Array 1 121029-120734 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSTM01000006.1 Parvibacter caecicola strain NM48_B13 6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================================== ================== 121028 28 100.0 34 ............................ AGCCTCCTGCCGTGCGGCGTTGCGCCTACCCCTC 120966 28 96.4 54 ...........A................ GAGTGCCGGCTGCGGGGCGCTTGTCCTGCGGAAAGCGCGCGGGTCGCTTGCGTT 120884 28 100.0 33 ............................ GAGTGCCTGCGGGAGCCCGCCGAGCGCGCCCCC 120823 28 89.3 34 .........A........T......T.. AGCTGCGCGTTGCTTTGTCTCGCCCGTTGCCTTC 120761 28 96.4 0 ..................T......... | ========== ====== ====== ====== ============================ ====================================================== ================== 5 28 96.4 39 TGCCCGGATTACCCCGCTAGTCCGGGCA # Left flank : GCCCGCCGGGGACGAGTAGCCCGCATCTGCCCGATGCCGAGAGGGCGGCCGGCCCGAAGCGCTCGACGGCTGGCCGCCCCTCTGAGGGCTGACAGGGGACGGGGATAATGTCAGGCTCCCGCCCGCCCCTCCGATGGGTGTCAGGGGGACGTTCGCTTTTGACACGCGAAGAAGCGCTGCCGGGCCGATGGCCAGCAACGTGCGTCAAAAGTGAACGTCCCCCTGGCACGGGAAAGTGGACGTCACCCTGACACCCCCTGACACGGGGAGGGGTCCCCGAAACCCGACGTTGTCCTCGCCCCCTGTCATGCGGCGGCCCGCCCCTCCGGCCCGCCGCCCGGGCAGAGATAGAATCTCTGCCCTACGAACGGCCGTGTCGATGCGCTCGGCGCGCAACAGCCTCCCTTCCCATGCGGCGCCCCCGCCATCTCCGGCGGGGGCGCCCTTGCGTCCGGCCCCCTTCCCGCCCCTGGCCGACGCCCGGCTGTGCCCTCCGTCTC # Right flank : CCGTGGCGGAAATAGGCGCCTATTTCCGCCACAGCTCAGGTTTGGAGGAGGTTTCGCGGGGCCCGTGGCAGGAATAGGCGCCTAGTTCTGCCAAAGCCGCGGAGTTGGAAGGGCCGTTGCGCCTTGCTGGCAGGAATAGGCCCCTATTTCTGCCACAGCGACGGCTGGGAGCGTCCTGGGCGGCTCTGTTGGCAGGAATAGGACCCTAGTTCTGCCATGGCTGGGGATTTGGGAGGGCTTTGCCGCCTTGCTGGCAGGAATAGGCGCCTATTTCTGCCATGGGGGCGGTGAGAGTGGACTGGCGGGGAGGGGCTGTCGGCTGCGGCCGGTGCGGGGCTTTTGGGTTGGGCTGGCCCGTGCGGCCGGTGCGGGGCTTTTGGGTTGGGGCTGGCCTGTGCGGCTGGTGCGGAGGGGGGGGGCGCCTGCGCGGGGCTTCCAGGCTGTTGTGTGGGCGGTGTGTGGCGGCGGTGAAGACTGGGTGAATGCTGAAGTTTTGCTGT # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.19, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGCCCGGATTACCCCGCTAGTCCGGGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.60,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [38.3-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,0.78 Confidence: LOW] # Array family : NA // Array 1 518487-518215 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSTM01000001.1 Parvibacter caecicola strain NM48_B13 1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================ ================== 518486 32 87.5 27 ............A........T..A..C.... CTTGAGGTAGTACCAGTTTTTACCGAC A [518456] 518426 32 100.0 28 ................................ ATTTGAAGTAGTACCATGCCCCACCGAT 518366 32 84.4 28 T.T..T...A.................G.... AGTCGAGATGGTACCACTTTCCACCCAG 518306 32 75.0 28 ..C..T.........T.....AA....G..TT GGTTGAGGTAGTACCAGTTTTTGCCTAC 518246 32 96.9 0 .........A...................... | ========== ====== ====== ====== ================================ ============================ ================== 5 32 88.8 28 CTGCTGCCAGCCGGTGGCCATGGCGCCAGAGG # Left flank : ACAAGTTTGTTTACTTTGTCATACTCGCTCATGCTCGCATTTAGGTTCTCTTTAATCCACCGGGCGCGCCAATCGTCATACTCATCGCCTATTATGGCGGTTATCGTCATGTTGCTGCGCACATTGGAAAAGCTTCGATCCCAGCCTTTGAGATAGTAGCCTGTATTCAATTCGACGGTAGGCGCTGTAGCGCTTCCGCCGGATTTCACAATCTGAGTAGAAAGGGTGTTTGACGAATACATGATAAAGCCGCCACCTGAACTGATGGGTTTGAGATAGGAGGACTTGCTCACCTTGAAAACAACCCGGTATGAGGTCGCTTGGTTAGAAGAAGAGCTACCATTTGCGCCTGGTACCCATGCGCCGTCGGGGCCAACCCAGTAGTTTCCGACCCACTGGTTTGTCACCATGCGGCCAGAGGCATTTACATAGTAGTTCCCCACCCATTTACTGGAATCCATGGCACCAGAGCTTGTCAAGTGATACCAGGAACCGTTCAC # Right flank : GCTTGAGGTAGTACCATTTATTTCCCGCTTTGTGCCAACCGGTCTTCATCCAGCCGGCGTCATCGAACAAGTACCATGAGCCAGATATCGCTGCCCATTCCGCTTTGGCGTAGCCTCCGTTGTCGTAGGAGTACCACCACCTTCCCCCCGATTGCTGCCATTTGCCCGCTTGCGCAGCATGGGCGGGCTGAGGGTCGATGGCGGATTGCGCCATCGCAACGCCTGTTCCTAGAACGAGGACAAGCGCCGCAGCGAGAGCCAGACGGAGCAAGCCTCCCGAATCTCTTTTCTCTTTCTGTAGGGATTTCCGTATTCCCACCTATGCCTGTGCCCGAATTTCGCCCATGCGGGCACGGGCCGTCTCCGTTTCCTGCCATAAGGGGTAGCCTTCCCGAATCGTCATAGCCGAGCGTTTGCGGACTACCCCTTCAGCCCCTAATGCCCCTGCCGTCATGTGGCTGCTGGCCATAAAAGTGGGAGGGGGCGGGGCAAGGGGCAAA # Questionable array : NO Score: 3.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.44, 5:-1.5, 6:0.25, 7:-0.02, 8:0.6, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTGCCAGCCGGTGGCCATGGCGCCAGAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTGCCAGCCGGTGAGCATGGCGCCGGAGG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.10,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 357889-357189 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSTM01000003.1 Parvibacter caecicola strain NM48_B13 3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================================================================================================================================================== ================== 357888 36 88.9 163 T.........A...............A....T.... AAGGGGCCCGCTACTGCGGGTACCCGCAAGGTAAAGCCCCCACTGGGGGCTTCCTTTTTCCTCAAAAACGGGCTCAAGTCAAGGAAACAGAGCAGATTATTTGCTTTTCTCGACATACCGCCATGAAAAAACGCCTGTTTTACAGGCGTTTTTTCATGGCGGT ATT [357859] 357686 36 100.0 30 .................................... GGCAGGTGTCGTCATAGTTGGAAATAGACG 357620 36 100.0 30 .................................... TTCGACAAAAAGCTGATGAGCAGCGCCTAC 357554 36 100.0 30 .................................... TTCGATAAAAAACTGATGGGCAGTGCCTAC 357488 36 100.0 30 .................................... TTAGCCGATTGCGAATGCGAGTTGGCTATC 357422 36 100.0 30 .................................... ACACTCAAGCCCAGAACCTTGGCGAATTTC 357356 36 100.0 30 .................................... GCGGTAGTCCGCTTATAATCCTCGCCATAC 357290 36 100.0 30 .................................... TCTGATAGGTCGGCGCCATCTACGGCGTGG 357224 36 97.2 0 .................................T.. | ========== ====== ====== ====== ==================================== =================================================================================================================================================================== ================== 9 36 98.5 47 ATTATACCAACTGGGGATTTGGATGGGCGCCAAGAC # Left flank : CCCCGTCGTATCCCCCGAGCGCACCTCTTTCGCGAGCGTTAAGAGAGAGTCAACCCCATCAAGGCCAAGCATCGATAAGCATAGCGCCTGGTTTTCTATTTTTCTTTTTATTATCAACTGCCACAACCGCTTCGAAAGCGGCTTGGAAATCAATAGCTGATCTTCAACGATTGCTGCGTGGCGAGAATGTGCGCCCAGCGGCAACTGCAACGCAATAGGCATGTGGTTTCTCCCGCAAACAATAACCCCAATCCCCTCCGATCCCAAAGCGGCAAGGAGCGCTGTCGAAATCACAACTTCGTGGCTCTCCAGGATAAGGACCCATATATCTTCGAGGGGTATTCTCGCTGTCGCTTCTTTACCGTCAATCACGAGATGGTTGTCCTTGTACTTTAGCTTTGCAGCACTCTGAAGACAGACCGTTCTTTTGGGCACAGTCGTCCACACCCCTTCCCATCAGGACATTCTTACGGTAGAATACTATTGTCTGGGTAGGAATT # Right flank : GGAAACGCGTCACGGCTTAAACACCTTGCGCAGCTCTTGCGCTTTTCGCTTGAATATCGGGGCGAAGAGGGCAATCTCCTTATCCGGGCAGCCGTTCCTTCTGGCAAGCGCCTCCCATCCCGCCAAGCCGGAAAGCACGGCGGACACCTCTTTGGCCGCAACTTCGGCTCCCATTCCCGTGCAGTCCGCCAGCCCTTTCAGCGCCTCCGCTTCATTTGCCCGCGCTCCTCCGAAAATCGCCGTTGCCCGTTCGGCGCCCTCGTAAGGATTGGGGTTGATATCGAACGCAGGTGACAACGCCCACCCATTCGCAGTTTTCAAGAAAGCCAAGTTCCTCAGATGGTCGTCGGTATTCGATATTGCAACAGACAGGGCGATGCGCCTGAAAAAACGCCGAGCCTCAAGGCTGGGGTTGCGCACAAAAACGGGCAGAGCCTCCAATAGCTCCAGATAGTCGCGGCGCTCTCCATCCGACGACCCCAAAGCAGTCATGGCGCTCA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTATACCAACTGGGGATTTGGATGGGCGCCAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,10] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA //