Array 1 12664-12214 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHXZ010000066.1 Yersinia kristensenii isolate IP38810, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12663 28 100.0 32 ............................ TGAAAGACAAGGATGAGCGCAAGCAAGGTCAT 12603 28 100.0 32 ............................ TTGGGGTAAAACCATTCGCGTGAGGCTAAAAT 12543 28 100.0 32 ............................ TATCAGCAAACCGACATTGGCCAGTTGATGGG 12483 28 100.0 32 ............................ TTAGTAATAACATTGATCCGGGACTTGGTGCC 12423 28 100.0 33 ............................ ACTTGCGGTAAATTGGGGGTCGATAATATTCAT 12362 28 100.0 32 ............................ AAGAATATATCTGGCCCTAATCCAGACTGGTT 12302 28 100.0 32 ............................ TCATTTACCCGCCAATAAAAAAGGCCGCGTTA 12242 28 100.0 0 ............................ | T [12219] ========== ====== ====== ====== ============================ ================================= ================== 8 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GGCGATTTAGTCGACTTACAGTCTGCAGGCTGGCTGAAAGGTTTGCGGGATTATTGCGAATGCAGTGACATTCTTCCGATACCGACCCGGGTTAAATATCGCGTCGTGCGCCGTGTGCAGGTGAAAAGTAATGCGCAACGGTTACGTCGCCGTTCTGTCAGTAAAGGGTGGTTGACGGAGGAGGAGGCGCTATTACGGATCCCAGATAATCGCGAGCAGCAGTGTAATTTGCCTTTTTTACGCTTAAAAAGCTTATCCAGCGAGCAAAACTTCTTGTTGTTTGTCGATCAAGGAGATTTACAGGAAACGCCAGTTAGCGGAACCTTTAGTGCTTATGGCTTAAGTAGCATAGCCACCGTCCCTTGGTTTTAACCCTCTTTTTTCAGCCAACTCTAACTCATTGATTTTATATAGAGTTGGCTGAGAGTATTAAAAAATCCTTTTTTATGGTTTTAGTGGTTTATTCTATTATAATCATTGTGTTACTCGTGTTTTTTACT # Right flank : TCTATCCGACTTCTTATTTCTCCTTTCTCGTTTCATACCTCCAAAGAGGTATATGTTTGATTTTATGCAAAAATTGTTTGGTGCTGAGTTTTTTTTGAGCTGGTTCATAAAATCAAATACCCACACAAAGAATATTTGATCTAAAACAAGCATTGTTACTACAACAAATCATTTACTGAAAATCCTCCTTACTATCTCCATAACCCGCACTGGGTAAATCTGTCATGGGTATCACTGAGTGAGTGTCTTACATTCCGGTGCGGGTTTAAAAATAAAAAAATGACTGTCTGGTGCAAGCACCGGCGGCGTCCGGTATGGAAAAACACACTGGAGTATCTATTGTGAGCAAATTTATAAGACAAATGTCGGTAGGGATATTGGCGCTATTGGTCATCGGAGGGGTGTTTTCTGTGTCGGCAGCACCTACGCCGCCGATTGAGGCCCGCAACGATAAGTTCGCGCAGCAGCATGCGGATCAGTTCACCTCTTGGTTGAAAACC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 22357-21549 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABHXZ010000066.1 Yersinia kristensenii isolate IP38810, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 22356 28 100.0 32 ............................ ACCAATGGCTTGACCTTGGCCGCGGAACAGAA 22296 28 96.4 32 ..C......................... GAACCTTGTCGGAACAAGGTATAGCTGACCTC 22236 28 96.4 32 ..C......................... TTGTCACTAAACCAGTTAAACACCGGTTTAAG 22176 28 96.4 32 ..C......................... TTGACTCGCACCACATATATTTTATCTTTCTT 22116 28 96.4 32 ..C......................... GGCGTGAATATTAAAAACGTTGAACCTAAGAT 22056 28 100.0 32 ............................ AGCGTCATTTTCACGTTGCCTGTCCTCATTGT 21996 28 100.0 32 ............................ AGTACCGTGCCACAGGGATTTTCGTTGGTGGA 21936 28 100.0 32 ............................ CATTGAAGCGTAACACGCATACAGTCGGGATT 21876 28 100.0 32 ............................ CACAGCGGCAGCGGCTATCAATTGTTGGCCAA 21816 28 100.0 32 ............................ TAGAACCAGACCTTCTGGATGACGGAAACCGA 21756 28 100.0 32 ............................ TGATCCAGCCGCGCGGGATTTCATCACTGACC 21696 28 100.0 32 ............................ ACACTGAGTTGTCAATCCGGCGTGTGGAAAAC 21636 28 100.0 32 ............................ ACACTGAGTTGTCAATCCGGCGTGTGGAAAAC 21576 28 71.4 0 ...........T........TAGCACC. | ========== ====== ====== ====== ============================ ================================ ================== 14 28 96.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCGGCTTTTTGGGCGATTAAACACAAACAAGCTTTACAAGCGGCGGAGCTCTGTTTATAGTTCGGCTCGTTGCGGAGGGGTGGCCGAGTGGCTGAAGGCAACGGTCTTGAAAACCGTCGACGGGTAACCGTTCGAGAGTTCGAATCTCTCCTCCTCCGCCATCATTTCTCTGTTTCTCCCGCTGATTATCCTTGCTTAATCTCCTGAAGTACCTCAAGTTTATCAGTCATATTTATCCTTTCTGACATAACAAAACTAGCAAAGCCCGCCCACAAAATAGTGAACTATAAGTTTTTCAAACTCTCTGTTGTTCGTCACATCATCCGCAGCAGAAAAAGGCTTAATAACATTTTGGCTAAACCTCATTTTAAACCCTTTTTTTAACGTACTTTTTAACTTATTGATTTTATATAAAAAACCCCAAAATTTTAAAAAATCATTTTTTATTACTACGGTCTAATGCGCTTTTATTATCAGTAAGTTATCTGTATTGTTCTACT # Right flank : AGATTGAGAACCCAAACACATATTGTTACTTGCAGTAGGGTTATTACTACTTTCTATTACCGACTTGGCCAGTATTGGGTTAGTGTAAATAAATTAATCATATCAATATCGTGCGGACCTCTATCTTGGTAAGACGCGCTCGCTTACTGACAAGATATAATTAACCCGTTAGAAATATTTGGGCATTCTGTCTAAGGAGGTTGTTGGCGATGGACAATTCTATTCATTCCTCTGATTTGAAAACAATTCTGCATTCAAAACGTTCAAATATTTATTATTTAGAATATTGTCGTGTATTAGTTAACGGCGGGCGGGTTGAATATGTCACTGATGAAGGGAAACAATCGCTTTATTGGAATATCCCCATCGCAAACACCACTGTAATCATGTTGGGCACGGGGACCTCTGTGACTCAAGCCGCTATGCGTGAATTTGCCCGCGCGGGTGTTTTAGTCGGGTTTTGTGGCGGTGGTGGCGCACCACTTTTTGCGGCGAATGAA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTCCACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //