Array 1 46617-47885 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS989880.1 Coleofasciculus chthonoplastes PCC 7420 scf_1103659003789, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 46617 36 100.0 37 .................................... TTTCAATATTACCAGTATTATACTGGTATTTGATCCC 46690 36 100.0 38 .................................... GTTAGTAAGTAATATTGTGGGTTTGTTTTTGACCACTT 46764 36 100.0 36 .................................... ATAATAGACTACTATTCCACCTATTGTCTTTTTGAC 46836 36 100.0 36 .................................... TTAATGAAATTTGGCATATGCAGCTACTGCAGAATC 46908 36 100.0 41 .................................... TTTCTAGTGACAAAGATTTAGGGGGTTAAAAAAACCTGACC 46985 36 100.0 38 .................................... AAATCTTCTAGAGACATGGTTGCCTTTTAATAGGTTTG 47059 36 100.0 35 .................................... TTTGAGTAGCGTGGATTTTTTTCTTTTATTGTCAG 47130 36 100.0 41 .................................... TGAGCAACTACCCGCTCAACTTGCACGACGGGTGCTTCAGG 47207 36 100.0 31 .................................... GAAAGGGAGCAAAAGCCTCCATTCTCAGTGA 47274 36 100.0 42 .................................... TCTAACTCAGCAAGCTCGGTAGGTGTGCTATACCCTTTCCGA 47352 36 100.0 36 .................................... TGTGAGAATCAAATATGTTAAGGAACATAAACGATT 47424 36 100.0 30 .................................... CTTTCATTTCCGAAACCACGTCGTCCGTGA 47490 36 100.0 34 .................................... GAATCTTCCTCTTGCGAGGAAAATTCTTGTTCAG 47560 36 100.0 39 .................................... ACGATCGGACAAACGAACCACTGCCCAATCTTTGGCCTG 47635 36 100.0 35 .................................... GTTGAAGTACCCTTGTTTCCCGCTGCTGCTTTCTC 47706 36 100.0 36 .................................... TTAAGTGCCGTTCCCAGTTTACAGTAACACTGGCTC 47778 36 100.0 36 .................................... CTTGCCCAACTTGCAGTTTCCCAGCTATATGGGAGT 47850 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 18 36 100.0 37 CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Left flank : TTGTTGTCTGGGGTTTCCTATGAAGCTTTTTTAAGAGCGATGTAAATGGGGAACGGGGAATTATAAATTCTATTTCTTTGACTTCACACAACCCTACTTTCTGTGTTTGAATGTTTTTTGAGTTTGGAGCAGATGCGGCAGCTTTATGAAAAGGTGAAAAAGTTAGTTGAGCCAGTGGAGGATAATGTGCGATTTTACTGGATATCTGAGGAAGCGGTTTCGAGGGCGTTGGTGATTGGCTCAGAAGCACCCCAACCGCCGCCAAAGTATTATGTTATCTAGGTTTGAGGGAAATTAGGGGTGATTTTTAGTTGGTGAATCGACACCACTCGCCAAATCGCCGAAACCCTATATTTTTCGTTGAGTGGTGTCGATGCCTGACAGGGAAAGGATTTGCGGTATGGGTTGGGAGCAATTTTGGGCAGAATGCATTATAATTTCAGCAGTGGTGTCGATTGGGCGGCTGAAACCCTTACTGGGCAAGGGCTGCTAGACGAACT # Right flank : CTTCTGCCGTTGGGTCGGCAGAAACGTGGGGTATTATCCCCTACCGATTGGGACCGATTGGGTTAAATCCGATTACAGAAAGAGTGAAGACAAAGCTACTTCACTCTTTTTTAATAGTTGCCACAGGAAGCGGGGGTTTCCATCCACCCCGATAATAAAACTAGAGAAACGAGGAAACCCCAATGACTACCCTTCAACACAAGCCACCCCAGACGGCTTCAAAAATCAAAGAAACACTCTATATTTCTGGCATTCTCGCCGGAACAGCCTTTACCGCTATCTCTCAACAAGTCGCTTTAACCTCCATACCCCTCCTGGGGTTGCTCCTGATGCAGCGAACAAACCAGCATCGCCTTACCCTAGCTCAACAGCAACAGGAAAAAATAATCACTGAAGTCCAACACACCCTCAGTCCCCTCTCAACCCAAATTCAGCACCTCGAAACTCAGATTCATGAAGCTGAATCTTCCCCTAAAAACTACCTAACCAAAACTCATTTA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [41.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 50027-50642 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS989880.1 Coleofasciculus chthonoplastes PCC 7420 scf_1103659003789, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 50027 36 100.0 36 .................................... ACGAAACAGAACGAAACAGAATTATTTGTTGTTCTT 50099 36 100.0 42 .................................... TCTCCATTTCTAAATAAAATGTAACCTCAACCAAAAAACAAA 50177 36 100.0 39 .................................... ATTTGTATTTCTTGACCAACTTCGATCTTCCCAGCTATA 50252 36 100.0 36 .................................... TGTTCTTGAGGGAAAACTTGTGTAGCTCTCGGTAAA 50324 36 100.0 30 .................................... GGTAGCTGTGCTACGGTTTCCATTGTTTGA 50390 36 100.0 37 .................................... CCAATGCAGTCCCGATAAAGCCAATTGTGGCTACACC 50463 36 100.0 36 .................................... TTTTTGAGCTTTCGCCACAAAGTCTACTGCGGGTAA 50535 36 100.0 36 .................................... CATATTTTTTCGTTTTTATCGTAAACAGTAACTATA 50607 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 9 36 100.0 37 CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Left flank : GTAAAATGTTAGTAGTTGTCGTGTATGATATTCCCAATGATAAAAGGCGGACGAAGTTGTCCAATTTTCTAGAAGGATATGGGCGACGAGTTCAATTTTCTGTGTTTGAATGTTTTTTGAGTTTAGACCAGATGCGCCAGCTTTATGAAAAGGTGAAAAAGTTAGTTGAGCCAGTGGAGGATAATGTGCGATTTTACTGGATATCTGAGGAAGCGGTTTCGAGGGCGTTGGTGATTGGCTCAGAAGCACCCCAACCACCGCCAAAGTATTATGTTATCTAGGTTTGAGGGGGTTTTGAGGGGGATTAGTCAGGTGTTCATCGACACACCTCAGCAAATCGCCGAAACCCTATATTTTTCGTTGAGGTGTGTCGATGGCTTACAGGGTAAGGGTTTGAGGTATGTGTTGGAGTCAATTTTTGGGAGGATATGTTAGACTTTCTAGAGGTGTGTCGATTCGGCGGCTGAAACCCTTACGGGGCAAGGGCTGCTAGACGAACT # Right flank : CACAAAACAATCTTCGCCTTCACTCTACATTGCTAGTGTAGTATGGAAAACTGGGATAGAATTGATAAGCTGGTTATGCACTGCTGGACGGTTGCCCCATAAGATTCGCTAATCAGAGCAGTAGGTAGCTTTGTTCGTTTAGCATCTCGGTAAAGAATAGAATCCTTTCCCCTCTGTCGCTTTTGGGGTATGATTCGCATATTTCTTTACACGCTTCTTTTACGCCGAATGCTGTATATTTTTTGGTTAGCTGTCTGCATCGAATCATTACCGATCCCAGATAGTCGCGTTTTTTGGTTATGTGTTTAAGGATTAACACCCTTAAGCACGCTTTATCCCATGCGGATAGTCGTGATGCTTTCATAATCTTGTCTTATAGGTTTGTGTTCCAGCGGAGCATAATTGCCTTATCAATCGATACCCGTTACTGTTGGTTTAGTAACGGGTGTTTTAAAATCGCCGTTACTACTTCAATATTTCAGATTTCTCAGGTAGTAACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTTAAATCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 1 6447-5553 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS989866.1 Coleofasciculus chthonoplastes PCC 7420 scf_1103659003788, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 6446 37 100.0 33 ..................................... CTCATCCTTCAAGGGACGGCGCTGTTTATCCTT 6376 37 100.0 35 ..................................... TAACAACTCATCGCCCATTTTGCCGCTTGGGTCAA 6304 37 100.0 34 ..................................... GCAGTTCCTTTAGGCACCACTCGCTTTTAAGAGA 6233 37 100.0 33 ..................................... CGACACCCTGTCCAGAACAGAAACTTCACGAAC 6163 37 100.0 37 ..................................... TGGCGTGTTCAACGGAGTAATCACCGGCGCGGCTAAA 6089 37 100.0 37 ..................................... TGGATATTTTGCAGTAAGTACGGGGAGTAAATGTTTA 6015 37 100.0 34 ..................................... AGAAAATTTCTTAAGATTCAAAGACCGAGTAATC 5944 37 100.0 34 ..................................... ATATTAGACGGCGCGATCGCTAGCCCTATAACAG 5873 37 100.0 34 ..................................... GTGAATATTTGGGCGAATGGTGCGTATCTTTCCA 5802 37 100.0 34 ..................................... GATTATTTCTACTCCGCGCCAATCATCAAAAACT 5731 37 100.0 34 ..................................... TTTCAGATTTATTGATTTCAGCAATCCATGATGC 5660 37 100.0 34 ..................................... TTGAATACATTATCGGGACTACGGAAGTTGAAAC 5589 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 13 37 100.0 34 GTCGAAATCCTCTATAATCCCTATCAGGGATTGAAAC # Left flank : TGCGGATACGGAAAAAGTGCAGGTGTTTCCGGCGATGCCGACTCAGTTGGTGATGGTGGTGGATGGAAATGCGGGCTGTTATGTGTTACCTGAGGATCAGGTTCATGTGGCGCGATCGCCTTATTCGGCTAAATTTATTCGCCTGCAACCGCCTGAGTTTTTCCGGGTGTTGCGTGAGAAGTTGGGCTGGGGATTACCTCACATTGCGAAACCGACATCGGTGGAGTTACCTTAAGTCTTTGATTGTCTGATGCGACAACCAGTAGGTGTTTTTTTCGGGGAGTCAAAATTTGAGGCTGTAATCCTTATTGGGTGAGGGATACAGGCTTTTTTGCGGCTGAGGAGGTTGTCGCAATGGCTGAAATGCCTATTCAGAAAGGGTTTGAGACTTTTTTGTTGGCGGGAATTGTCAAAAGTGAGGGCTGAAATGCTATAGTTAGAGGAGGTTGTCGCAATCGAACCTTGAAAACTAAATACAGCAAGCGTTTCAGAGGTCGGCG # Right flank : GCTAGTCATCTTTATCTGTAACTCCTATCAGCGATAACCAAAACCGAATAAGCTGTCATGCATTTATAGCAATAGACATATCGATTAGGACGTTCGGCACCATTGTAGAGACGTTGCATGCAACGTCTCTACATAAATGATGTGTCCTAACAGCCATGGCGGTTGCTATAAATTGGGTATTAAGCTGTCACGCATTTAAATTGGGAATGGGTAGCGAGCAAGATGCAAAGCCTGCGGCATGGCTTCGCTTAACGCACTACAAGGATTTCGCAATTCTTGACATTATGGTTTAAATGCCGAACAGCTTAGTAGCGAGCAAGATGCAAAGCCTGCGGCATGGCTTCGCTTAACGCACTACAAGGCTTTCGCCGTTATTGATATTAAGGTTTAAATGCCGAACAGCTTATTGACTGGCTAAGACGGTGTATTTTGATGGCGGAAACTGATTCAGGCGAAGCGATTCGGGCATTTCGACGCGGGATTTAGCGAGTCAGGTGGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAATCCTCTATAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA // Array 1 8813-9796 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS989865.1 Coleofasciculus chthonoplastes PCC 7420 scf_1103659003795, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 8813 36 100.0 36 .................................... CATGGAGCAACTTGCTCCTGGTTCAGGCGGAGAAGT 8885 36 100.0 36 .................................... CCTCAAAAGGCGCAACCCCCGGGAAGGGAAAGATAA 8957 36 100.0 39 .................................... TCAGGAGTCAGCTACGGTTCCATGTCCGAAGACTTAATG 9032 36 100.0 35 .................................... CCAGAAGATTCTGGTCGTCGTGGAAGTGGAAGGTG 9103 36 100.0 40 .................................... TGTTTGTGAAGTATCAAATTTGCGACTTTATGATCCAAAC 9179 36 100.0 35 .................................... CAATGCTCAAATCAGAGCAATCCTGGAGACTTGGT 9250 36 100.0 40 .................................... CATCCATACCCACTTCCATACCCACTTCCATACCCACTGA 9326 36 100.0 35 .................................... ACCCAAGGGAATGTACGTCAAAACGGGGAGGTTCG 9397 36 100.0 35 .................................... GAGTTCAAGCTAAAATCATGTATTCGATGTATTTT 9468 36 100.0 37 .................................... ACAAAAAAACATGGGATATTAAAGCAAGATACTTAAG 9541 36 100.0 37 .................................... CGTAAAATTTGGCGGTGAATTTCGTGGAGAAAGTTTT 9614 36 100.0 36 .................................... ACCGGGTTACAACCTAACTGTAGACCCAACTGTATT 9686 36 100.0 39 .................................... TAATGCCGAAATAAAGTTTGGTGGCCAATTCCGTGGAGA 9761 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 14 36 100.0 38 GTTTCCATTCAACTTGTTTTCCCAGCGAGTGGGAAG # Left flank : GGCGAAGTTTCAAGGGGCGGTATTTGATGATTTGACGCTGGAGAGTATTGCTAGGAATCCGAGTTGGACGAAGGCTGAGTTTGATGATAATATTACCCAACGGTTGAAGGATAAGATGCAATTTCTGGGGCAGAGTTGAGACGGTAGCATTGTTGGTTAATTTCCCCAGGTTGTCCTGACGAATCCTTGACAATGCTACCTCCAGCGCGATTAGTTTCGCGGGTTTTGCTGTTTGTCCCCAGGTTGTCCTGACGACTTTAGCGTTGTGTCTATTATATCGTTGGGTGGGTTGTTTGTCGTTCGTAGTTGGGGAATTTTAGCCTTAGTTCGTAGTTGAGGAACTTTAGCCTTATATTTATTCAGTGCTGATATTAAGGTTTAAGTAGGTTGGGTGGAGGGTAGGGTGAAATTCAATAGGTTTATTTGATAGAGAAAGGTAGGGGCACGGCAATGCCGTGCCCTTTTTTTTTCTGATTTTCAGGTTACAGGGTGTGTACCCT # Right flank : GAGTTCGCTGAGGACGCCTTACGGAGACTGGGTTTCAGCGCCCGAATCGACACACCTCGCTAAAACTCTAACATATCCCGCCTAAATTGAGCCAGACACAGCCCTCAAACCCGCTCCCTGTAAGGCATCGACACACCTCAACGAAAAACATAGGGTTTCAGCGATTTGCCGAGGTGTGTCGATTGGTCGATTTCGCCGCTATCTTATTCACGTTTCAAGGTTCAGTTAATTTAGCATTTCATCGAGATTATATCATTAATTGCCAGCCAGAGAAAACCCGAACATCCCGTTATTGAACATCGAGGACAATTTATGGCTGATACCAATGGTGAATTGGAAAAACCTAACCCCCCAGCCCCCTTCCCAACCCCCCTCATTCCCCCCTGCGAGGAGGGAGGACAGAGGATGCTTCGCTTTTATTGCACGGAAGGGGGAGCATCAAAGCCCCTCCAAATAAGAAATATACAGCAGTTTACTCTGCTCTGCGGTACATTGTCGAT # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAACTTGTTTTCCCAGCGAGTGGGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [50.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 2 12030-12642 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS989865.1 Coleofasciculus chthonoplastes PCC 7420 scf_1103659003795, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 12030 36 86.1 35 T.G.TTG............................. GGTGCAATAGTCGGAGGTTTACCTCTCCCAGAAGA 12101 36 100.0 42 .................................... AGTGTGGAAATCTTTCAAAACCTCTTCCTGATTCAAAAGAAG 12179 36 100.0 35 .................................... TGTGATTTACGAAAGCCTCGAATAGTTAAGTTAAA 12250 36 100.0 30 .................................... CACAAGTAGCACAAGAAATTGCACTTCACA 12316 36 100.0 40 .................................... GCGTTGAAGAAGGCTTGGAGTTACTATTCCGTCTGATTGA 12392 36 100.0 36 .................................... TGGAGAGCAAGGGTATTTCAATGAAATTCAGGTCAT 12464 36 100.0 36 .................................... GTTTTTGCAAATTTTAGTTAGTTAGTTAGGAGGTAT 12536 36 100.0 35 .................................... AGTGTTCAATTTTTGAGGAAGAAAAGAGTAGTCTT 12607 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ========================================== ================== 9 36 98.5 36 GTTTCCATTCAACTTGTTTTCCCAGCGAGTGGGAAG # Left flank : GGTGGGGTAAATAACTGTAACTAAATCTTTGGACAGAGTTTGACATTGTTGAACACCTTGTCCCAAGCGTTGTTGTGTTATGATGACCCCCAGAGCGAAAACCAAGCTAAAAAAATTAGGGCTTGAGATCCCATAACAAAGTAGAGACGCGCCATGGCGCGTCTCTACAAAAGTAGCGCACCTGTAATAAGGCGGTTAAGAAATCCAGCAACCTTAATGGCGCTGAAAATAACGGAGTAAAGCAGCGAAGTTTCTCAAATTACGACAATTACAGTCTTTGAGTAGGGCGAGTTTCGTCCGATTTTAAGCCTGTGGACTGGGAAGGTGCCGACACCACCAGGGTAAAGCAGGAAGCAATCCGGATGATGTCTAACAATATCCAATGTTGTCTAGCTTTGTCCAAGTGTTGTAGAACGGTTGGGGTTTCTTGGGCATGGGCGACTGTCCAAGGTTGGTTTTATCCCTACATGATAATAAACCCTGGCAAGACCAGGGGTTTT # Right flank : GAGTTCGCTGAGGACGCCTTACGGAGACTGGGTTTCAGCCGCCGAATCGACACACCTCGCTAAAACTCTAACATATCCTGCCTAAATTGAGCCAGACACAGCCCTCAAACCCGCTCCCTGTAAGGCATCGACACACCTCAACGAAAAACATAGGGTTTCAGCGATTGGGCGAGGTGTGTCGATTAGTTGATTTCGCCGCTATCTTATTCACTTTTCAAGGTTCAGTTAATTTAGCGTTTGATCGAGATTATATCATTAATTGCCAGCCTGAGAAAAGCGGGTAATTTTGCTGACTTTTGGTCGGAATCTGGAAAACCTCTCTCCATCCCCCCTAACCCCCCTTTGAAAGGGGGGAATGGGGAGAGAGGCTTTGAATTCTTTCCCTTCTGTGGCAAAAAGCGAAGCATCTGCTGACTTGATTAAATCGGGCGCACGTCGGTCATCCGTGTCAACTTAATGTGAAAAACTAATGCTGGTAATATTTTAAGCTGTGTCTATCT # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATTCAACTTGTTTTCCCAGCGAGTGGGAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.41 Confidence: LOW] # Array family : NA // Array 3 22452-22124 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS989865.1 Coleofasciculus chthonoplastes PCC 7420 scf_1103659003795, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 22451 37 100.0 35 ..................................... ACACAAGTCGGCATCAGCGAGATTGCCGTAACGCA 22379 37 100.0 36 ..................................... GCAGATTACATCAAAGTGATCATTCAGGTTTGGGCT 22306 37 100.0 38 ..................................... AATTAGATGCCTAGGTCGAGTTGATTGGTTCCCTGTAG 22231 37 100.0 36 ..................................... CAGCATTTTATTGTCAAATCGGATAACGTCTCCTGG 22158 35 89.2 0 ...........................--..A.C... | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 97.8 36 GTTTCCCACTCGCTGGGAAAACAAGTTGAATGGAAAC # Left flank : CTATCCTACAGCAGGCGATTTCAGCAGAGAATTCTAATTAGCGATCGCCTGTTAGTTTTCGATGATCCATAAACTGTTCATTTTGTCAATACAGTGACTGTAGGAATTTTCCGCTTCTGGGGTGGCACAGTATCAGATGTCAACTCTGTGCTGGAGGTCACTAGAAATAACCATCGGTTAGGACACATCATTTATGTAGAGACGTTCCATGGAACGTCTCTACAATGGCGTCGAAAGTCCTAATTGATGTGTCTATTGCTATAATCAATGTCTCAGCAATTTGATACCCGTTGGCGAAATTTTGACGGCTGAAAGCGGGGGCGAAAAACCGGGTCAGCCGTCAAAATCGCTAGGATGTTGACATAGTAAGAGTTCTAGCGTTTTAAGATTTTGATTAATTGCGAGTTAGTTTCAATAAGCGGGGCTGAAATGAACCTGAAAATGTCAGCCGTCAAAATCTGCGTTAGAATGCATGGCTGTAGAGGCTTTCAAGCTTCAGG # Right flank : CGCCATAGCGGTTAGGACACATCATTTATGTAGAGACGCGCCATGGCGCGTCTCTACAATGGTGCCGAAAGTCCTAATCGATGTGTCTACTGCTATAAATAGCAACCATTCCCCTCTTGCTACTCAGTAAGAGGGGATTCAATTCATCAAAACCTTAAGGGCACAGCAATACCGTACCCCTACCTATCCACAAAAAACCGCTATTCATCCCCCTTCATCCAACCCCCCTCAAACCCTCTCCCCAGCCGGGATTCATCCCCACCCCAAAAACTCCCATTAATCCCCTTTAATTCCTAGCCTCACATCCCCAACAATTGCTAGAGTACAGTCTAGACACCTAAACCCAAAGGAAATCCGCCGTGTCTGACTACACCGCCGCCAGTTTTGCCCCCGTACAAGGCTTTATCGAAAAATCCCGCAAACTGCGAGACTTGTATGGCTCATCGCTAATCTTATCCTTTTTAAGTTCTAAACTGGTGCAAAAGGCAGAGTCTTTAGGA # Questionable array : NO Score: 2.95 # Score Detail : 1:0, 2:0, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCCACTCGCTGGGAAAACAAGTTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.10,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 60255-59922 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS989861.1 Coleofasciculus chthonoplastes PCC 7420 scf_1103659003782, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 60254 36 100.0 40 .................................... AATTTGAGGGAAGCTCCGGCACCGCGAACTTCCATGGAAC 60178 36 100.0 36 .................................... TTTGCAGCCACTCTGCTTGCACTTTTGCAATCTCCC 60106 36 100.0 39 .................................... GCTCGACTATTCTTAATCCGACCTCTGCAGCCAAATTAA 60031 36 100.0 38 .................................... CAGTATAATTCGATATATGATTGTTTGGATTATTCAGT 59957 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================== ================== 5 36 100.0 38 CTTGACAAACTCACTTCCCCGAAAGGGGATGGAAAC # Left flank : GGGATGGAAACAGAACTACACAGACTCATCGGATTCGGATTCTTGGTGTTCGCTAACCTATTGCCACAATGGGATTGAGTAAAGGGCGACCCGATCGCATTGAGTAAACAGAGTTGTTGATTTGTGCAGGCGGGTCGCCCCTACAGGAGTATTAAAGGTGATCTGCCTTCGCTCTATTTCGCTTTATAAGATGTCCTACAGGTTAAAACAAGTTGAGTAACGCTTGAGGAATTGTCAAAATAGTGGTAGAATGCCACAATTAACGCCAGAACCTAGAAAACTGCATAGCAAAATACGGTAAATTAGCGTATCTACACAGGTCACGCGATCGCTAAAACCCTCATTTTTCCGTTGAGGTGTGTCGATGGCAGTCTAGGTAAGGGTTTTGGGCGATGAAAACCGGAGATTTTTGTCAATAAGCTCTGAGTAATTGACAATGAAAAAAGGTGTGTAGATTTGGCGTCTGAAACCCGCTCCCCGTAAGGTTTCCTGAGCGAACT # Right flank : AGAACTACACAGACTCATCCGATTCGGATTCTTGGTGTTCGCTAACCTATTCCCACAATGGGATTGAGTAAAGGGCGACCCAATCCTCTGTAGGGGCGGGTTTTACTACTATCTTTTCGGTTGCACCTCGATGTGACTAAACCCGCCCATAGATCAATGTATTGGCGTCAGGGACTTTATACGCCAGAAATTAGACGCAGCTTACAGGATATTATCCAGTTCAATAAGTTAGCTTGGCAAGGGATTTTTGATCAGGGAGAGAATAGCTGATGTCACAAACCAATTGGATTCGTGTCTTAGAAGCTAATAAATTGATGCGATCGCGCCAAGAGGTGATCGCCTTTGAAACAGCGTTAGCTGAACTAGCCAAGCATCCTCAAACCGAGGATTTACCCACTTTACATCTCATTTTCGATGATCGCTGTGAACAGCCAGAGGTCATGTTTAGTCTGCTTCATTTTCTAGAATCCTTTGATTTACAGCAACAGCTTCAAGCATTT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGACAAACTCACTTCCCCGAAAGGGGATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,12] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.74 Confidence: HIGH] # Array family : NA // Array 2 119513-119908 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS989861.1 Coleofasciculus chthonoplastes PCC 7420 scf_1103659003782, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 119513 37 100.0 35 ..................................... CCCTGAAGGTCTGCTCCCTGAAGGTTAGCTTCCCG 119585 37 100.0 36 ..................................... ATCACATTATCTTGGATATCCTCAATCCGCCATTGG 119658 37 100.0 35 ..................................... TATTAAGTAAAATCAGCGAAGGTGGCAGAGGGTCT 119730 37 100.0 34 ..................................... TTAATAACTCTCCCGATCCACTTCGCCCCCTCTG 119801 37 100.0 34 ..................................... ATAAACACACTAACGCAAAGCTAGGATTACTGCG 119872 37 97.3 0 ........T............................ | ========== ====== ====== ====== ===================================== ==================================== ================== 6 37 99.5 35 GTCTAAATCCCCCTGAATCCCTATCAGGGATTGAAAC # Left flank : GACTAAACCCGCCCCGATGCAGTGAGAGAGTGGGAGATTGTGTAGGGGCGGGTTTTACAACTACCTTTTCGGTTGCATCTAGATGTGACTAAACCCGCCCCGATGCAGGTTTCTAGGCTTCCCGTGAAAAGTTAGATGGGGGAGATGGCAAGAAGGAGATAGGCTAGGATGGTTGTACCGCAACCTGATGTGTTGATAACGGAGATGGGTTTAGTGTGAAACAGGATCAGGTCGATGTTTTGGAATGAAATCCGAGAGGGGGTAGGTGTTTTTTTGGGCGAGTCTGATTTTTCGGCTGTATTCCTTGTCTCATCTGGGTTTGAGGGATTTTGCCTCAGCGTGAGGTTCTCGGAAACGCTGAAAGCATTACTGGGACTGGGTTTGAATGGGTTTGTTTTTGGATACCTCTTGTCGGCTGAAGCTGGAAATGATATATTTAATGGAGTCTCTCGGAATTGTACCTTGAAAACTAAATACAGTAAGCGTTTCAGAGGTCGGCA # Right flank : CCAAAATAAAAGCATTGGTATGGCGCAAACTTCCGGTCTAAATTCCCCTGATACCAAGTTGCGTTCTATCATGTCATTCTGAGCGAAGCGAAGAATCTGGACAGATGCTTCGCGTCATTCCGTTTCACTGCATTCTGCTCAGCATGACAGATTCTACCTTGGAGCAAGAAGGAAGCGGTATTCTAGGGTATTTTGGAAACCTATTTATATGATGGTTCCCCTTCTCCCTTGATGGGAGAAGGGGTTAGGGGATGAGGGTGAAACGCTTCCCCTGTATTAGTTTCACCTTAAGTTGACACGGGCACGGCAATGCCGTGCCCCTACAATTATTGGAATGTTGGAATTTCAGTGAATCCCGATGAGGGATTAAAATTAGCGCCGGGAATGCGATCGCGTCTGAAACCAGATAATAATTCCCATAATCAGCAGCATAAGAGAAATAGTACACTCATTAAGAACCTCAAACAAACCCTGGCGAATGGAATTTGTGAAACCCGCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAAATCCCCCTGAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.00,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 163486-163940 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS989859.1 Coleofasciculus chthonoplastes PCC 7420 scf_1103659003815, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ===================================== ================== 163486 36 100.0 29 .................................... CTGAGTGGTAGACATCTCTCGCGGTTTTT 163551 36 100.0 33 .................................... TTCGTATGCAGGATTTCTAGTTTTTCCTTGCAT 163620 36 100.0 37 .................................... AAGTGCCGTTCCCAATTTAAGGTAACGCTAGCACCCG 163693 36 100.0 35 .................................... AAGATGCCGCCCCAGACTATCAGTCGTTTTAGCTT 163764 36 100.0 35 .................................... AGCATCCGCTGGGACTAAGTGAGACCAGTGATCAT 163835 36 100.0 34 .................................... TTTACTGTCCCGTTTATTACTTTGAGTGTCCTAA 163905 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ===================================== ================== 7 36 100.0 34 CCCTACCGATTGGGTCAAATCGGATTAGTTGGAAAC # Left flank : GGGAAGCTGAACAGAGTATTAAGCAAAGTTCGGTGACGGGGCAAATTAGTCAAGTGGGAAGACTCTGGCATCGGATGTATCCGGTGGTGAAGTTGGTGGATAATCCAAAGAATCCAGGGAAGAAGACACCAAGAAGTACGCCTAATTATTTGGAACTGTTGACGATTTTTCCGGATGATTCGCGTAAGTGTGATGATTTTCTGGATTTCCTGGATACTGAACCTGAAGGGTTTCAACGGCTTTGGTGAAGTTAAAACAGCACTCGAATCCCGTCAAGGTATTGTGGGTTCTAGGTTTGAGGGCAATTTTCAGATGTTCATCGACGCATCTCGGCAAATCGCTGAAACCCTATATTTTTCGTTGAGATGCGTCGATGCCCGACAGGGAGAGGGTTTGAAGTATGTGGTTTGTTCAATTTTTGGCAGGATGCATTATAATTTCAGCAGTGGTGTCGATTCGGTCGCTGAAACCCTTACTGGGTAAGGGCTGCCAGACGAACT # Right flank : CACCAGGATATCAAGCTCCTGTTGCGCGTGGTCTAGACCCTACCGACCATCAGCAATCTAGAGCGCCAGTCCAGAAATCAAAATCGATACTACAATCTCCCAAAAACCGTAACAAAAACTACGCAATTTCCCATTTTGTAGAGACGTTCCGCCGGAACGTCTTTACTAAATGATGTGTCCTAACCGTTATGGCGGTTGCTATAGCGTTTTCATTTGAGTTGTGAACCCCACCCTGCCCTCCCCTTGCTAAGGGGAGGGTTTGGGAGGGGTAATATTTTCACGTTTCATTTGGAACTGCTATATAACTGTTGAAAGAGGGATATCTGGTTAAGCAGCAACTAGCTCATTGAGTTGCAATTCACATTTTTGGAAAACATAGTTTACAGCAGCAAATAGCTGATCCAAATCCTGAATCAGGTAGCGATTTTTATTTTGAGTAAATGAATCTTTTTCTAGCTTGCCAAATTCCCAGTCTTTCCCATTCGAGACAATACCGAAAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCGATTGGGTCAAATCGGATTAGTTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.30,-5.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 188668-189214 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS989855.1 Coleofasciculus chthonoplastes PCC 7420 scf_1103659003821, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 188668 37 100.0 37 ..................................... TCCGAATCCTCAACTGAACCCGCCCCACTTACGCCAG 188742 37 100.0 35 ..................................... ACTAAATCGCTGGTCTGGGATATTCCTACCTGGTA 188814 37 100.0 37 ..................................... GTTACGGGTGCTTTGGCTTCTGGATTACCTGTGCTTG 188888 37 100.0 36 ..................................... TGGTGGGAACTTTAACAGCTTCTATCTTCACGCCGT 188961 37 100.0 40 ..................................... TGGAACTCATCATTTTTAGCACGGCACAATCTCACACCAT 189038 37 100.0 33 ..................................... ACCCACAAAAAAGGAAATACCGTGATCTCAGAG 189108 37 100.0 33 ..................................... GGGCAGATTCAAGCCGAATACTCCGCGTGTTGA 189178 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ======================================== ================== 8 37 100.0 36 GTTTCCTTATAATGAATCCCGGCAACGGGATTGAAAC # Left flank : GAACCAGACGTTATTTTATCTGATTGTCTATGATTTGCCGGATAATAAGGCGGCGAATAAGCGGCGCAAGCGGTTGCATGATTTGCTTTGTGGGTATGGCACGCGCACGCAGTACAGTGTGTTTGAGTGTTTTCTGACAGGTGTGCAGTTTGCTAAACTCAAGGTGAGGGTTGAGAAGTTGATTAAGCCCGCAGAGGATTCAGTTCGCATTTATGTGTTGGATGCGGGTGCGGTACGGAAAACGATTACCTACGGATCAGAAAAACCTCGACAAGCGGAGACACTCATTCTATGATGTGAATAAGCTGATTTTTGACGGGACGAAGCGGGGGCGAAAAACCCGGTTTGCCGTCAAAACGCTAGGAACCTTGACAATTAAAGATTTCAGCCGTTTTTGGAAAAGGGCAAAAAAAGCAAAAAGTCCATTTCAGCTCCTGGATTCCGTCTGCCGTCAAAAGTGGCTGTGGGAGTCCCGGCTAGAAAGGGTTTCAGAGGGCGGG # Right flank : CCCTCAGTTGAATTCCGCTAGATTAGGGCACGGCATTGCCGTGCCCCTACCCCATCAATTATCCCTGATGTAGGGACACGATACTATCGTGCCTTATTATCTCAAACTGAGCGACTTAAGAGGATTCAATCTGACATGATACTATGAGTTAAGCGATCGAGGCGTTCGGAATAACTTTTCATCACATTCAAGGCAAACATTGGTGTTTCCTGAACCGCAAACAGGAATCGCTGCTGATCCAGAAATGCCAAAGTACAATCTGTTTTCGCGATCGCGCTATAGGTTCTGTCGTCTACTCCAATCAATGTTCCGGTACCAAACACCTCACCCTTGCCGATGGTTTCCACAATTTTACCATTGACAGAGATGTTGACTTCTCCATCCAATATGCCATACATATAGTTCGCTGGATCACCTTCTTGGAAAATAACCTGATCGGCAGAAAATGTCTTAGGTTCAGCCTGTTGTTGTAAGATGCTGACTGTGTTTGCGGGTTCTAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCTTATAATGAATCCCGGCAACGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.50,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : NA // Array 1 1863-2197 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS989854.1 Coleofasciculus chthonoplastes PCC 7420 scf_1103659003813, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================== ================== 1863 35 100.0 43 ................................... AAGATAGGCTCCTTGTCCGCCTATCCACACTTCTTGGGAGTCT 1941 35 100.0 40 ................................... CACAAGTACCTAATATCAATGTGGACAAGAGCCCAATTTA 2016 35 100.0 40 ................................... AATAAGATAGAGGGAATATCCCGCTATCAATACACAACAA 2091 35 100.0 37 ................................... TCTGCTTTCTCAAGACTCCAGCCTTTGCCTTCTTCTG 2163 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =========================================== ================== 5 35 100.0 40 CTTTAGACTTCTCCGGAAGTCGAATTAATGGAAAC # Left flank : TTAGTCGAAGAGTTTCGGGCGCTGTTGGTGGATTCGTTGGTGGCGTATTTGGTGAATTCTAAGATATTTGTGCTTGAAGATTTTACTCCGCCAGATGAGCGTGGGGGTGTGTATTTGTATCCTGATTCGCTAAAGAAGTTTTTGAAGCATTGGGAGGAGAAGTTACAGGCGCGGATTACTCATCCCCATACTGGCTATAAGGTGAATAACCGCCGTTGTTTGGAGTTGCAGGTGTGGGAGTATGTGGCGTGTTTGATGGGAGAACAGCAGGTTTATCGTCCAGTGCGTTGGAATAAGTGGTAAGGTTTCCGGGGGGGTCAGGCGATGGCTGAAATCCTTGATTTTTGGTAGACCCCCCCGGAGCAGGCTCTGGGTAAGGGTTTCATGGGTTGAATGGGGGTAGTTATTGAGAATTAGTTGCAGCTATTTGGGGTAGATCTTGACCCCCCCGGAAATCAGGGTGTAGAATCAGGTCAGGGTGAGGCTCCTAGGAGCCGACT # Right flank : CTTAAATTAATGGAAACTTAAATTAATGGAAACAAATGGGTAGGTAGGCAATGCCTACCCTACGGAAGCAATTTTTTAGGGCGCACGCTCCGTGCGCCCCTACAGTTTCTGGGGTTCAACCAAGTGCAATCGTTTTAATGGAATCGGTTTTAACGTCGCAATTGTATCCAGTAAATTCAGATTTTCCGTATCATATTATGTCCGGTTGAATAGTCACATTTAGGTGGAGACAAGTCAGAAGGCAGAGAGAGGGCAGAAGGGAAGGAGCAAGGTTGCAAATAAGAAGGATATTATGGTTATTTCGGCGGATATGATATCATTTGACAAATGCAGATATTAAAGGCTGAGGTTTCGGTTATCACACCAAGACAATAAGGCGATGCTTGAGGGTAAGAGATTTCCTTTTATTCGTTGAATGTTGCGGCTTTTGGACTGACTTCAAGCTGTAACTGTGAACGGTAAAAACAAACGTCAAACTCCATAAAGAAGTTGACTTATCC # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAGACTTCTCCGGAAGTCGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [40.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA // Array 2 5677-6505 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS989854.1 Coleofasciculus chthonoplastes PCC 7420 scf_1103659003813, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================== ================== 5677 35 100.0 36 ................................... CCACGTCGTCCGTGAAGGTGATTTCCGTTTCCTCTA 5748 35 100.0 34 ................................... ACTACCACTTCGGAGTCAACGTCGATATAGACGT 5817 35 100.0 42 ................................... ATCTCCATTATGATTTTGACTCAACAATGAGTCTACAATATG 5894 35 100.0 41 ................................... TATTGAGGGAGTCATCGGTTCTACTCCCACCTTATTTCTTG 5970 35 100.0 36 ................................... GTTCCCTGAGTCGGGCTAGGAATTTCCCAGCTACCG 6041 35 100.0 36 ................................... ACTGTAAACGCTCGGCTTACGGCTTTGCGTTTGCTT 6112 35 100.0 37 ................................... TCGAAAGAAATGGCAGTAATCCCATTGCCAATATCGA 6184 35 100.0 35 ................................... TTTTCCAATGCTTTCTCTAGCTCTTTTAGCATTTG 6254 35 100.0 36 ................................... GGAAATTCGAGGAAGGTTTAGGTCCTGGCAACTTGA 6325 35 100.0 39 ................................... TATTACTCCTTCAGGCTCTTCTATTGTAACCATGTAGTT 6399 35 100.0 37 ................................... TCGAGGAGGCGTTCATATTGATTGATTAAACTTTCTT 6471 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================== ================== 12 35 100.0 37 CTTTAGACTTCCCTAGAAGTCGAATTAATGGAAAC # Left flank : CCTGTAGAGGAATGGCGTTTGCTTCCTGATAATACTCATCCTTCTAGGAAACGACTTCTGTCAATTCTTAAGCGGATTTTGGAGAGTATGAGAGGAGAAAGCATGATAGGATTGGCGGAGGATCAGGTATGTTTATCGTCAGGAGAGGATGATTCGCACCCTTGGACAATTGTCCGTTTATTACCTGATGCGAGGTGCTGTACGGTAGCCCGATTCTGTAACCGTCAGGATGCGGATGATCAGGTGAGATTTTTGCAGCGCTATGTACCAGGGGCAAAGTTTGAGGTGGTGTTCGATCCACAGTAATCGGGTAGGGGTCAGGCGATCGCTGAAAGCGTTGTTTTTTCGTTGACCCCTACAAACCTGGCTCTGGGTAAGGGTTTAAGGCTTTGATCTGAGGAAGTTACTGAGAATAAGTTGCAAGTATTCGCCTCAGATCTTGACCCCTACAAAATTGGGGGTGTAGAATTGGCTCAGAGAGAGGCTCCTAGAGGGTGGCT # Right flank : CGATGTGAACGAGAGAGGGCGACCCGATCAAATTGAGTGGACAGGTGTTGTTACTTGATGCAAGCGGGTCGCCCCTACAGAGATTCCACAGGGTTTTGCCCAAATTAATCGGCGAAATCTGCCCAACAAATACATAAAAGAGACCGTAGGGGCGCACCGACGTGCGTCCTATTGCTGACGTGTGTCCAAAACGCTTGCAAATCAAAAGCGATCGCACAACTGAAAAAGCGCGATCGCATCAAAACATCGCTCTATACCTCTCTAGGTAAACCTTCTGTTATGTGGTCTTTTGGGAAATGAGACATAAGGATTTTCGTCTGTGTCACCCCATCTGGTGAGGCACGTTCGTCATTCGCATCACCAGGATTGACACTGGATTACCAGGGGTTAAACTGATAGCATGATAGCTAGTCAGGAAAGGAGGGGAAACTTGATATCCAGTCTCTAAACGGCATAGGGAACCATTGTGATCAAAATTGTCCCCTGTCATCCCCTAAGAA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAGACTTCCCTAGAAGTCGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-6.80,-6.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [46.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 3 15420-15090 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS989854.1 Coleofasciculus chthonoplastes PCC 7420 scf_1103659003813, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 15419 37 100.0 36 ..................................... ATCAACCTTTTTCTCCATAAACACGATTACAATCTG 15346 37 100.0 35 ..................................... CTTGTGGATCGCGTACCCGCCCAATCATTTGTACG 15274 37 100.0 37 ..................................... TCAGGGGTTGCGAATATCGGTTCCTCTAACGCGGGAA 15200 37 100.0 37 ..................................... AGTCGTTGTCAGCAGTCAGGCAACGGATTGCTTTGTA 15126 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 5 37 100.0 36 GTTTCCCACTCTGTTGGGAAGCTGAATTAATGGAAAC # Left flank : GTGCAATAGATTGGGTACGTAGTGAGGGCTTTAGCCCTCTACAGCTAGGCGTTAGAGAACTAAAGTTCTCACTACAAACAACGTCCTATTTTAGCTGGGTCAGTCCGCCATCGTGTGTTAGCGTAGCGTAACGCACCGTTGTCATTATATGGGGATCGCGGCGTAAGTCCTGTTTCCCGTGAAATGTCAGGTGAGGGTTGAGGGAATGATATGATGGCAGAGACGGTTCACGAAAAGCTGTGTAGCTACCCCCAACAGGTTACGGCTTTGATGAGAATAGGGTATGAGTCTAGAGCAAAATTTGACGGCTGGAAGCGGGGGCAAAAAACCGGGACTCCCGTCAAAAGTTCTGAAACTTCTGCTGTGAGAGCGTTTCAGCGTTTAGAGTTTGTTGGTAATTACAAATTATTTTCAATAAGCGGGGCTGAAATGAACCTAAAATTTTCAGCCGTCAAAATCTCTGCTAGAATGCATACCTGTAGGGGGTTTCAAACTCCGGA # Right flank : TCCAGATAGAGGGATAATGCAAAGGTGGGCAATACCCACCCTACTAAATCTCCAGTAATTAATGTAGAGACGTTCCATGGAACGTCTCTACAATGTTTTTGCCCTTACCCAAAAACAGAAATAATCCAACCCAATAGATATCCGGTCGTTGAAAATTGGTTCCCTTAATGCATACTATCTACAATATGCTGTAATTCTTCCGACAAACCTCTTTCCTCAAAGGGAAGATTCAATCGCTTAATTTCTCGGATAAAGGGGGTTTTAACCTCTTGCTGATAAGTGCTGATCACATCGGTGTAGCGGTTATCCCTCTGATTCCCCAATAAATAGCCAATCACCTCTTGGGGTTCTACCCCTAATAAATTGTGCATCAGTTGGTTCCGTAAATCAGCCTCCCGTTCCCGTTCATATTGGGCAATCCAGGTTAATAATTTCCACGTTTTTAAATCGGGTCGCAGGTTACACAACCAATAATACATTCCTGTATTACTACCGATTTT # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCCACTCTGTTGGGAAGCTGAATTAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.00,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 75658-75259 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS989853.1 Coleofasciculus chthonoplastes PCC 7420 scf_1103659003812, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 75657 37 97.3 33 A.................................... GAAGTACCGCGATCGCCTGCTGATCGTCCCACC 75587 37 100.0 37 ..................................... AATATTGTTATTGTCTATAATTAGGCGGCCAGTTGTT 75513 37 100.0 35 ..................................... CGGGACTCCCTCTATCCACCTCTACGACTGAATTA 75441 37 100.0 36 ..................................... ATCCCGCCGCAGAATTCCCCGCAACCCCAGCAGAAT 75368 37 100.0 36 ..................................... GCAGTAAAGTCAAGGATTTTCGCGGCATCCAGCCGT 75295 37 97.3 0 A.................................... | ========== ====== ====== ====== ===================================== ===================================== ================== 6 37 99.1 36 CGTGCTCAACGCCTAACGGCATCAAAGGTAATCGCAC # Left flank : GGGGTTGATTGTTCTCGTCTCGGTAACAGCGTCCACGTTTATGTTCGTAGGGAATAGTTTGTCCATCGCGGGTGCGGAGGGCGTCCACTCGACCGCGTAATCCGAGTTCTGGGCTTTCTAGGAATAAGTCTTCCCAGTCTTCATCCTCTTGTTTTTCCAGTTCGACATGGAGTCGGCGCCCTGCAAAAACGGCGGCGTCTTGGGTGTAGAGTTCTTCGACTTCTTCTAGATAGAATAGGCGCGGACAATAAGCGAGGGCGTGAAGGGCAGACACACGAATCGTGTCTTGGGTCGAATCAAGTGTTTGCATAAAAGATACCTTTGGTTAGAGTTGAACACGCCGATTGGCATCTGAGGTGGGAGTACCAGTTAAGCTGTCATGCATTTAAATTGGGCATTAGTAGCGAGCAAGATGCTCGCACTACAAGGCTTTCGCTATTATTGACATTAAGGTTTAAATGCCGAACAGCTTATCAGTTAACAGTGAACAGTTATCAGTA # Right flank : CGCGATCGCTAGACCCCTTAAATCATAATGGCTGCCAATCGATTTTGCAAGCATCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTGCTCAACGCCTAACGGCATCAAAGGTAATCGCAC # Alternate repeat : AGTGCTCAACGCCTAACGGCATCAAAGGTAATCGCAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 2 85490-86104 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS989853.1 Coleofasciculus chthonoplastes PCC 7420 scf_1103659003812, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 85490 36 100.0 36 .................................... ATCACGGCAATAACAAGGATAAGGCTGCCTTCACCT 85562 36 100.0 40 .................................... ACTCGGCTATATTCGGAAAGTTTACCGCTTGTTTTTCTTC 85638 36 100.0 35 .................................... TGATTGCCCCTTTAGCCACCTCCTCACTTAGAGCC 85709 36 100.0 34 .................................... TTTCTGATCCCAACAATGGGGCATGGTGCTTGCT 85779 36 100.0 37 .................................... CCGACACTAAACGAAAAAGTGACGTTTTATGCAAAAG 85852 36 100.0 37 .................................... GCAAGATTAACGGACTCCAGAACTGGTTAAACCAAGC 85925 36 100.0 37 .................................... AACGGAAAACTGCAAGACAGACAGATAGGACTTGACC 85998 36 100.0 35 .................................... AAGTGCGATCGCCCGACAGTCGGCGACATTGGTTA 86069 36 97.2 0 ................................A... | ========== ====== ====== ====== ==================================== ======================================== ================== 9 36 99.7 36 GTGCGATTACCTTTGATGCCGTAAGGCGTTGAGCAC # Left flank : GTTAAGTTTGGGTGAAAGTCGGGATTTAGTCAATGGGATTAATTTGTTACCGGAAGACTATCGGGGTGAATCACTACGCTGGTTAGTGCAACAGGAGGATGGACTATTAACGTTACCCTATTGGGTGGATCATGTTGGTTCAAAAGGAACCCGTTGGCAACGATTTCAGTTACTTCCTCCGAGTGAATGGGGTCAACCCCCTGACAATGCGTGGACAGAAATTCGGGTAGAGTAATTTACAAGCATCTGTGTCTGTTGAGGTTTGGAAGGCTGGGGAATAGGGTGCAAATCCATACAGGGCTTGGGTTTGCGGCTCTTTTAAGGGAGAGGGAGATGCTTGCAAAATGCCGGGATTCCTTTCAGGATAAGGGTTACAGCGTTTTGATTTTTGGCAAAATTAGCCAAATTTGAGTCAATTTTGGCGTGAGGAGAGTGGAGTTGGGGAGATGCTTGCAAAACCGATTGGCAGCCATTATGATTTAAGGGTTCCCGCGATCGCG # Right flank : CTTGGTTATTCGAGAAAGTTCCCCTTCTCCCGTGCAACAAAAGCGAAGCATCCTCTGTCCTCCCCCCTGCAAAAAAAGCGAAGCATCATCTGTCCTCCCCCCTCTTGTAGGGGGGAACGAGGGGGGTAGGGGGGAACGAGGGGGGTCGGGAGAAGGGGTTAGGGGATGAGGGTGAAATGCTTGCCAGTCGTGCTTTTCAGCTTAAGTTGACACCAATAACAGATGTGCGCCCTTCTCCAAAGTACGATCTAATTTAAATAAACAATCAAGCGGACATGATATAAGTCAGATTACTCTTCCAGAACCCTCCGCCTACGTTCCCAGGAATCAACCGACAAACTTGACATACATTCATTCACCTCAATTCCCCATAATCCTCCATTCTCTTGCTTTAAGTTCCGCTAATTTCTCCAACAAACTTTCAGCTAAATCAAATAACTTAAACTCATCTTCCTCATCCCCAGAATCGCGGGTCATCTCTCCAACCGTAACCCCACCTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCGATTACCTTTGATGCCGTAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 36291-36767 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS989851.1 Coleofasciculus chthonoplastes PCC 7420 scf_1103659003793, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================= ================== 36291 37 100.0 33 ..................................... TCAACCCCTTTTGCCCGGATGCAACCAATAATC 36361 37 100.0 41 ..................................... GAATTTCCGCTCTACAGGTGATCGATGTTGTTAAGGAGCAG 36439 37 100.0 35 ..................................... GGCTTATTTGTGCTCCAGGAGGCGATAAATGCCGA 36511 37 100.0 34 ..................................... ATCAGGCTGGTCCGGGATGAACTCAACGGAGAAG 36582 37 100.0 41 ..................................... TTTTCCCCCGATATCCAAACTTACTGATTAGCATCCAGCAA 36660 37 100.0 34 ..................................... CAGATCCTTAGGCTTTCGCCATTGTGCCTAAGAT 36731 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================= ================== 7 37 100.0 36 GTCGAAATCCTCTATAATCCCTATCAGGGATTGAAAC # Left flank : AACTCAAGCCCAGTAATGATGAGGACTGAAATGATGAGTTTTGTCCACTCCACTGCAACCTTCCCAGAACTAGAGATTGTCTCCACACTGGGGAGACAATTTCAACCAAGACCAAGCCAGTTAAATATTTTAATCTGCTTGTCACCCCTTCAGCCCTGAGCGACCAATACTTTGAGTAGCATTGACTTCCCCAGCTTCCTCAGCTCCCCCTTACTACAAGACTTATTCAGCAGTCCCTATTGATGGATTGGTGCGACAACCAGTAGGTGTTTTTTCAGAGGAGTCACAATTTGAGGTTGTATCCTTTATCCAGTCAGGGTTTACCGCCTCTTTTGGATTTAAGGGGTTGTCGCAATAGCTGAAAGGCTTATTCAGAAAGGATTTGAGGCTTTTTTGTTGGCGGGGGTTGTCAAAACTGAGGGCTGAAATGCTATAGTTAAACGAGGTTGTCGCAATCGAACATTGAAAACCCAATACAGCAAGCGTTTCAGAGGTCGGCA # Right flank : CAAAACGTTATACGGGCTTGGTAACCAAGCCCCTACGCTAGGAATTTCCCTGAATCTCTTCTATCAGGGAGAATTCTACGGCTCCCCCAACTCCCTACCCTTACAGATATTAACTTCCGCTTAACATGGTGCCTAATCGTCCCGGAAGAGGGTGATTTCCCGTCCCCGAATCGTGATGGCGCAGCAGTTTTAACAAAGGTTCTGGTATAGTTGCACTCAGACTAATTTGTAATTGAGGACCCGACAGAGCAAGGCGAATTAGCGTTTCTTTTTGAATCTCTAATTCTGTAATCGGTTGACCGTCCTTATACGTCCCATTGTTACCAAAGTTAATCAATTTCCATCGGTTCCCCATACGCCGCAATTCCAGATGGTAACGCGAGACAACCGAACTTCGCAGCACAATATGGTTATCTGCACAGCGCCCTATTTTAATAATCGGTTGATCAGTAAAATGCCATTGTTGAATCGGTACACTATGAGATGGGGATCGCAGTGAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAATCCTCTATAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 93791-94261 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS989849.1 Coleofasciculus chthonoplastes PCC 7420 scf_1103659003781, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 93791 36 100.0 37 .................................... CTTCGAGTTCCCTGAGTCGGGCCTGATAATGCTCAAC 93864 36 100.0 34 .................................... TTGTTTTCCATTGACGCTGCCACTTGTAGCAGGG 93934 36 100.0 34 .................................... TTTACTTCTCCCACTATTTCTCCGCAGGAGAAGT 94004 36 100.0 37 .................................... GTCAAATAAACCGTGTATATTTTGCATGGTACTTCTG 94077 36 100.0 37 .................................... TTTATACAAGTCTTTGTTTTTTAAAGACATGTCCATA 94150 36 100.0 38 .................................... TGGGCGCACACCGTGCGCCCTTACACCGGAAATCTATA 94224 36 86.1 0 G...C......T.........G.............T | GG [94247] ========== ====== ====== ====== ==================================== ====================================== ================== 7 36 98.0 36 CTTTACAAACACACTTCCCCGCAAGGGGACGGAAAC # Left flank : ACGCCCAGAGGCGATAGAGGCGGGAACCGCGAAGTTGGTGGGAACGAATCCGAGTCAAGTTGTCGCTGTAGCCAGTGAATTACTCGGAGAGGTTAAGGCGTATCAGGTGATGGCTACCGCCGTTAATCCTTTTGGGGATGGGTACGCCGCTGAACGGATTTTGCAAGTTGTTAAAGGGTATTTGCTCAAGGGGTGACAATTGGGGATGGCGTTTTCGGGGGTTTTTGTGTATATTGATTAGAGTTAGAACCTTGACAATTATATAAGGTCGGAATTCTGTCAATCTGACAAATCGACACCAGTCAGCAAATCGCTGAAACTCTAGAGTTTCCGTTAAGTGGTGTCGATGCCTAACTGGGAGAGGGTTTGAACGATTGGTTTTGCTCAATTTTTGGCAGGATCAGGTGGGATTTTATGGGTGGTGTCGATTTGGCGGACTTCGGCGTGAGCGCTCAGTCGAACGCTGAAACCCAGTCCCTGTATGGTTTCCTGAGCGAACT # Right flank : TAAGAGAAAAATTAATATGCCATAGTAGCGTGGCACAGCTTATTTGATGAATTAACCATTAGCCGCGAAACCGTAGGGGCGCAAAGACTTGCGCCCAATTCAATGGTAAAATCTATTCCACAATTTTAGTAGCAAAGGTGCGTTACGCTACTGGCGTGGCACAGCTAAAATGGTGCAATAGATTTGCTTCGTAGTGAGGGAACCTTAGCCCTCTCCAGCTATGCGTTAAAGCACGCTTCGTGCTTACTACAAACAAAGCCCTATTTTAAGTGGGTCAAGCCACTACGAATAGAGGCTTTGCGTAAGTCCTGTCACAATAACCAGGTTTTCTTCGCAAAATCAGCCGGTCTTTCACTTTCCTTTTGAATCGGTCGTCCGATAGGGCGGGTGGGAGTTCTAGCGGGAGGACGTTTGGTTTCCACGGGTGGCGCGGGTTCTATCGGTCGCTTTTGAGTGGCTTTAAGCGATTCATTCTCTTGTTTAAGACTCTCCGCTTCTTG # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTACAAACACACTTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [12,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.15,0.27 Confidence: MEDIUM] # Array family : NA // Array 1 8646-9259 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS989844.1 Coleofasciculus chthonoplastes PCC 7420 scf_1103659003791, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 8646 37 100.0 35 ..................................... TATATTGATTCGAGCGGGAGCATGAATAACGATAG 8718 37 100.0 33 ..................................... ATCGTGTAGCTAACCGCCCAAAGGATGTCCCTT 8788 37 100.0 38 ..................................... AGTAACGCTCATGAAATCAGTGGGTTCACCGTTTTCCC 8863 37 100.0 35 ..................................... ATGCAACTTACCCGACCCCAACCTAAGCGGTAGGC 8935 37 100.0 35 ..................................... ACTGGAGAGAATCTGCGATCGCGAGTCCACCGAAT 9007 37 100.0 34 ..................................... GGCGCTAACTCCGGGTATTCAACGACTTGCCCAA 9078 37 100.0 36 ..................................... TTGGGGATTCGCGCTATCCCTGCAACACAATTATAC 9151 37 100.0 35 ..................................... AGTATACAACCCTCGATAGTGTGCTTTTTTATACA 9223 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 9 37 100.0 35 GTCGAAATCCTCTATAATCCCTATCAGGGATTGAAAC # Left flank : ACGTGGTGCATTCTTCCTAAAGGTAGACGCTAATAAAACTAGCCAGATATGCCCTAAATGTTTAACAGAAACGGGTAAAAAGTTACTATCTAATCGCGTCCCAGTATGCCAAGTTGCGATCGCGTTTGAATAAGGTGATTAAACCAGACCAGGATAGCATTCGTTTCTATTTCCTCTGTGGCTGTTGTCAAGGGAAGGTTGAACGCATCGGCGGGGAACCCATCAGGGATAATTCGATTTTCTTTGTCTGATGCGACAACCAGTAGGTGTTTTTTTTGAGGAGTCAAAATTTGAGGCTGTAATCCTTATTGGGTAAGGGATACAGCCTTTTTCACGGCTGAGGAGGTTGTCGCAAAGGCTGAAAGGCTTATTCAGAAAGGATTTGAGACTTTTTTGTTGGCGGGGGTTGTCAAAACCGACGGCTGAAATGCTATAGTTAGAGGAGGTTGTCGCAATCGAACCTTGAAAACTAAATACAGCAAGCGTTTCAGAGGTCGGCA # Right flank : CTATGCCCCATAGCCTAATTCTCAACCTACTTCCCCAATCGCCAATTCCGCCACAGTTTCTCAGTGGACGCCATTTACACGCCCTATTTCTTAACCTAGTTAGTTCTGTCGATAGAAACCTAAGCGATTATCTCCATGAAGCTAAATCCGATAAAGCCTTTACCCTGAGTCCCCTACAAATTCAGCATCGCAGTCATTCAGCATCCGCTAATCTGTACTGGCAACATCATCAACCAATTCCCCCAGGAACTCCCTGTTGGTGGCGAATTTCCCTACTCGATGATACCTTATTCAGCCAATTAACCCACCTGTGGTTAAACCTGAATCCCGAACACCCCTGGCATTTAGGTCCAGCCAACTTGCAGATTACCAGTATTCTAGGAACACCCCAAAAAGGGATGCCTGGATGTTGGGCAAATGCTCTGAGTTATCAACAATTATATGACCAAGCCTCGACGCGCGATCGCACTCTGAATTTCGCCTTCTCTACCCCCACCGCA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAAATCCTCTATAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : NA // Array 1 56391-55702 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS989841.1 Coleofasciculus chthonoplastes PCC 7420 scf_1103659003829, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 56390 37 100.0 39 ..................................... CCACGCAAATCTTTGCCAGCGAGGAACTGACCAATGAAC 56314 37 100.0 33 ..................................... GTCCGAATTCATAAGCTAGTAACTCACTGCTTT 56244 37 100.0 34 ..................................... TACTCGTATTCGCTTTCAGCCATGCAATAGCTTC 56173 37 100.0 34 ..................................... GCTCCAATTGTTTCAGATCTAGAGCAATATTTTG 56102 37 100.0 42 ..................................... CGTCTGATCGCAACAACCCCGCCCTTGAAAGCATTTTTTCGA 56023 37 100.0 35 ..................................... TTCCATTTTTGTAAACAGGCGTAAATGATACTAGG 55951 37 100.0 35 ..................................... TACTAAAGTTCCAGCAAACCCTGGGGAAATGTGTT 55879 37 100.0 33 ..................................... TATTGGGTGTCCTCCGGGTACTTGGGATTTTAG 55809 37 97.3 33 .......................C............. TTCAAAGCTGATTACAATAGGCTATTGATGCAA 55739 37 83.8 0 GC.........TT.T........C............. | A [55726] ========== ====== ====== ====== ===================================== ========================================== ================== 10 37 98.1 35 CTTGGAATTCCCCTGAATCCCTATCAGGGATTGAAAC # Left flank : TTACTGGGGGTTTACCTTGCCAATCGGGAAACTGCGCCATGCGATCGGCTAATTGTCCGGCTTGGGCTGGATTTGTCCAAAAGCAGTAGACTAAAATTAAGCCTAATCCTATGAGTCTGGGGATAATTGCCACAACTAAGTTGATCGTTGCTTGCTTGGTGTCGGTGAATAAGAAAGAGCGCGATCGCACTCACAGTAGGATACCTCGCCAGTGAACTTCTGCCCAATCATGCCAATTTCTCGGTTAGATGCGACAACCTGTAGGTGTTTTTTCAGGCGAGTCCAAAATTGAGGCTGTATCCCTCATCCTGTCAGGGTTTGCCGCCTCTTTTGCTGGCAAGGAGGTTGTCGCAATGGCTGAAAAGCTTATGGAGAGAGGATTTGAGTCTAATTTGTTTAAGGGGTCTTGTCAAAGGCGATGGCTGAAATGCTATAGTTATACCAGGTTGTCGCGATCGTACCTTGAAAACCAAATACAGTATAGGTTCTGAGAGGCTGCA # Right flank : TTGGCGGCGGGTGTAAGTGTCGAACGGAACGAACCCTGGAATTCCTTTTGCTTCTTGCTCCCCTCTCCCCAGGGTGGGAGAGGGGCTGGGGGTGAGGGGTTTCTAGCTTAATTTGACACGGATTGGCAATGCCGTACCCCTACAAATACCCTTAACCTCATACATCAATCAAGTGAACAATTCCCTATCGCCTCAATTCAGATCAACAAAGCATTGAAAAGATAGCCAACGCCAATAATTCCCATCGTCATCAACGCAATAAAGACAGCCAATAACTCAGGCTGCAACACCTTCCGAAGAATCACCATTTCCGGCAACGATAACGCCGTAACCGCCATCGTAAACGATAGAACCGTCCCCAAAGGCAACCCTTTATTCACCAACGCCTCAGTAATCGGTAAAACCCCAGCAATATTAGCATAAAGCGGCACTCCCATCACCACCGCGATCGGCACCGCTAACGGATTTCCCGCCCCCGCCCACTGGGTAATAATATCGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:0, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTGGAATTCCCCTGAATCCCTATCAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.90,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA //