTTTTTCTCCTACCTGTTGGTCTATAATATTAAAAAAATGAAAGGGTGATTTGAAGCTATGCTATAAGTTGCATAAATTAAAAAAATTTAGACTATTTTAGAGGTAAATGTATCCAATTTGTAGAATTTTTGAGTATGGTTAAACTTTTAACACAAATTCAAGGAGGTGAAAGCATGAATTTTTCGGATATTATCAAGGGTGCACTATTGCATGACATTGGGAAATTCATAATGCGTGCTAACAAAAAAAATAACAAAACCCACCAGGAGATAGGTGCCGGGTGGCTTGAGGAGCAG # Questionable array : NO Score: 9.01 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTCTAAAAACAAAATAATTCCCGTAGGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [68.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 4 127959-127471 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCWE01000007.1 Desulfofarcimen intricatum strain NBRC 109411, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 127958 37 100.0 37 ..................................... CTGGCCATTTCCAGGGAGGCGGTGAAATATATCCCGA 127884 37 100.0 38 ..................................... GCTTCCTGGCGGGTGATTCGTGTATAACCGCGTTTCTC 127809 37 100.0 39 ..................................... CATTGAAAGCAGAAACCAATACCCCGCAGGTTATTGTGT 127733 37 100.0 37 ..................................... GCCATTTCATCGGTATCTGCCCGTAGAAAAATATCCT 127659 37 100.0 42 ..................................... TATTTGAGCAATTTGTTTATCACAGGCCCAACGCTGGATGGT 127580 37 100.0 36 ..................................... TCTTAGTTCTAGCGCTCTAATTTGTTTCATTTTTAT 127507 37 97.3 0 ....................................C | ========== ====== ====== ====== ===================================== ========================================== ================== 7 37 99.6 38 GTCTAAAAACAAAATAATTCCCGTAGGGAATTGAAAT # Left flank : ACCCTGTCCTACCATTTATCGGGACTCAGTTTAAAAAAGCAGTCTACCCCGGTAATACTACTAATGATAGCTATGTCTTTTTCGGGCATAATTACACCTCTTTAGTAAAACGAAATGGTTTAGGGAATATATACTTCTAAACAGCTGCCCTAAATTCCTTTATATACGTGTATAAAATGTAAAATTATCCTTGTTATGATGCTGTAAAGATATTGGGTAGGAATAACACTGATCTAAATCTAGTTTATCAAAAACAACCACGGTGTTGCGCAAAAAATTATTCTTTGGTGATGGTATTATTATACTAAAAAAATCGAGCATCGCTGGTGTGCAGAAATCCCGGGGGATGCTCGATCTTTCAAAAAACCAGTAAAATCAAGGGATTGGGGACTTTACTTTAGCTGCAAATTGGTGTAATATAGTAAAAACCAGGCGAAATTTTGGCGATGCTCGAAAAACTGCTTTTCAGACCAGGTATTTCAATGGCTCCGGGCGCTGCC # Right flank : ATCACCCCGGTTTATATCACGCCTGTTATCCATATACCTTAAATCTTACGAATTTCAGCCCTTTCTTTTAGTTAATAATTTCAACCTGTACTAATTTAGATTATTTTTTTAAAATGTGAGTAAACAATATTCATTGTGTAACGAACGGTAGACGTGATATAGGAGGCTGCTCATATAATGGGCAGCCTCCTTTTCGTTGGTAGTAAACTTAGTTTTTATTATTTTCATAACCTAGAGTATATTGAAAAGCTAAGATGGAAAGGTTTAATGGTAGGATATGTAAATTATGAGGTGCTGATAGTTATGGAAATGTTAAAAACTAATAATGAACATATATATTTACCGATCTCTGCAATAGCCGAAATTTTATACTGTCCGCGAAATTTTTATTACCGGGTAGTTGAAGGTGCACAGGATTTAAATGCTCATGTTTTAGAAGGCCGTTTACAGGAAGATCGGCGTAACGAGCGTACCCGTGTTGCCAGGGAAGGATACAGCCA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAAAAACAAAATAATTCCCGTAGGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.27%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : NA // Array 1 594-755 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCWE01000008.1 Desulfofarcimen intricatum strain NBRC 109411, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 594 30 73.3 36 CAGAAG.C.A.................... TAAAAATCTCTTGCATTTTCTTTGTGTTTTGTTATA 660 30 100.0 36 .............................. CAGTGAAGTTATAATTATTTTGTTTCATTATTGAAA 726 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ==================================== ================== 3 30 90.0 36 GTTTTTAGCCTACCTATGAGGAATTGAAAC # Left flank : TTTACACCCTATCCGGATTTGTCTATCTAACTAGCGTGATGGACCTGTTTTCTAGGAAAATCATAGGCTGGCAAGTATCGGATAGTTTATCCACAGAGCATGTATTAAAGGCCATAGAAAAAGCTAAAGCGAATCGAAAAATTAGTCAACCCGTAGTTATCCACAGTGACCGTGGGTGCCAATTTGTATCTAAAAGCTACCTTGAAGCTACACCAGCAGCACATTTTATCCACAGTTACTCAAATAAGGGTAACCCATGGGACAACGCATGTATCGAAGCCTTCCATGCCTTAATAAAGCGTGAATGGCTCAACCGGTATGTGATAAAAAATGTTAGCCATGCTCATAACTTAGTGTTTGAGTATATAGAGACTTTTTACAATACTGTTAGAATTCATGAACATTGTGGTATGAGGTCACCTTATGATTTCGAAAACACTTTAGTGTGTTAAACTACTAAACTAGGATTATTTCTACTTTTAATTTGTCCGATATCTTGA # Right flank : TAATGACCTGAAAAATCCTGAGTATGATTTTTACTATGGGCTGCACACCAAGTTGCTCCGCTTTGACCACTTGCCCTAAAATCGGCTATCCGGGCTTCCCTTTCTTGTCGTAATTTTGATTTGGTCATTGTATAATCTTTCCAATATGTTTGTTTGGGGAAGATTATCTCATAGATTAAGCGGCAAATACAGGTGTGAATTTTTTGACGCTTACCCTTCAAAAAGAAGGTTTTTATTTTTTTTAACTGTGATTAAAGTCACAGTTAAATAGTTATCCATTTCATATTAGCCCCGGGGAAAAGATGATAACATCTCCTTAGAAAGATAAAACATTAACTAAGCCAGTTAACTTACCGAATTCCAGCAATTAATTATTTAAAAAATATACCATTTTAATAATTTATAAGGAGGAATTTTAATGTTTTGTTATCAATGTGAACAAACACCCCGGGGTGGCTGCACCAAAATAGGAGTATGTGGTAAGAATGAGGATATTGCCA # Questionable array : NO Score: 6.67 # Score Detail : 1:0, 2:3, 3:3, 4:0.50, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.00%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 1 19-7408 **** Predicted by CRISPRDetect 2.4 *** >NZ_BCWE01000036.1 Desulfofarcimen intricatum strain NBRC 109411, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================== ================== 19 30 100.0 36 .............................. AGAGGTTTTTCACTATCTCCGTAAACTCGTCCAAAT 85 30 100.0 35 .............................. GAAGATAAGAAAGATATCTTTAATCAAGTAGTCGA 150 30 100.0 37 .............................. AGGTGTGATTAAATGAAACCTATTCGTATATTTACAC 217 30 100.0 36 .............................. ACGGCAATAAGTACACTTGCCATCTTCTTTAGGCGG 283 30 100.0 36 .............................. AATATGATTTTGGATATGCACCGCAGGTAAAGGATA 349 30 100.0 36 .............................. GACCATTGTACAATATTTTCAGCCTAATTTGAACTA 415 30 100.0 35 .............................. CTATGACGGAAGCACAGCGTTTCCTTCGGGAATGG 480 30 100.0 36 .............................. ATTTTATATTTATATTTTATCACTGCTTATTAATAT 546 30 100.0 37 .............................. ATATTACTGCTGAAAATGGAATTCAAGTATTAAATCC 613 30 100.0 37 .............................. TTAATTGGAAGTATTTAAAGGATGAAACTCAGCCAGA 680 30 100.0 36 .............................. AAACAGAAAGGAAAAAAAATAACATACTAACATTAG 746 30 100.0 36 .............................. AAAAATAAAGTATGGAATAACGGAAGTCAAAGGGTT 812 30 100.0 37 .............................. TATGATTGATACTCTAAAGAATACAGACCAAGATACA 879 30 100.0 36 .............................. CAGCTTCAGGGAGCTGTCATGCTAAAGTTAAACAAA 945 30 100.0 36 .............................. AGGCTGTAAACGCTGAAAAGGGTCAAGAAAGGAACG 1011 30 100.0 36 .............................. ATGAATTTCAACAGAAAAATATTTCTGGGCAAATAG 1077 30 100.0 38 .............................. AAGGTAATAATCATCCGTCTTATAATAGAGTAAAATAT 1145 30 100.0 36 .............................. TCGAGTCAATGATGCCGAAGAGTCGGAGAGCAGAAT 1211 30 100.0 35 .............................. CTCCAACAAAAAATGATAACGGAACAACGTATATT 1276 30 100.0 37 .............................. AGAGAAGAACAAGAACAATTAAATAAAACATATGAAG 1343 30 100.0 39 .............................. ATTATACCAATTTAATTCTATCAGAGGATTCTCTTTCTG 1412 30 100.0 36 .............................. TATAAAGTGTTTTGTTGAATACTATTATTCCATCTT 1478 30 100.0 39 .............................. ATACAGGGAATTTTTTCAGCGGATAAGCTGAAAAAGTGA 1547 30 100.0 39 .............................. TATTGATATAAATCATAAATTAGAAAGAAATCAAAATAT 1616 30 100.0 34 .............................. ATAAAACTCCAATTGATTCACATTTAGGAGATTA 1680 30 100.0 37 .............................. ATTGATAATAAAGATCTTTTAGCTCATATAATTTAGT 1747 30 100.0 40 .............................. GATTTGTTAACTATGCCCCGTCTATAGGTATAGCAGCTAA 1817 30 100.0 39 .............................. TTATGCATAAAAATTCTATCAGTCATCCATTCTGATTTT 1886 30 100.0 36 .............................. TGATAGAATATACCCACTCAAACACTCAAACACTCA 1952 30 100.0 36 .............................. GAATTTGCTTCCATTAATTTTAATTTATCTGGATAA 2018 30 100.0 36 .............................. CTGCGGAGGTGGGGTAAGTTGGCAATCAAAGGCATA 2084 30 100.0 38 .............................. TACAGTTGATCCAATTAACAAGAAGAATTAAATTATAA 2152 30 100.0 37 .............................. GAATTTATTCAAAGTGTATGCAGCCACCTACAAGAAC 2219 30 100.0 39 .............................. TTCGGGATGCAGGGTGCTACTAAAATATTTGATGATTTA 2288 30 100.0 37 .............................. CTTCACGAAGGTAAGTAGTTGGGGAGAAGTACGGCGA 2355 30 100.0 36 .............................. AATTAACAAGAGTAAAAGCAAAAAGCATTGACAAAA 2421 30 100.0 37 .............................. TGTCCATAAAGTAATAGCTGTTGTATGTGTCAAGTTC 2488 30 100.0 36 .............................. TCTGCTCAAATAATCCCGGCACTTCCATCCTCAATG 2554 30 100.0 35 .............................. AATGCCGAGAGTAAAAGAAATAGAGGTATCATTAG 2619 30 100.0 40 .............................. CCTGCTTAGAGGACTACAACTATGTCATGCGGGGCAAAGA 2689 30 100.0 38 .............................. CTCTCAGTAACACCGGAAAAAGAGCTGAATATTTTAGC 2757 30 100.0 41 .............................. TCCGCAAAGTAGAATAACGGATACCCTCCAATACTGGCATG 2828 30 100.0 37 .............................. CTTAAACAAAAAAGCTCATACTCAGATATTTAAAGAT 2895 30 100.0 36 .............................. ACCGGGTGAGAGAATACTTCCCGGTGTATTGAAAGG 2961 30 100.0 36 .............................. TCTCGTCAAGGTCTTGATCGAATTTATCCTGTAGTA 3027 30 100.0 37 .............................. ACTGGTGATAGTGCTCCTGGAAATAAAGTTATCGCTG 3094 30 100.0 35 .............................. AAATAAAGCCTTATAGCCCGAAAAAGGCGGTGGGT 3159 30 100.0 36 .............................. GAAGAGTTTAACAAAATGACAATCAGAGAGGTAAAA 3225 30 100.0 37 .............................. TAAAATAATAGCTGTCAAGGAGGTTAACTAAATGAAA 3292 30 100.0 36 .............................. ATGCTAAAGACTTTGAAGTCCATAAATGATAGACCC 3358 30 100.0 39 .............................. AGACCGACCTCAGCCCAGTAACTACGCGGGATTGAGGCC 3427 30 100.0 37 .............................. CTCTTAACCTCAGCATCTATGTTGAGGTTTTCACACA 3494 30 100.0 38 .............................. AGGCTACTATTAGCAATTGCAATTCTTCATGTGTAAAC 3562 30 100.0 38 .............................. CTTGTTGTTAGTAGGTTTTAATTTCTGTTGCAATATTA 3630 30 100.0 37 .............................. ACCCTTCCGTGTTTAACTTTCTGGTTGGAAATAAAAA 3697 30 100.0 37 .............................. AAGGAGTTTGGGGAGGTTGAGTAAATGCTGCAACCAA 3764 30 100.0 35 .............................. CGGAACGCGCTAAACGGTCCAGTCGGTAAACGTAA 3829 30 100.0 36 .............................. TGATTTGGTTGCGCATATCTTCAATTGACTCACTAT 3895 30 100.0 36 .............................. CCGGCACCTTCGGGCTATGTATCCGGACATGGCAAG 3961 30 100.0 38 .............................. ATAAAAACAAATATAAAAAATCCACAAAATACTACTTG 4029 30 100.0 36 .............................. TGCTCACTGCCCCATTATTTGCTTCCACCGTTATCG 4095 30 100.0 35 .............................. CTGCACCAAATGCCCTGGTAGCAAGTTTTTGTGCC 4160 30 100.0 39 .............................. AAAAGTCTCTCTTTACCTTGCCCGACCTAAAGCTAGAAA 4229 30 100.0 36 .............................. AAAGTGTATACTTACATATCTTAAAAGGGGGATAAA 4295 30 100.0 38 .............................. TTGCCAACAACTACATACAAGCCGTTAACATAAGCTAT 4363 30 100.0 35 .............................. TCAAATTTGTCTGTATTGGGTTCATTTTGGGTTAG 4428 30 100.0 35 .............................. GTCTTGTGGTATGCTTTTCTTGAGACTGTCAGAGG 4493 30 100.0 38 .............................. TATGCAAAAATCACCTAACGACGCTGAAAAAGAACTAT 4561 30 100.0 38 .............................. TATGCAAAAATCACCTAACGACGCTGAAAAAGAACTAT 4629 30 100.0 36 .............................. TGTAAATGTCCTATTAGAAGCATTGCTCCGTCAAGC 4695 30 100.0 39 .............................. TCGCTTGTCCAACCCATGTAAGCATTGCAGCTTTAAATT 4764 30 100.0 38 .............................. CCCGGATGGCGAAAGATTATGGAATAAAGCAAGAGACT 4832 30 100.0 35 .............................. ACCGGTATAAGTCGAAGTCAAGTATATAGATTTAA 4897 30 100.0 40 .............................. GACTAACATTCAATGTTGACCGCACATCATCAAGTAACGG 4967 30 100.0 37 .............................. AAGTGTAAAGAGTGTCATAACCGTTCAAATTATGTGC 5034 30 100.0 39 .............................. CGAGATAGTTGATATAATTCCAAATACTAACTACATAAA 5103 30 100.0 37 .............................. TAGTAAACGTAGAGCATCAGAAATTGGGTATCAGTTG 5170 30 100.0 39 .............................. TACTTACTTTACCTTTTTCATCTGTGACAACTTCTCTAG 5239 30 100.0 45 .............................. AAAAAGGTGACAGGGTAGCGGTGCAAGCCCTTCCGGGCGGCCAAC 5314 30 100.0 36 .............................. GCAGTATAGCCCGGCAGATTGTTGCAGCCGGTGACG 5380 30 100.0 36 .............................. CCTGTGATACCATTGTGTTAATATCTTCACTGAGCA 5446 30 100.0 36 .............................. GAGTCATTGCCATGTAAAGCACCTACCACAACTTCC 5512 30 100.0 37 .............................. TTTCTAACCAATAATGAATTTGTTGTAAAACTATAGC 5579 30 100.0 35 .............................. ACAGCGGTAGAAGTTATTTTGACCGCATTAAAATA 5644 30 100.0 36 .............................. ATTCCTGAAAAGCATTTAAAATTACCTGAAAAGCAG 5710 30 100.0 36 .............................. TTAGGTTGCGGTTGTCACTACAAAGTATTACCTCCG 5776 30 100.0 35 .............................. TGAGTGGCAAGTTAAAAAAATATTCAATGGTAACA 5841 30 100.0 36 .............................. TAATCACAATCTAAATTAGATTCAAAGTAGTTATCT 5907 30 100.0 35 .............................. CTAAAATGGGATATCGTCATATTCATCAAAGTTTA 5972 30 100.0 35 .............................. TTTTATAGAGGGTTGGAATTTGAAACATTGCACAG 6037 30 96.7 36 .....C........................ ATAAAGAAAGTGGATGATCTTCAATAGCTACCCATC 6103 30 100.0 36 .............................. AATAACCAGGCTGTTTCTACTACATAATTTAAGGTG 6169 30 100.0 36 .............................. TGGTAGCACCACACCCTGGGCAAGTCAAGGGGTTGT 6235 30 100.0 36 .............................. TGCAAGTTGCAGTATACGCTCGTGTATCATCCGAAG 6301 30 100.0 36 .............................. TCTAAGTATAGCATCTGTAAATGTGTAAAAACATAC 6367 30 100.0 39 .............................. ACATGATATCATTGAGTCGAGTGTATAGGAGTCTATGGA 6436 30 100.0 37 .............................. GGACCTGGCAGACCACTACAAGCAGCTGGAACAGCAT 6503 30 100.0 35 .............................. AAACTATTTCCATGGTAACCTCCCTGTTTACATTA 6568 30 100.0 37 .............................. CGTGCCTCCGCACTACTATGTGGTGGGTGGTGAAGAG 6635 30 100.0 39 .............................. TGAGTGGAAGCAACGGCAGCAGGAGGAAGAGTTCGGAAA 6704 30 100.0 36 .............................. ACCTTGTCTTGTACTTGAATCATATATTTCATCCCC 6770 30 100.0 37 .............................. CCCGGGACACGGACAAGCTGTTACATGACAACATCAA 6837 30 100.0 38 .............................. TTTAGTGGAACGAACCTCATTTCCCCAGCTATGTGAGC 6905 30 100.0 37 .............................. TATAGCTGACTGTGTTCTTGCTATATGCTATCTCTTT 6972 30 100.0 36 .............................. TGAATTGGGCAAATGAAAGTTATGTTAGTTTCTTTT 7038 30 100.0 36 .............................. ATAATCAGCATTTCATTGAAGGTCTTTTGGATTTTC 7104 30 100.0 37 .............................. TGCGCTTCGTAGTGGTCGTCCTTTTTTTCCAATCCCC 7171 30 100.0 47 .............................. TCGCCTTTAACCAAAATCGTCCCATTTCCGTATACACTTGTTTTTAG 7248 30 100.0 35 .............................. TTATGGTTCCACATTTTTCGCACACATTGAAAGGA 7313 30 100.0 36 .............................. AAGTTTGTATTGTCAACTTTATACCGTTGATTTTCT 7379 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== =============================================== ================== 111 30 100.0 37 GTTTTTAGCCTACCTATGAGGAATTGAAAC # Left flank : AAAATTAGCAATAAAAAAG # Right flank : TTATAACCGC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTAGCCTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [26.7-10.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //