Array 1 120413-119588 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH791835.1 Bacillus cereus VD169 supercont1.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 120412 32 100.0 34 ................................ CCTCATTCCGCCAAGCGCTCCTTTCTGATGAATT 120346 32 100.0 34 ................................ TTATCTTGATAGTATTGTGAACAATTCAAGGCGA 120280 32 100.0 33 ................................ TTGATACGAGCCGATATAACAGGCTGACAACTT 120215 32 100.0 34 ................................ GCATTGATTATGAATTAAAGTCTGATAACGATCC 120149 32 100.0 34 ................................ AGGTGTGAAGGCTATAAGTGTCCCTATAAATCTA 120083 32 100.0 33 ................................ GTCATGATTGTTATTGCCATTTCGGCAGTTTGT 120018 32 100.0 34 ................................ AAACTATAATCAGTACCGATAATAGGTAAACCAC 119952 32 100.0 34 ................................ ACACTTGGTAAGATTTTAGGAGTTGTAAGGTAAT 119886 32 100.0 35 ................................ ATCAACGACGCCCAACGTATACAAAAAGAAACAGG 119819 32 100.0 35 ................................ GATAAGATTCAAAAGTAAACAGCAGGTGAACAAAG 119752 32 100.0 35 ................................ TTAGATTATTTCAATGCAAAAATAGAAGTAAACAA 119685 32 93.8 34 ...................T...A........ ATTAGACGAGATATATCCACAGAAGAAGAATTAC 119619 32 87.5 0 .......T............C.AA........ | ========== ====== ====== ====== ================================ =================================== ================== 13 32 98.6 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : AGATGAATATCCACCATTTTTATGGAAGTAGGTGTAACAGTTGCTAGTATTAATAACATATGATGTAAGCACAACTAACAGTGTTGGACAAAAAAGACTGCGAAAAGTTTCGAAAATATGTCAAAATTATGGTCAACGAGTCCAAAATTCAGTGTTTGAATGTGTTGTGGATGCAACTCAATTTGCTACTTTAAAGATGGAATTAATTAAAATTATTAACGAAGATGAGGATAGTCTTAGATTTTATCAGTTAGGTAATAACTATAAAAATAGGGTTGAACATATCGGTATAAAGGAATCCGTTGATTTAGAAAGTCCTTTGATTTTTTAGGTGCGAATGTATAGCACACATAAAATTCCTCGTGCATTCGCACCTGAATTTTCATAATTTATGAGCGAAGTTTAATATTTTTTATACAAATTCTCTTATTAAATAAAGAAATATGTATATTTTTGAACAGAATTAGTGTATTTTTGTATGGTTTTAAACAAAAATCGCT # Right flank : GAAATTACTTGCTGCCTTATCTAGATTACTTTCTTCGCATCTCAGGTGTGTGGAGTAAGACTGATAAAATAATTGATAGTAATTTAGTGCCTCTGTTGGAGAAAGGGGACCTGTTTCAATTCATAAAGCAACGAGTGTTGATCCAATTGACATTACTAGTATGCAGATTACGAAAAGTGTAAATTCTGAGCATGGGAAGGATAAAGTTTTAGATACGATGGGGATGAAGCATCGTGTTGATTTCGCAGTCTATGTTTGTTGGTGGGATCATCATTCAAAACCTGGTCAATACTCCTCTGCAAAAGTACATCGTTTATTAGAGGTTAAACGGAATATTGACGAACCAAAAACAATTGATGATTATACTGTATTGGTACATGAATTAGATGATTTAAAAGTTGAGATTATTAATGGAATGTAATAAAAAGCGTCAGAATAGTTAAAAGAAAGTATCCTTATAAAGATATACTCTATCAATTTATTAAAGGAAAGTCGCATCT # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [60.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 129831-128743 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH791835.1 Bacillus cereus VD169 supercont1.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 129830 32 100.0 34 ................................ TCACCTTACATTGTATCAGGTAAAGAACTGTTTA 129764 32 100.0 34 ................................ TTTACTAAGTCAGAAACTGGCGAAAAAGGAATGA 129698 32 100.0 35 ................................ AACAAGTTACGTTTAAACATAGCTGGTCATAACAA 129631 32 100.0 34 ................................ ATATAACCATCAATCGTAGAATTAAAAGTTAATT 129565 32 100.0 33 ................................ AGACATCTCTCCTACATACTCATGCTCCTTTAA 129500 32 100.0 34 ................................ AAACATTTCACCGCCTCTTGCTTATATAATTTGA 129434 32 100.0 34 ................................ ACTAATGGGAATCCTTTTTGATCCATAATGTCGT 129368 32 100.0 34 ................................ TAATTTTTTATCTGGATTCTCTCCATCTACTTTT 129302 32 100.0 35 ................................ GCATTCGCGTTCAGTGACTAACCAATCCGCTAAAT 129235 32 100.0 34 ................................ GATATAAAAGACCCAATGGACAATTTGCCCGATT 129169 32 93.8 34 ....T...........T............... TTCTATCTCTAGCCGCCGACTACCATCTTCGTCG 129103 32 90.6 35 .......T..T.....T............... ACTACAGATCATGAGGATAGTAATGAAGAGGATGA 129036 32 96.9 33 ...........A.................... TTTGCAACTAGCTCAATTGTTTTTCCGTTTTCA 128971 32 93.8 34 .........C.........T............ GCTGGGCGTCACTTATGAATGGTCTAACATCTAA 128905 32 90.6 34 ........A..A........A........... TACCTTGGGTTTATATTTATCTGGAACGCTCATA 128839 32 93.8 33 ...........A.......T............ ATAATATCACACTTTTGACAAAATTCAGTCATG 128774 32 87.5 0 A.T......C..C................... | ========== ====== ====== ====== ================================ =================================== ================== 17 32 96.9 34 GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Left flank : AAGAATGTGGAGAAGGATATGTATGTATTAATGACGATATAGGAGAACAGGGTATGTGCTTAAATTGTGGAGCGAAGCATGAAGTTTCTACGTGCGAAAGATGTAAAGTAACATATAACCAAAATATTGATGGTGAAGAATATCTTTGTGAAAATTGCATGGAGCATTATTTAGGGGAATAGGGAATTTGATGTTAAGTTCAAAAAAATGCTCTACAAATTAATATATGTATATAATTTACAAAAAGTGTTGTATTCTATAAAAATACCAATATTTCATAATTATGAATCGAATAGTAATAGATTAACCAAAAGTTATTTTAATTTTTTAGGTGCGAATGTATAGCAAACATGAAATTCCTAGTACATTCGCACCTAGAATTCTCATGCTTTATAATGGGGATTTATGATTTTTATACAAATTACTTTATTAAATAAAAACATTTGTATATTTTTGGATAAAACTAAAGTGTTTTTGGTTGATTTCGAACACAAATCGGC # Right flank : AGTTTAGTAGATACTCAACTAGAAGCATCTATATCTACAGTATCTAATACAAAAGTAAAAAGTATAAAATGGAGGGAGATTAAATGACCTACATTGCTCATATACGCGAGAGTGACAGTCAAGTACAAACAGTCGAAGAGCATTTATTAGGAGTAAAAGAACTAGCTGAAACCTATGGAGAAAAAATCGGTATAAAACATTTAGCTGGTTTAGCAGGTATGCTCCATGATATGGGTAAATACACCAATGAGTTTAAAGAATATATATTGGAAGCAGTAAATAATCCTAATTCTCCACCTAAAAAGGGGAGTGTTGACCATTCAACTGCAGGGGGGAAATTGTTATATCAATTATTCCATACAGAAAATATAATTCCTTACAAGGGGATAATATCTGAGATAGTGGGAAATGCCATTATTTCTCATCACGGATACCTTCAAGATTTTTTAAATCCAGATTTAGAATCGCCCTATTTAAATAGAGTGCGAGATAAGCAATTA # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCTTATATAGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACCTTATATAGGTGCGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.50,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [15-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //