Array 1 900625-903201 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009509.1 Methanosarcina mazei WWM610 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 900625 37 100.0 39 ..................................... AACGTGATAACATTATCAAAGATGATCTGTCAAGCCAGA 900701 37 100.0 34 ..................................... CAGGGATGATTTCACACAATACCCATATCATGAA 900772 37 100.0 38 ..................................... ATAGATGTGGCCAGTGCAGGCCAGATAATTTATTTAGA 900847 37 100.0 35 ..................................... TTGTAAATTCTGGGCATGTCATCCTATAGCGGAAA 900919 37 100.0 35 ..................................... TGAAGTTGGATTAAGACTCCATTACAAGCCTCTAA 900991 37 100.0 35 ..................................... AAAGTATAAGCTGTTCTGTGGAGGAACCGAAAAAA 901063 37 100.0 35 ..................................... TCTGTTTTATCAAGCTGCACCCCAGGTCCTGCACT 901135 37 100.0 37 ..................................... CAAGTGGTCCTTTGTTTAAGATCGCTGCCTGTTCAAA 901209 37 100.0 34 ..................................... TAAAGAGTGGTTAAAGGACGAATCCAAAAAATCA 901280 37 100.0 35 ..................................... TCCGTCGACTCCGTAGTCTCTCAAGCCGTAATACG 901352 37 100.0 35 ..................................... AGTTTATATACTCAACAAGGTTAATATACTTAAAC 901424 37 100.0 34 ..................................... CCCTGTGGGATGCCTAATTTATCTACCCAATCGC 901495 37 100.0 35 ..................................... AGAGTAGCAAGCCACGAACCAGACGTAATAAGAGC 901567 37 100.0 35 ..................................... AAAATATTAAAAACCGTGTAGGGTGGATGCATGTA 901639 37 100.0 35 ..................................... AGAGGTAATACTCAATTTTTCCCAATGACTTTACA 901711 37 100.0 34 ..................................... AGGAATAACAATGTTTAACCTCAAAGACTTTAAG 901782 37 100.0 36 ..................................... AAATTGTATTCTTCTGGAATCTCAAGCCCGTATTTA 901855 37 100.0 36 ..................................... AGGTCCCCGCGTGCGAGCAGGCGACCCACATACTCC 901928 37 100.0 36 ..................................... CAATGTCGTCGTCAAAAATCCTGTTCTCATTTTCTG 902001 37 100.0 35 ..................................... TTAGGCTTTCTCATCAGTCTTTTGAACTTGATGAG 902073 37 100.0 36 ..................................... ATGAAATGACTATGGATACCTCAGTCGATGGATACC 902146 37 100.0 36 ..................................... ATGGAACCAGAAGCAGCTATACTAAAATTTCAAGCT 902219 37 100.0 36 ..................................... TTAAGGTCGTAGGCATAAGCGACTGATGTATATAAG 902292 37 97.3 34 ..................T.................. TTTGGATTGGCTTAATTCCCTTCTCTGCATGAAG 902363 37 97.3 35 ..................T.................. TAATAAAATTTGGGTATTGAAACCATTACATTACC 902435 37 97.3 37 ..................T.................. TTTTCTAAAACTGTCCCGATGAAAGTATAATCATCAA 902509 37 97.3 35 ..................T.................. ATTCTTCGGACTCACCGGTTAATTCCGGAAACACA 902581 37 97.3 36 ..................T.................. TCTGAGCAATAATAGGCGTCATTGAAGCCCACATGC 902654 37 97.3 35 ..................T.................. TAAATGTGGTCAGATGAAACACATAGCAGGAGTTG 902726 37 97.3 36 ..................T.................. CCCGTCTGGTAACTATGAAGAGTACGACGGTACTTT 902799 37 97.3 38 ..................T.................. CACACTCTATTGAATTCTTCAGGGTTTTCCCACATTTT 902874 37 97.3 37 ..................T.................. TACACCCGCATCCATTGTTTGAGCACATTTCAGTTAG 902948 37 97.3 34 ..................T.................. CTGAAGGAGATTACATCCTGCAGTTTTATATTGA 903019 37 97.3 35 ..................T.................. ATCTGTAGTCATTTTAGATATACCTCGCAAACATT 903091 37 97.3 37 ..................T.................. TTTCATTTTTTGTGACACTTATTGTTATATTGTCATA 903165 36 73.0 0 .....T.....T......T...G.-GCCT.......A | C [903197] ========== ====== ====== ====== ===================================== ======================================= ================== 36 37 98.4 36 ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : AGAAAGCGAAATATTCATTGCCTCTAAAAAATACCATATAAAAGGGATTGTGGACGAGGTTCTATTTCTGGAAGACGGAACCGCTGCCCCTCTTGAATATAAATTTGCCGAATACAAAGATAAGCTTTTTAAGACTTACAAGTTTCAAATGGTTTTGCAAGCACTTTTAATTAGAGAAAATTACAATATTGAAGTAAACCGTGCATATATTTGTTATACTCGAAGCAATAGTCTAGTCAAAGAGATTGAGATCAGCCTTTCTGATTTCAAAAAAGCAGAGAAAATAATCGAGGAAATTCTCGATATCGTTCAAAAAGGCTTATATCCCAAGACAGCCAGATCTTCTAGAAAATGCGTAGATTGCTGTTACCGGAATATCTGCGTATGAGAAGTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGTAAGAATTTTAACCCCAAAAAAGGGCTCATTTCAGGTCTTTTCTGGCCAAATAACGGAAATTTTTGCCCT # Right flank : AGTGTTGTGACCTGTGTAGATGTCCGACATTAATATTTCGAAACTTCTACAACAGCCAATATATATCCTCAGTGCGGTAAAGAGTCTTAGAGACATCTGGAAGAGAAAAAAGAAGAGCTGGAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAATATCCTGAAAGAAATTGGAAGGTAAAAGACATACAGGAAGAGACCTAAACTGTATTATAGCATAATAAGAAAAGAACTTCTGGCAGGAGGAATAAAAACTATGACAGAAATGACTCTAATCGAAGCACTGAAAAAACTTGCATTAATCACCAAAAAAGGACTGGATGAACTGATTCATATCCCAGGTAATACAAGTGGACCTATTACAATTGGTGAGGCAATTAGAGAAATACAGGATCACGATTCTGACATTTCTGAAACTGATGATTATATAATAGGTAGTGACGGTATTTGGAAAACAGGGGAAGATGGAAGCGAGATAGTATATCAGATTAAAG # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGCGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : ATTCGCGAGCAAGATCCATTAAAACAAGGATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 2 1610347-1616437 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009509.1 Methanosarcina mazei WWM610 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 1610347 37 100.0 37 ..................................... ATTGTGTTGGACGAGTCGGCGTTAGTCCTGAATATAT 1610421 37 100.0 35 ..................................... TAGTCCCCTACCTGCTTATATGGCCATTTCTTCGG 1610493 37 100.0 37 ..................................... TCCGTTCCTAATTCATTTTCTGACTTATCTATAATTC 1610567 37 100.0 35 ..................................... TTAGATACGCCTCATTCAGGAACGGGTTAAGCTGG 1610639 37 100.0 35 ..................................... GAACACCTTCTCGTTCTTTTTTGGCCTGATACTTT 1610711 37 100.0 36 ..................................... ATAAGGCTTTGTTACCTGTACCTGTGACCTTATTAG 1610784 37 100.0 35 ..................................... GTTTTCTCCGCGATACGGTCAATTAGGTCCATCTG 1610856 37 100.0 35 ..................................... CTTCACGCTCCTATCACCTTGTCATTGTAGTAAAG 1610928 37 100.0 37 ..................................... ATTACAAACTGTGTAACCGGAGGCTGTAAGATATTTG 1611002 37 100.0 34 ..................................... AATGCGGTGATCGTGTAAGATTCAGAGGTCAGAA 1611073 37 100.0 37 ..................................... AAGAAACAAAGATCCAGCTATCCAGAGCAACTTACGA 1611147 37 100.0 37 ..................................... ATTCACGCAATCAAGGGGATTGCATTAGGCTTGTATA 1611221 37 100.0 34 ..................................... ATGGGACAGGTTGGAGAAATTTTTGCACTTGCTG 1611292 37 100.0 37 ..................................... CTGTTCAGTTCACTGACCTCTCCGAAAATGCTCTCTC 1611366 37 100.0 34 ..................................... ATCTCGTCTGAAAGTTCATGAATCAACTCTAATT 1611437 37 100.0 35 ..................................... CCAAGCCTGATTATGAGGTAAACTGGCATCACCGG 1611509 37 100.0 38 ..................................... ATTCTGGAAAAGTTCTTCACTTTGTACCAATCTTTTTT 1611584 37 100.0 34 ..................................... ATCTCACAGATGTGAACGGGCAGAATAGTACAAA 1611655 37 100.0 37 ..................................... CAACCAAACGAGGGCGAAAAAAGAAGCTCGGTTCCCG 1611729 37 100.0 38 ..................................... TTTAATAACCATTCCCTAGCCTGTTTTTTATACCCTCC 1611804 37 100.0 36 ..................................... CAAATACTCGTACACTACCACGACATAACTCGCATA 1611877 37 100.0 35 ..................................... AAAAGAGATACGGAAGCTATAGTTTATGCACATGT 1611949 37 100.0 35 ..................................... TTAAGAGTCTTGGAAAGGAAAATTCGGTTTTTATT 1612021 37 100.0 37 ..................................... CAAGAAATCTATGCTTGGAGAAGATGGGAAAATAAAA 1612095 37 100.0 35 ..................................... ACCACAATGGGAAACGTGGATATGGGAGGTACTGT 1612167 37 100.0 35 ..................................... TGAGATAAGCCTCATTCAGGAACGGGTTAAGCTGG 1612239 37 100.0 40 ..................................... AACTCAGATAACTATATAAATCAACCACACCATTATAAAA 1612316 37 100.0 38 ..................................... ATGAGTGAAAATTACCCGGAAAACAAAAGTTTGTATGT 1612391 37 100.0 38 ..................................... CATTCGTGGTCCCTATACCTACAGAATTTCAGATAAGC 1612466 37 100.0 35 ..................................... AAAATATTGATAAATTCAATGATAATTATAGAATT 1612538 37 100.0 35 ..................................... AATGTTATTGTTATTCTGCTTTTTTGCTTTGAGTT 1612610 37 100.0 35 ..................................... CAATCCCAGCCAACCAACTTCCGGCAAACGGAAAT 1612682 37 100.0 35 ..................................... ATATTATTAAAGGCTTCTTCAAAATCGAAGTATTG 1612754 37 100.0 35 ..................................... CATCACAGTAGAACAAAAACGAGAGTTGAAAACCT 1612826 37 100.0 38 ..................................... CCAGGTCCAGGATGTCCTACAGCTCACCCGGAAAGTGA 1612901 37 100.0 37 ..................................... TATGCTCTGAACTTGTACTAATCATCATATGAAACGA 1612975 37 100.0 34 ..................................... TCAAAACAGAAGTGCAATGAATAAGTGTACAATA 1613046 37 100.0 36 ..................................... TGAAGTTTCGGAATGATACTGATGAACTCCTTGAAA 1613119 37 100.0 37 ..................................... CCGAAGAATACGAACCGATCACACTGAAACCCGACAA 1613193 37 100.0 35 ..................................... GTCAATATGGCATCTTTGTCTGGAATATAGGGGAC 1613265 37 100.0 35 ..................................... TACAGTCGCTTGTTATGCCCGCTACATCGTTTTTA 1613337 37 100.0 36 ..................................... CTCGACCTCGTCGTCCTCGTCTACTTCCAGCGCGTT 1613410 37 100.0 38 ..................................... TCGGTTAAGCCCGTCTATACGTTTGAGTTAAGCCATGT 1613485 37 100.0 35 ..................................... AGCCTCCTGCATTTCAAGTGCCGCTTTCTTCTCTT 1613557 37 100.0 35 ..................................... AGCTCTGCGGCTTTCAGATAGACTGACCATGTAGG 1613629 37 100.0 34 ..................................... CACCCTTCGAACTCGGGCAATAACCTTGAAGCTA 1613700 37 100.0 35 ..................................... TATCCCCTTAGATCCCTATAGACATACATGCCCGA 1613772 37 100.0 35 ..................................... AATAATAGAAATTACATAAGTAAGTATTAGTTAAG 1613844 37 100.0 36 ..................................... TTTCCAGGGGAGCTCCGAGAAATACACCGTCTATTT 1613917 37 100.0 37 ..................................... CTCTTGAAACAGATGGAAAAGTTTTAGTTTTGCCAAC 1613991 37 100.0 36 ..................................... TAAAGAGTGGACATGTGTGCAGATGGATACCAGAGA 1614064 37 100.0 35 ..................................... TTAAAGCGTTTGTGAAGGTGAGCTAATGATTGAAA 1614136 37 100.0 33 ..................................... CCCGGAAACGGTGAGAGCATGACCGAATTAGAA 1614206 37 100.0 37 ..................................... TCGCTTTCGTTTTTTGTATCGAGTCCGTATCCGTCTT 1614280 37 100.0 35 ..................................... TTGTTTTGTGGATGCACTGTGTAGGGATAGTCCGG 1614352 37 100.0 37 ..................................... TGCTACGATTGACAGCCGGACGAGTCCACATTGCCGT 1614426 37 100.0 34 ..................................... TATTGCGGTTCAAACTCCGATGAATCTTTTTTGA 1614497 37 100.0 36 ..................................... CAATAAGGTCGCTGCTTTCCGGGCTTGTGCTGCCTC 1614570 37 100.0 37 ..................................... AATTATTGTGATAAACTTCTGCAGCTGTAGTAAAGAG 1614644 37 100.0 37 ..................................... AAAACGATGTCGCCGGGATTACATCGGACTGTATGAG 1614718 37 100.0 37 ..................................... ACATAACTTTTAGCTTCGGCTGCCGTGTCGAATTTCC 1614792 37 100.0 34 ..................................... TAATCGTCGAGTTCCGCCCACAGTTCAAACATTT 1614863 37 100.0 36 ..................................... TTTCAAGAACAGAGAAGAAGCAGAAAGCGCGACAAT 1614936 37 100.0 35 ..................................... TGCAGCCGACGAAAGCAAAAACATTTCTCTTGCAC 1615008 37 100.0 40 ..................................... ATCCTCCCGCAACTCCTTATTTCTCATGCTAGCGTTCACT 1615085 37 100.0 35 ..................................... GACATTGAAACTGACAACACAGAAGGCAATGGACT 1615157 37 100.0 35 ..................................... CTACTGATAGAATTAATTCGAATGGGACGTTCTAT 1615229 37 100.0 38 ..................................... CAGATTTGTTTTACTCTTCTAAGAGTAGGTATTGACTC 1615304 37 100.0 35 ..................................... TATGGCCTTGGCCTCGCGCAAAATTCGCCTATAGG 1615376 37 100.0 37 ..................................... CATTAAAAAAGGTAACAGCCCGAAGTATATCCAAAAA 1615450 37 100.0 36 ..................................... TCATAAAATATGCGTTTTCTTCCTCGTTTCTCCATA 1615523 37 100.0 33 ..................................... CAGACTTAAGGAATCTATTGTTTGGATGGATTA 1615593 37 100.0 37 ..................................... AGAGTGCGACTTTTAGAATACAACTTGATAAAATACT 1615667 37 100.0 38 ..................................... GTTTCAGGGAATTCATTTCTAAGAACTCTTGCAGAATT 1615742 37 100.0 38 ..................................... ACTACAAGGCGTTCCTCAAAGTAATACAATAATAAAAA 1615817 37 100.0 37 ..................................... ACGAATCCCATTAACCTGTATTCAGTCGCTTTCTTGT 1615891 37 100.0 36 ..................................... TTTTGCAAATTAAGCTCATCCCTAATCCATGCCGGA 1615964 37 100.0 34 ..................................... TAGATGTTGTCGGAGGGGACATCTACAGCAATGA 1616035 37 100.0 36 ..................................... TTTCACACTCTCCAAATAAAAAAGGGAAATCTGAAT 1616108 37 100.0 36 ..................................... TATACAACTAAAAATAATTAACAGTGATAAAAACAT 1616181 37 100.0 36 ..................................... AGGATCAGGACGACGGCAATAATACTGAAGAATCCT 1616254 37 100.0 37 ..................................... AACTCATTCCTTCTTGATGTCTGAAGCCAGCCTTCCC 1616328 37 100.0 36 ..................................... TGATCGAGATAAAGATAACTGATGAAATGCGAGAAA 1616401 37 94.6 0 ...................................GA | ========== ====== ====== ====== ===================================== ======================================== ================== 84 37 99.9 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : TCCGAAATTTAAAAATATGTCGCTCGACACGGAGAAATATGGAGAAGGCCTGACTGTTATCCGTTCAGCCCAGTGCCCATACTCAGTAAAAAACGTGGATGCTATTTTGAAAACTGCAAGGGACAAATTGAAAATAAAGGCTAACCTGATTGACCTTGAGAGTTCAGATGAGGCTCAGCATGTGCCCTGTGCTTTCGGGACCTTCTGTATTATTTATAATGGCAAGGTTATCAGTCATCATCCAATCAGTAATACAAGATTTGAAAACATTATGAAAAAAATAATTCAATAGTCAATACCAGATTTCAAAACCCGTCCACAGATTTAAAAACAAAAGTTTAATAGAAAGAAAAGCATATTTTGAGATGTTTCCAAACCACTAAAAAACCCTTTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCCGAAAAAGGGGATATTTCCCGCCTTTTCTGGCCATATAACGGAAATTTTTGCCCT # Right flank : ATAAACTGATACTTTCCCTTGTCCAGGACTGGCTCAAGAAAGGCTCACAGGCAAGCGGTTCCGGGAAAAATTCTGGAAAAGGGCTGCTTCAGGGTGGGATAATCTCTCCGCTTCTTGTAAACTTCTACCTGGACCAGTTCGATAACCACTGGGCTGAAATCGGGCTCAAGAATGTTGAAGGGGAATCAATTGAGCACCTTGTCCGTTTTGCAGATGATTTCGTGGTCCTTTCAAAGGAATGGATCAACCCTGAGAGAGTTAAGGAAGCTATGGCTGAACTTGGACTTGAATTAAACAAAGATAAGACCTATGTCGGGACTGCCGTAAATGGGTTTGAATTCGTGGGTTTTTACTTTGAGGAAATTGAAGAGGAAAACGGGGCTGGGAGCATTATAAGAGTTATGCCTACCGAAGGGTCTATTGAGAAGGTAGTCGAGAGTATTGAAAGTATTGGAAGTAATGGAGATGTATATAATATAAATAGCATAGAAAGTCAAGGA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 3 1627660-1628079 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP009509.1 Methanosarcina mazei WWM610 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================================================================================================== ================== 1627660 37 48.6 126 T..AG.TCTCTA.GAATT..G....TG.TT....... ATTCTTTTCTTACATTTTAAGCTATACCTCCCAGTTATTTTTCTATGCGACATTTTCATTATTTATAGGAATAGTTGTCCAGTTGTTATGGGAAGAAAAAACAGTTTCTGAGCCTTTTTGAAAGAT 1627823 37 62.2 36 A.A.TTTT.A..GACT.GT....G............. CAGTTGAGGGCTCAGGAAGACCGGATACTTCTCCAA 1627896 37 100.0 36 ..................................... TGATTTTCTCATTTTTTTATTTCGTACATAATTTTT 1627969 37 91.9 37 .......A....A.......................T GCAGACGAAAAACGCAAATAAGAGAACAGACAAATTC 1628043 37 56.8 0 A.TCGATAAC.AGA....T........A.....G..T | ========== ====== ====== ====== ===================================== ============================================================================================================================== ================== 5 37 71.9 59 GTCGAGAGGTAGCTTCCACTAAAACAAGGATTGAAAC # Left flank : TAAATTTTTAAAATCTAAGGGTATAGACAGAGAGAATGATCTAAAGAAAATATGTAGTTCTGAAAGTGAGTTATTTCACGCATTAGATAATGATGCAGAAACAAAACAATTTTATATCGATTTATGTATTGGCTACTTACTTAAAAGATACAATATATTTGACTCAAAAGAAATGTGGAAGAATTCGCCAAAAAAAAATCCTATAATTCGTTTACAAATAAGTTTACCACGTTTAATTGCTTCAATCCTTGTTGGGTCTATAGTAATTGCAACATCAAGTGAGATTTATAAATTTGTAAGCAGTAACCAACCATTTTTGCTTTTATTATATTCACTCGCTTTACTTGTATTATCTTATGGTTACCTAACTTTTGAGTGTCTAAAAATAACACAAGGTACTATAATAACTCAGATAGCAAAGAAAAGAGCATGTTATGTTTTAAAAATGGGCACTTCCTATTCGCTAGTCATTTCATTTGTGTTTCTAATAATTGGTTTAT # Right flank : TTCTATTTCTTCAAATTTTTCTAAAGGGGTTAACCAGAATGTCTAAGAAAATCGGCAGAAATGATCCGTGTCCATGTGGTTCAGGTAAAAAATATAAACATTGTTGTTTAGGTAAAAAAGCAGCCGATGCGAATCTAACTACTTCAAAATCTAAAACTAGTCCAAAATCTGAAGCTCCAGTCATTAACCGGTTAGCCATTATGAGGTTTGAACAGAAATTGCAGGATAATCCCGAGGAACTGGAAAAAATTGGTAAAGAACTTGAAAAATATTCCGGTGACAGGGATACGGACTTCAAAGAGTTTATTCAAAGAATGTGGAGTATTGATAAAGTAAAAAAGATGAGCACTTCAGAAATAATTGAAAAGTTACAATCAATGAATGTTGATTTCGAAATAGAACGTTTTAAAAAACAGGCTCAAAATCATATCTCTGCAATTCAATTAGCAGAAGATCATTATTATACACAGGATTTCCATGCCCCAGGTCTGGATGAAGAT # Questionable array : NO Score: 3.07 # Score Detail : 1:0, 2:3, 3:3, 4:-0.40, 5:-1.5, 6:0.25, 7:-2.59, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGAGGTAGCTTCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTGAAGTGGTACTTCCAGTAAAACAAGGATTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //