Array 1 455280-456772 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPLJ01000001.1 Salmonella sp. S073_01823 NODE_1_length_635547_cov_149.375, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 455280 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 455341 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 455402 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 455463 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 455524 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 455585 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 455646 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 455707 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 455768 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 455829 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 455890 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 455951 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 456012 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 456073 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 456134 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 456195 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 456257 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 456318 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 456379 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 456440 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 456501 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 456562 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 456623 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 456684 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 456745 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 472904-474746 **** Predicted by CRISPRDetect 2.4 *** >NZ_WPLJ01000001.1 Salmonella sp. S073_01823 NODE_1_length_635547_cov_149.375, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 472904 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 472965 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 473026 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 473087 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 473148 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 473209 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 473271 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 473332 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 473393 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 473454 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 473515 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 473576 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 473637 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 473698 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 473759 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 473820 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 473881 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 473942 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 474003 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 474065 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 474168 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 474229 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 474290 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 474351 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 474412 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 474473 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 474534 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 474595 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 474656 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 474717 29 96.6 0 A............................ | A [474743] ========== ====== ====== ====== ============================= ========================================================================== ================== 30 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //