Array 1 109089-108268 **** Predicted by CRISPRDetect 2.4 *** >NZ_RKLH01000002.1 Escherichia coli strain PN29 Thai-29NODE_2_length_227558_cov_21.6534_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 109088 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 109027 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 108966 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 108905 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 108844 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 108783 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 108722 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 108661 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 108600 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 108540 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 108479 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 108418 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 108357 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 108296 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 136159-134788 **** Predicted by CRISPRDetect 2.4 *** >NZ_RKLH01000002.1 Escherichia coli strain PN29 Thai-29NODE_2_length_227558_cov_21.6534_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 136158 29 100.0 32 ............................. CCAGGGTGAGCCAGCGCCGCAGGAAGACACGC 136097 29 100.0 32 ............................. CGTTCCCAACGCTGAATATTGCTGGCATAGCC 136036 29 100.0 32 ............................. CCAATACGGAGAACCTTCATCGGTAATGGGGT 135975 29 100.0 32 ............................. GAGCGTAGAGATTCTCGAAACCGATCCGGACG 135914 29 100.0 32 ............................. GAAGTTGCGCGCACTAAGAAAAACAGGTTCGA 135853 29 100.0 32 ............................. CTGAAATCAATCGCCGGTCGTCGCCACGTTAC 135792 29 100.0 32 ............................. TCATCGAAAACCAGCGGATCGAATGGGACGCC 135731 29 100.0 32 ............................. AGACGGCGCGTAAAACTCATACGGCGACAAAT 135670 29 100.0 32 ............................. CTCGCGGGCGTGGAATTTAACGAACGGTTACC 135609 29 100.0 32 ............................. TCGGGACGCTGCGCGATCTGCATAGCAACGCA 135548 29 100.0 32 ............................. GTATTTTTGCTGACGGATTCTCAGAGAGTTTC 135487 29 100.0 32 ............................. TTTCTATCTCCCAGTGGGAGAGAGATGACAGT 135426 29 100.0 32 ............................. GTTTTGGCGATATCACCTGATGCCTGCAATCC 135365 29 100.0 32 ............................. GGGTATCGCACTGCGGCAGATGTTCCGGGGCC 135304 29 100.0 32 ............................. CATGAATATGGACGATGAAAAAATAAGAGAGG 135243 29 100.0 32 ............................. TTAAAACATTTTCCGAGCTTTGCGATTTATAT 135182 29 100.0 32 ............................. TAAAAATCATCATGGAAAATCAACCCGGCGAC 135121 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 135060 29 100.0 32 ............................. GCGATCTCGCGGAATACACCGACGAGGCGGGC 134999 29 100.0 32 ............................. TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 134938 29 93.1 32 .A.C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 134877 29 93.1 32 .A.C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 134816 29 89.7 0 .A.C........................A | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //