Array 1 11394-12835 **** Predicted by CRISPRDetect 2.4 *** >NZ_FCOQ01000002.1 Paenibacillus phocaensis strain mt24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 11394 32 100.0 35 ................................ AAAGTTGCCTCTCCGCGAATCCCCTTTTGGGTCCG 11461 32 100.0 35 ................................ GCCTTGTTGCGCCAGCAGGAGTTCCGTTACTGGCT 11528 32 100.0 37 ................................ AAAAGAAAGGGGACGGACAGCAACAAAAGTAGGTGGC 11597 32 100.0 36 ................................ CTCTTGCTCGGGCTCGATTTGGTCAGTAACCTCGAC 11665 32 100.0 34 ................................ TCTCCTAAATCTGATGAATGAACACTCTGTTAAA 11731 32 100.0 35 ................................ GTTAAATTGTCTATTTTCTAGTGTTGGGATACCAA 11798 32 100.0 35 ................................ AATTGTCCATCGGGGACGGTCTGCCAAGCAACAAA 11865 32 100.0 35 ................................ TCTTTGCCCCGGTACTCACGATCAATGAATAGACG 11932 32 100.0 34 ................................ GACTTTGCAATCAATGTATGGTGAGGGGTGAGGG 11998 32 100.0 35 ................................ ATTATGTGTGAGGTGGGTGAAATTGAAATACCGTA 12065 32 100.0 36 ................................ TTACTTGCAAGGCGCTGCTACAAGGCAGTTAAACAA 12133 32 100.0 35 ................................ TTGGGTTTACTGTGCAAAGCGTCTTACAAGGCATC 12200 32 100.0 35 ................................ AAATGTTTTAGGTTTAGAGTGTTCCCGACCGAACA 12267 32 100.0 38 ................................ GATTTTATGATAAGCTGCTAGAACGAGTTGCAGCAGGT 12337 32 100.0 35 ................................ GGATTAACTCGTTAACCTTTTCATATCCCCCTGAC 12404 32 100.0 33 ................................ GCACGACCGCCGGCAGCATCGTCGAAGTTGACG 12469 32 100.0 34 ................................ CGATGCGCTTGCGGATGTGAATCGTAAAGTTATC 12535 32 100.0 36 ................................ CAGGCCAAAGTAGCTGATGAAATATTGCCTGCCATT 12603 32 100.0 36 ................................ CCTCTTTGTCTCTAAAGCGTTCGGAAACTACTACCG 12671 32 100.0 35 ................................ AGATGTCTCAAGCGCTAGGAAGTGGGTTGCTACAA 12738 32 100.0 34 ................................ CGAACGCATTTGGGGCGATAATGCAAAGCTAGTA 12804 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ====================================== ================== 22 32 100.0 35 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : CCTTTCTTTTTCAGTATTGGGGTCAAATGAATCCCTCCATTCATGACGGTTGCCAAGTATGGTTAAATTATACTATTACAACCGGGGGGAGTACACTGAAGATAAACGTAACTCCCCAATCATCTCGGCAGGCATTTGGCTGGTTGAGATTTTTTTTCTACTTATTATGAAGCTGTTCTCCTTTTTTTGGTGGAGGATGATAAATTTTGCGATAAAATAGAACTAGGGTAAAAGCTGATCGAAATAGTTCGATCCCCTTCTTGATCTAAAGCGGGACTCCGGGTTGGATCATCGTTGATACATTTAGTGGAGCCGCTGATCTTCTAGCGGTGCGAACCCCAAGCGCACATCAAATCCCCGGGAGGTTCGCACCCCGCGTTATTAATGGGTTTGTGAAGATTTTGGTTGAAATCAAAGAAAAAAATCGCGCTCACAAAATAGGTTCGCACTTCTCGGGAGATAAGGCCTTGTGGCTCAAGGCTTCACATGGCCCGCTGTCG # Right flank : TTCGTAGACCTCTTCCAGCCATTCGGTCATCATGACTGGATTGTCAACAGTAAATCAGACAGCTTTTTTAAGGGCCTCTTGGCGGTACTGAACAGGTGTCATGTATCCCAGTGTTCCGTGAATGCGATGCTTATTAAACCAGTTGACGTAATCGTATAGTTCAATCTCCAAATGGCGAAGGCTTTGAAATTCCATCTGGTTGATGAACTCGGTTTTCAGACCTTGTAGGTGGCTTCTGCTACGGCATTGTCATAGGGACAGCCCTTCATGCTCAGAGAACGACCGATCTCAAAGGTTTCCAGAAGCTCGTCCATCTTTTCATTTTTAAATTCACTGCCACGGTCTGTATGAAACCACTGAATTTGATGCAGATCGCCCTGCACTGTGGCAAAGGCACGAGAAACCAGAGCAGCGTCCTTGTTCGGACCTGCACTATGACCGATAATCTCTCGATTGAACAAGTCAACGAGTAGACAAATGTAGTGCCACTGGTTCTGAAC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 14093-15323 **** Predicted by CRISPRDetect 2.4 *** >NZ_FCOQ01000002.1 Paenibacillus phocaensis strain mt24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 14093 32 100.0 35 ................................ AAAACTTATATCGTCGATATTCACTCCGTACAGCC 14160 32 100.0 33 ................................ AAACAGCTCGTAAAGCTCCACGGGACTTAGCTG 14225 32 100.0 34 ................................ CAAACAGGCTTGTGCAATCACCAAAGACGGTAAT 14291 32 100.0 34 ................................ AGGCTGAACTTACCGAGAAGGACGCAACCATAAC 14357 32 100.0 33 ................................ GCGAATACCTGGATGATGTTTTAATGAAAGCAG 14422 32 100.0 34 ................................ GGACAGAGGCTGTCGTGAGGGACGCCTTCGTCCT 14488 32 96.9 35 ...........C.................... TAGCATCTTCCGGTTAACCTCACGGGATAGGTTCA 14555 32 96.9 33 ...........C.................... ATCCAAGAGTCAATTTCCTTGAAAATGTAAAGG 14620 32 96.9 33 ...........C.................... TGGTCAAGCGGGTTATTCTTACGAGTACGTGGG 14685 32 96.9 34 ...........C.................... AGGTTAGCATCCATATCAAACAGTTCCTTCAAAA 14751 32 96.9 34 ...........C.................... ATTTTTTTCGTTGGCTGCCGATCCCGGTATTCGT 14817 32 96.9 36 ...........C.................... TCTGAAAGGTGGTGGTTTGTCCGATATCTGTCCGTT 14885 32 100.0 36 ................................ GTCTACAAGAACAACACAGGTACGGTCGGAGTATGC 14953 32 100.0 35 ................................ CCGGATGCTGAAGCATTTGGCCCGGGAACTGGACG 15020 32 100.0 37 ................................ CATTCGGTGGCGGGGACAGCGGCATCACCGGGATCAC 15089 32 100.0 36 ................................ AGCGCAACAGGTCGCGACGATGCTGGCGGACCGCGC 15157 32 96.9 36 ...........C.................... ATTATCCAAGATCGCGAAGCTGGAGCTGGGCAGTAG 15225 32 96.9 35 ...........C.................... AGATAGCCGGCAGCCAGTCGCGTACAGCACCTCGA 15292 32 87.5 0 .........C.CA.............A..... | ========== ====== ====== ====== ================================ ===================================== ================== 19 32 98.0 35 GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Left flank : CACAATCGCTTTAGTGATCTCGTCTTCGTTCGGTTGTTCCTTCACTTCATAGTAAAAGGTGCTTCTTGCGATTTGCAGGACGTCACACATTGCTGATACCGAGTATTTATCACAGTTGTTCTGGATGATAGCTACTTTCGTCCCATGATCAGCGCGGCTTGCTTTAAAATATCGTTCTCCATCCTCAAGCGTTGGAGTTCTTTACGCAAAGCGATGAGTTCATTTTCTTCAGGTGAACGATTGTCCTTCTCTTTGAACGAACCCGTCGTTTGAGCTTGCTTGATCCATCGGTCTAAAGCTGAAGCTGTGAGGCCGTATTCCTCCACAATCGCAGCCCGGGATTTTCCGTTTTCATAGAGTTGCACCATTTGCTTTTTAAATTCTGAGGTGAAGGTACGCCGTTGTTGTTTTGGCATTGTAGAGATCCGCTCCTTAACATAATAGGTTTATTCTACAAGCCCTTATTTTTCTTGTCCAACTAAGTGTAGCCGATCCAGACC # Right flank : TGATGATCCGCCGCGCGTAATTGGTGCAATCGAACGTGTCCGCGCGCACTCCTTGTATCCGCAGTAAGAGTTCCATCTAGCCGATGTGCCGTTCGGGGGTCCGAGAATAGGGGGGAAGAGGAATGTTAAGGGTTATGCATCGAAATCTCTGACTTTTGTTGCAAAAAGAACGAAATCATCAATATGGTGCTCAATAATCGCCTGGACAATTTCGACCTGAATGCTTCGGTAATCGTGTACAGCAATGTTGCGAAACCCAACCATAGCCTTTAGATTGCGGTTGAGCGACTCGTCAATCACTCCATTGTCCATCAGCAAATCAAAAGCATCCCGGCTGCTTTGAGGGATCCCCCATTTATTTTCCGAGACCAAATGCATGGCCAGATCGATACATGCTTCGCAGGCGCGCTGTAAATTAAGAATAATGGAATCCTGCTTGGTGTAATTTAAGAGGTTCTCCCGCTTTCCTTCATACTCTTCCTGGATCCGTTTCAGACAAC # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.86, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATGTGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTACGTGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTTAGTGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 24638-27970 **** Predicted by CRISPRDetect 2.4 *** >NZ_FCOQ01000002.1 Paenibacillus phocaensis strain mt24, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 24638 33 100.0 35 ................................. CCCAACTGCGGTTTGACTCTGAAGAAGCCGGAGAC 24706 33 100.0 33 ................................. CGGGTGATCCGAGGAGAATATTTTTGTCTCAGT 24772 33 100.0 33 ................................. AACGCGCCTTTATAAGGATTTCGTGGCTGACTG 24838 33 100.0 34 ................................. AAGTCAAATGATTACGTTGAAGCAGTTGAGCTTA 24905 33 100.0 36 ................................. GCTCTATCCAAGGGCATAAAGACGGCATATTCCAAG 24974 33 100.0 34 ................................. CCGCAGGTCCGACAACATGGGCCGCTTATCCGGG 25041 33 100.0 37 ................................. AGCGCGTGGTCGAAATCTACTTTGGTGATGGACAAGT 25111 33 100.0 34 ................................. ATCCTCCTGCAGCGTACGGCGCCCTTGCTCGCCA 25178 33 100.0 35 ................................. AACATGCGAATGATATTTACTTTTCCGCCCCCCTG 25246 33 100.0 37 ................................. TTTCATCTCACGGTACTGTTTGAGCGCCAATTCAACT 25316 33 100.0 37 ................................. ATTAAATTGAGGGCGGTTTCCCGCCCATCAGTTAAAT 25386 33 100.0 34 ................................. ACCTAAAGACAATTTCTACGACTCCTCACTAAAT 25453 33 100.0 36 ................................. AGCAAAACTTTACGCTGCCAGTGGCGATCGGCACAG 25522 33 100.0 36 ................................. ATCTCCGGGAGGTCGGTATTTTTGCCACCGATCCGG 25591 33 100.0 34 ................................. ATAGGATAGAGGGACTTCCCGCTCTTTGTCCCCT 25658 33 100.0 34 ................................. TTTGGGTTTCGCAACATTGCTGTACACGATTACC 25725 33 100.0 34 ................................. CTCGAACTATCCGACCGGACCAATAAGGCGAATG 25792 33 100.0 33 ................................. ATATAAAATGGCGTTACGAAACCAGCAGCTTTG 25858 33 97.0 35 ....................T............ AGTTAGCGCCGGAATACGAGCATCGGCCATGCCGG 25926 33 100.0 37 ................................. GATTTGCCTTCTGCTCCAGCTCCGACAGCCATTTAAA 25996 33 100.0 34 ................................. CGTGTACTGTAGACGGCATAGGCGCAGCCGAGAG 26063 33 100.0 34 ................................. ACGTGCGGCCGAACCCAGGTTAAGACCTTGAAAC 26130 33 100.0 35 ................................. CCTGCAAATCAGTTAGGGACGCTTTTTCCGCCAAC 26198 33 100.0 34 ................................. TCCCGGCGGGTTAATCGCCTTGTGCTGCATCTGG 26265 33 100.0 35 ................................. ATTAATAGTCACGAATACCGGGATCGGAAGCCAAC 26333 33 100.0 35 ................................. GATCTGCTGCTGCAGAATCTTATCTGCAATGTTAC 26401 33 100.0 35 ................................. GTCCGGTCCGTCAGGTGGGTTAGACCCTCGGCGGC 26469 33 100.0 35 ................................. AATAATTCCATGAGGTGATCAAATGACTAAAGAAT 26537 33 100.0 33 ................................. CTCGGTTTGAGAAACAAAGCGATGGTCGAGTTA 26603 33 100.0 35 ................................. CGAACTGGATTGAAGTACCTAAGACACATCAAGCG 26671 33 100.0 33 ................................. GATAAGCTTTCCGGCGTAGTCATACCAATCATG 26737 33 100.0 33 ................................. AATCTCCCGAGGGATCATTAGGATTCCCCTCCT 26803 33 97.0 34 ....................T............ TGACGAAGAGGCCGAACTGCGCATCGAGGGCGAG 26870 33 100.0 33 ................................. TCCGTAACACTCGCGGACTGCCGCGTCGATACG 26936 33 100.0 34 ................................. GCGTAGAGTGCCCGGTTAACGCCAATATGTGGCT 27003 33 100.0 35 ................................. TATAAACTCATGCCATTGGTGGTAGTCGCTATATA 27071 33 100.0 34 ................................. TACTCAAGGATGAATATGGGTTAGATAATTATGC 27138 33 100.0 35 ................................. TGGATTATTTCGGTGCCAAAGATCGACCTGTACAA 27206 33 100.0 33 ................................. AAAAAGTAGATCATAATCAAAATTTCGCAAAAG 27272 33 100.0 35 ................................. ACTCCAGAACTTTGCATAAGTTTACGAACTTCCGA 27340 33 100.0 32 ................................. GATTGAGGCTGAGTCTTAAGCCGGTTTTGCTT 27405 33 84.8 31 TCG........CA.................... TTCGTATTCCTTATAAGGCATTGCAAAAGTT T [27417] 27470 33 87.9 30 .CG........CA.................... TACCAAAAGGATAGCAAAATCAGAGGCAAT T [27482] 27534 33 90.9 31 ..G........CA.................... ATTGCTTTAGGTGTAGCACTCGCGGGTGCGT G,T [27537,27550] 27601 33 84.8 33 GAG........CA.................... CTTGAATAATCTCCATTAGCTGTTTTGCATATA C [27613] 27668 33 87.9 33 C..........CA...........T........ AACTACTCCGGCGCCGGTCTACGACCGCCTGGC G,T [27670,27683] 27736 33 100.0 33 ................................. GTCATTATATTGACGAGATAGCATTGCGAGAGA 27802 32 97.0 36 ......................-.......... ATTCCCGAGGTGAAGCTGGCAAATCTGTCGACTGAG 27870 33 97.0 35 ........................A........ CCTATCGTGCGGTTAAGCTCATGTGGTAGCCGCTT 27938 33 93.9 0 ............................A...T | ========== ====== ====== ====== ================================= ===================================== ================== 50 33 98.4 34 ATTTCGCTCTCTGTGGAGAGCGTGGATTGAAAG # Left flank : TCCGCCATTTTTGTGGAAGTAGGTGAGCCCTAATGCTTGTACTCATTACTTATGATGTTCAAACGTCAGGGGCGGGAGGTGCCGCAAGGCTGCGCAAAGTGTCCAAGGCATGTCAGAACTACGGGCAGCGGGTGCAGAATTCCGTGTTTGAATGCATTGTGGATGCGGCCCAATTTACTGCTTTGAAATTAGAGCTGGCTCAGTTAATTGATGAAGAACAAGATAGCTTGCGCTTTTATCGCTTGGGCAATAACTACAAGACCAAGGTAGAGCATATGGGCGCTAAACCCTCATTGGATTTAGAAGACCCCTTAATCTTCTAATGGCTCATGGTGCGAACCCCAAGCGCACATCAAATCCCTGGGAGGTTCGCACCCCGCGTCATTAAAGGGTTTGTCTTGATTTTGGTTGAAATCAAAGGTGAAATTTCGCTCTCGCAAAATGGGTTCGCACTTCTAGGGCTGTGAGGCCTTGTGGCTTATGGCCTCACTGGGCCCGCT # Right flank : TCGTCAACCTGTGTATGAGGATTGAGTAACTTGAGAAATTCACACGAAATCAATTCGTTCTTAAATCTCACGGTTTGTTTATTCATCTATTATTTCAAGGATTTCTCTGATATCACTAATTTTCAAAGCTTCAGCAATTTTCTCTATATGGCTAAAACTGATACTTTCCCGTTTACCATTAGCTAGCTCGCTCAGTGCGGCGTGCCTAACATCAGATAATCGGGATAACTCCCGTAATGAGATATTATGCTCTTTCGTAAGTTCCTTAATTTTTACAATAACTCGTTTAGCCATTCCAATTCACTCCAAACCGGATAGAGGTTACTTGACTATACGCAAAAGCGTAACGTATAATACGGTTATTAGTGGTACGCAAATGCGTACAATCATTTTATTTCATCGTTTTATTTAGAAAATTGGTATTGATTTGCTATTCCAATAATTGATTTGGCGAAAAGGAGGAGCCCCATGCCATCCATTCTAGACTCTATCTACTACGG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:0, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTTCGCTCTCTGTGGAGAGCGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-40] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //