Array 1 16647-16340 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACMSD010000011.1 Bittarella massiliensis strain NSJ-19 N6_ctg011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =================================== ================== 16646 34 100.0 34 .................................. GAGGACAGGCATATCATAAACCAAAACTCCTATA 16578 34 100.0 35 .................................. ATATTGTCGATGGTTTCAAAGGTATAAGGGAAACA 16509 34 100.0 35 .................................. CTGCATCCTCAACGGCAAGGGCGAGAAGGGCGAGG 16440 34 100.0 33 .................................. ACTGCGCCGGATAGGCGGTGTTCTCCCAACCGG 16373 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== =================================== ================== 5 34 100.0 34 GTCGTCCCCTCACGCAGGGGACGTGGATTGAAAT # Left flank : CCAGGCGCCGGTCCACTTTCTGGTCATCCCCAAGGCCCACATCGCCAGCTGCGACGAGCTGACCGAAGAAAACAGCGCCATTGTCGCCCACATCTTCGCCACCATCGCCAAGCTGGCGGGGGAGCTGGGGCTGAAAGACGGCTACCGCATCGTCAACAACTGCGGCAAGGACGGCGGCCAGACGGTGGGTCACCTGCACTTTCACGTGCTGGCCGGCCGCTCGCTGGCCTGGCCCCCGGGCTGATTGCCCTGCCCTCGCATATCCCTCGATTCAAAGAGCTGGACGCGTCTGCGTCCAGCTCTTTTGCGCGCTTTTCCCCAATTCGCGGGTGCGAACCCCAAGTGCACATCTATTTGCCGGGAGGTTCGCACTGTAGAATGCCGGCCTTTTGCGGTGGAATGGAGAAATTCGGAGAAAATAGGATTTGCATTTGACAGGATTTTGTGGAAAGAGTATCCTAAATAGGAAAGTAGTGTCTTGTTTTTTGTACTGTTTTGCT # Right flank : TCCTGCGACATGGAGAGGGCGACGACTTTCAGGGGGCGTCCCCCGCTTGGGACACAACCCAAAACTTCAGCGCCTGCACAGATACAGCCGCCGTGCAAACTCCTTATCCCAGAGCAAAATCCTCCGCAACAAAAAGGAGCCGGAGCAGCACCTGCTGCTCCGGCTCCCTCTTTTTACCCACTTGATCTGTCAATTGAAGTTCAGGCGATGACGTTGCGGGGCTCTCCCCGGCAGAAGGCGGCGATGTTTTCCCCCAACAGGTCGACAAGGCGCTGGCGGGTCTCCAGCCCCTTCCACCCCATGTGGGGGGTGAGGACCACATTGTCCAGGGTGTAGAGTGGGTTGTCCGGCCGGGGAGGCTCCTGCTCCAACACATCCAGTCCGGCCCCGGCGATCTGTCGGGCAGTCAGGGCCCGAATGAGGGCGGGCTCATCGATCAAAGCCCCACGGGAGGTGTTGATGAGGAAGGCGGTCGGTTTCATCTTGGCGAGGGCCGCCTC # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTCCCCTCACGCAGGGGACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.30,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : NA // Array 2 72537-72309 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACMSD010000011.1 Bittarella massiliensis strain NSJ-19 N6_ctg011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 72536 32 100.0 33 ................................ TACGCCAAGAGCAGCGACTTCGGGCTGCTCAAA 72471 32 100.0 34 ................................ CAACTCTAGAAGAAGTAGGAGATGGCAAAATTTT 72405 32 100.0 33 ................................ TCGCGGTCAAGCTGCCGGAGGGCATCCTCCTTG 72340 32 75.0 0 .C...G...CG...A......C.AC....... | ========== ====== ====== ====== ================================ ================================== ================== 4 32 93.8 34 GTCGCACCCTACGCGGGTGCGTGGATTGAAAT # Left flank : ATGGCGGCCGTGGCCGTATACACTGCCTGCCGCCGTCGCCAGACCGATGCGGATGCCGAAAAGATGGGGGACGAGCGCCCTGGTCTCCTCGGCAAAGACCTCTTTTTCTACAGCGTGGTCTCCGCCCTGACAGCCTTGCTCTACCTGTTGCGGGGCTGCGCCCTCGACGGGGTCGCCCTGCTGGCCGTGGCGGCCGCCATAGTCGCCAGCGCCATTGTTGTGTCCCGGCGAGAGGCAGAGGAAAAAAGTGAACACTAATTGAAAAGGAGCGCCTTTTAGGCGCTCCTTTTTTGCGGGCTGGGGCTTTTTTACAATGCTATGGCTTCCGGTGCGAAGGGCAAGTGGACGGGGTTTCCCCAGTACCTTCGCACCGCGTGTGGGCAGTTGCAGGGGAGGAGTGACAGCGGTAAAGGGGGATTTGCCGCTGCAAATTGACAGAGCATTGGGGAAGCGGTATAGTAAAGAAGAAAGAGGATGAAGTGTTTTTGTGCTTTGTTGCT # Right flank : CCTCCCAAAGCACACTCCTGTCACCATGGTACATGGATAAACTTTCTAAGAAGTAGTAATCACAGCGGCGAGACGGTTTACCGTATCCCCCGCGGTTTCACCCTTCAAAACAGCGAGAACTCCACATTTGCGCGCAGCCTCACTATGCTGCCACCCCTTCTGCCTGAAAGCACTCTCCGAGTTTTTGCCCCGCACGAGAGGGGATGACACAGAGGGGGTTGCCCCCACTTGCCCACCCAGCTCAAAGGGAGGCAGGCCGCTTGCCTTTGCACCGTGAGCAGGTGCGAGGCGCACATAAAAAGAGCCCTCCGGCCGGAGGGCTCTTTTTTTATAGCTGAGCGAAAATCCGCGCGCCCTTTGTGTTCAGCCACCCCCACATCGCCAGACAGAGGAGGACGGCGGCCGCAGTGGCCACAGCCGTGACCAAGACCATGGACAGGTGCAGGGCAAAACCGAGGCCGATGAACGCCGCGGCCAGAATGGGGGTGGTGAAGTACCCC # Questionable array : NO Score: 8.55 # Score Detail : 1:0, 2:3, 3:3, 4:0.69, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.60,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 181346-181511 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACMSD010000001.1 Bittarella massiliensis strain NSJ-19 N6_ctg001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 181346 33 97.0 34 ................................A TTTATTCTATGACGATTGTAACTGAGACACCCTG 181413 33 100.0 33 ................................. GGACAAGGTTTTGCGCGTTCGCCAACTCTTTCA 181479 33 97.0 0 ..........T...................... | ========== ====== ====== ====== ================================= ================================== ================== 3 33 98.0 34 GTCGCACCCCGCGCGGGTGCGTGGATTGAAATG # Left flank : CATGAGCTAGACCACCTGGACGGGGTAGTCTTTTGGGAAAAGGCCATCTGCCAGGTCTTTCCCCAGGAGCAAAAATAAAGGGGCGACTTGCCGCCGGTATGGGGACGGGTTGTGAAAGAGGTAGAAACGGCTTAAAAACACCCTTTCTGCTTTTTGGAATGGGCTGCGGAAGACTCGCAGAAACGGGTCTCTTCCGCGCCGGCCTCTCTCTTTTTAATTGACATACCCTATTCTGATTGGCTTTTTTGTGAAAAAGCTTATCGGAAATGGAGGAAAGAAGGGAGGGAGAGGCCGCCCTTAAAATATCGCAGCTTTTACCGCTTTTGGGGGCGGTGCGAACCCCAAGTGGACGGGAATTCCCCGCTAGGTTCGCACTGAGAAATGGCAGGATAAATGGACGGGGAAAAAGAAGAGCGGACAACAGCCAAAAAATTGACAAGCGTTTGTCGAGAAGGTATATTGAAAGCACAAACAACAGTGCACTTTTGTGTAAGTTTGCA # Right flank : GCAGATTCGCTTCTGCCGCTTCCCGACGCAGGTGTGTCGCACCCCGCGCGAGTGCACATGTTACTCTTCCCCCCCTTCGCGGAGTTGAAATTTGTGCCCATATCACAGCTGTGCGCAGTGCAGCGCAAAACGGCGCGGCAAGTGGTGGCTGCGCATTTGCAAAAAACTTTCTGCCACAAGCGCACCGATGGCCGATGGCCACCGGCAGAAAAACCACTGACAGGCCAATGGGCAAATGAGGAAAAAGGAGGCAGATGTGTGAGGAAGAGAGGCTACTTGCTGGTGAGGGCCATTCCCATTTTGTTTACCGCACTGTTTTTGGCGAGGGCGATAATCAAGGCGCAGAATGTTTCAAGCAGGCTCATGATCCTTCCCTTTTTGATTTGCAGTGTTACAGAGCTTTTGCGAACGATGTTTTTGGCGGCGGGCTGGGAGAAGGCGGCAAAGCTGCTCAACAAGGTGTACGCCGTCAGCTTTTTGCTCTACGTGTTTGGCTTCTT # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGCGCGGGTGCGTGGATTGAAATG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 194943-196440 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACMSD010000001.1 Bittarella massiliensis strain NSJ-19 N6_ctg001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 194943 33 97.0 34 ................................G CTTTATCGCCAATCAAAATGAATGACGTTCGTAA 195010 33 97.0 34 ................................G AAACCATCGACAATATAAACCAGTAAAAATGCCA 195077 33 97.0 34 ................................G AATTGGGAGCTTTCCAGGGTGGCGAAATATAAGA 195144 33 100.0 32 ................................. TATCGCAACGAATATTGGTATGGGCATCTTAA 195209 33 97.0 33 ................................C ATTCACGTCTATCAAAGTGATTTCTTCGGCAAC 195275 33 100.0 33 ................................. TCCATGGGAATGCTCCTTTCAACTGATGCAAAC 195341 33 97.0 33 ................................T TGGCGGGCTGTATACCTTTTCAGCAGATACTGG 195407 33 100.0 33 ................................. AAAATGCCCTGCCGCTCCGCATTCTCCACGTAT 195473 33 97.0 34 ................................G AGAGATTTGACGCACAGCAGGAACGGCAGCTTGA 195540 33 100.0 33 ................................. TCATAGATCATGAATGCTTCAATAGGTGAAAGA 195606 33 100.0 34 ................................. TTTTCTGGGATTGGGATTCTGTACTTTTTGCAAT 195673 33 97.0 35 ................................C TCTTTGGTAGCAGCGGCCAAGTAGAACGGCAGCTG 195741 33 97.0 33 ................................G TAGAGCGCAAGGCCGTAAACAATGAAAAAATCG 195807 33 97.0 34 ................................G ACAGCAGCTATACCACGGCTACAGCGGATGAGAC 195874 33 100.0 33 ................................. TTTTCGTCAAGCACGTCTTGCAGCTTGTAATAA 195940 33 97.0 33 ................................G TACCACTATCGTTGTATAATTAAATAGTAAGCT 196006 33 100.0 34 ................................. TAAGGGGGAAGTCTGATGGCAGGGTATAGACCAC 196073 33 97.0 34 ................................T TCAGAGCCAAATTGATAGCAGCAACATCTTCCAG 196140 33 100.0 34 ................................. TAAGGGGGAAGTCTGATGGCAGGGTATAGACCAC 196207 33 97.0 33 ................................G CTCCCATCCAACAAGGACCGCGGGAGGCACATT 196273 33 97.0 35 ................................C GTCTCTAAGCCCACAGCGTACGAACATCTGACTTT 196341 33 93.9 33 .C........A...................... CAACACTCCCAGCGGTAGACTTGCAGATGAACC 196407 33 84.8 0 .C........A............A......T.C | A [196434] ========== ====== ====== ====== ================================= =================================== ================== 23 33 97.4 34 GTCGCACCCCGCGCGGGTGCGTGGATTGAAATA # Left flank : TCGAGTACACCGGCTTGCGGCCGGGAGAGAAGCTCTATGAGGAACTGCTGATGGACGAAGAGGGGATGAAAGAGACCCCCTACGAAAAAATCTTCATCGGCCGGCCGATCGACATCTGTCCCGACGACCTCTGGCGCTCCCTCGACGAGATGCGCCCCCTGGCGTACAGCAACCAGCCGGACAAGGTGATTGCCGAGCTGCAAAAGATCGTGCCCACCTTCACCCCCACCCCCAACCAACACAGTTGAGAGAAGAGCGGCTTGCCGAAGAGATGTCGGCAAGCCGCTCTTTTGCGTCTGGGTGGAGAGCCAGGAGAAGTGGAGGCTTTGGTGCGAACCCCAAGCGCACAGGGATTTGCCGGGAGGTTCGCACCAAAAAATGTCCGCATATTGCCGGGGAAAAGGAGAAGACGGCGGACAGAGGAGATTGATTTGACATGGTTTTGTGAAAAGAGGTATAGTAGAAGTGCAGGTTGACGCAGGTTTTTGTGCCAATTTGCT # Right flank : CCTCGAACTGCCATGTCGTCAGCTCGGAGGATGTAGCTGCATCCCGTTTGGGTGCGCATGACAATAGCAAATTATCTCTATGTAACTGCCCGCTTTTCCCCATCCCTAAAAAAGAGAGCCTCTAGGTATTCCCCGGAGGCTCTCTTTTTCACTCTATGCCCTCTAAAAGGCAGTTATCTCTCTCCGCCATTCTGTTTTCGGGTGCGGTGGATGAGATAGATGGCGGACAGCAGCAAGCTAACCCCCAGCAGGAGGAGCGCCGCCAAGTCCCAGGAGCAGGTGGCGTGGACGGCGCAGAAAACGGCCGCAGCCGCCAAAGTGGTGAGGACAGCAAAATCACAGGTTTTCACGGGTACTTTCCTCCTTTCTATCCAGTTGGCGCTTGCGCGCCAGGAGATAGGCCAGGGCGATTGCCGTCAGCGCCAGCGCGAGCCAGTGCACCCAGCAATCTGCCGGCTGCCGGTGGCCGCGGCCACCCGGTTCGCCGGTATAGGGCCCAT # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.50, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGCGCGGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 44950-45314 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACMSD010000002.1 Bittarella massiliensis strain NSJ-19 N6_ctg002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 44950 33 78.8 33 GC.........T.TG..G..............T GGTCCCCAGCGTGCCGTGTGTTCTCACTTTCGG C [44953] 45017 33 100.0 33 ................................. TACCGCCAGTGCGGTGCTCAATGATCCGCACCT 45083 33 81.8 33 G....A....A..AG.................G GGTTCCTCGGATATCAGAGCGGGCGACGGCGCA 45149 33 81.8 35 G....A...T..A.G.................C CTGACCGCGTGCCAGAGGAGGTCTATGCCGAGTAT 45217 33 75.8 32 G.............G..G.A....GG..G...C CTCGCTGCAACTGTCCTGCAGCAAATCTGCCG 45282 33 75.8 0 G...T....T......AC.T......C.....T | ========== ====== ====== ====== ================================= =================================== ================== 6 33 82.3 33 TTCGCCCCCCGCGCAGGTGCGTGGATTGAAATA # Left flank : GAGGCGGTGATCCGCAAGCTGGACACCATCGTCCGCTCGATGGTGGTCACCTACAAGACCAAGGACCACGCCATCGTCTTCTCCATCTCGGCGGGCTTTGCCATGGCGCCGGAGCAGGGGCGCACCTTTGACGAGCTCTACCAAAAGGCCGACATGGCCCTCTTCAGCGCCAAGATGGGCGGGAAGAACGCCTTCTCCAAATACCACTCCGACATGAAGTCCGTCCGCTATGAGCTGGCGGAGAAGGAGCTGCCGCCCACCCTGCACGGGGAGCGGGATTGAAATGTAAAATCCAGGTGATAGGAGGGCTGCCGATGCGCCGCGCCCTCGCGGGGGTGCACGGGGGCGCTCTCCCCACCCGCGCCCCGTGTGGAGGGCGGATGTGGCTGCCCCCAAATCGAAAGGACGGGCCCCAGGCCCCTCCTGCTTCAGTTGGCGCCGCGACTTGTAGGGGGGAGGTTGAAATCACACCTCCGTCAGCCGCCGCGCGCCCAAATGCC # Right flank : TTTCTGCGCCGGAGCGGTGTTGTTTGCGGTGGCGGTCATCCCCAAGCGGGTGCAGGGGTCAAGAGATGGCGGGAGACACCCGGCGGCGGGGATGCAGCCGCGCCCCGCACGGGCGCGAGAGGGAAAACTCCGGCTGCGACGCCATCTTGGGCAGGCGGCAGCTGTTGCGCCCTGTGGCGGCCGCGAGGAGTGAAATCTTGGCCCGGCGAGGGGGAGAGCCCGCCAGCGACAGTTTGCGGGTGGGTAGACAGAAAATGATTGCCCCTTCTCCGCCCCTGCACCCATAGGCCGTGGCATCCCATGCGGGTGTGGCGGCGGGAATGCGGCCTGGGCGAACGCCCCTTCTGCCGATTCATCGGACCATCTTCCCCCTGGAAAAGAAGAAAAGAGAGAGCGCCCCCGAGAGCAGGCTGCTGCCTCCCGGGGGCGCTTGTGGTTTTTCTTCGCCCTCCCGCTAAAGAGGGGGGAGAGAGCGGAAGGATGAGACGCATCCGGCCGCC # Questionable array : NO Score: 3.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.11, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTCGCCCCCCGCGCAGGTGCGTGGATTGAAATA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCCTCGCGGGTGCGTGGATTGAAATA with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.40,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 119284-119861 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACMSD010000002.1 Bittarella massiliensis strain NSJ-19 N6_ctg002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== =================================== ================== 119284 34 100.0 33 .................................. ACAAGGTCGTCCTTTTCAACGTCAAGAAAATAC 119351 34 100.0 33 .................................. ACCTTTGAGTTTTTCGGTGTCCTTGGTCTTGTA 119418 34 100.0 33 .................................. GTAACAATACAATTCTTCGTTTCCTAAAATTAC 119485 34 100.0 34 .................................. GGTCTGCTGTTATGGATTGAAGTGGCGCAAATAG 119553 34 100.0 35 .................................. ACATTAGACACTAGTCGCAGCTTTCAAGCTGTCGG 119622 34 100.0 35 .................................. AAATGATGCGGATCTCAGCTATGCGCGACTCAAAG 119691 34 100.0 35 .................................. ATTGGTTTGTCAAAGTGTAAATTATTTCCACCAAA 119760 34 100.0 34 .................................. ATAACCGAGGTAACGATGATTTCTTAGGAGGTGA 119828 34 97.1 0 .......................C.......... | ========== ====== ====== ====== ================================== =================================== ================== 9 34 99.7 34 GTCTCGCTCCCGCGCGGAGCGAGTGGATTGAAAT # Left flank : AGTTCCTGCCGGTGGACATCTACAAGTCCGGCGCCACCGACTACCGGTTGGAGGACGGCAAGATTCGGCTGCCCTTCAACTGCCTGCGCGGGCTGGGCGACACCGCCGCCATCGCCCTGGAGGAGACCATCAAAGAGGGGGGCTTCATCTCCATCGACGAGATCCAGACCCGTTCGGGCATCTCCAAGACGGTGGCGGACAGCCTCAAGGAGTGCGGCGCCTTCGGCGACCTGCCCCAGTCCAGCCAGATGACCTTCTTCTGATTGCTCTGCCGTTTGTGCGCGCTTTTACTCGGCAGTCCGCCCCTTTCTGGGGCGGGCTGCTTTTTTGTGCGAACCCTAAGCACACACTGTTTCCCCGGGACCTTCGCACCGAAAAATTGGGTAGCAGAGTGGGGGAAAGGGGGAGAAATGGGAGAATAGATCTTGCAGTTTGACATTTGTTTGTGGAAGTTGTATTGTTGTGGTGAAAGAATGCCTGCCTTTTTGTAGGTGTTTGCA # Right flank : TACCTTATAGATGCAGCTGGCGTTGCCGTGCTCCCGTCTCGCTCTCCACATAGCAAGTAACTAAAATCTTTCCGTCGATTTGCGAATTGCCCTACCCTCTGCCTTTTTAGAGGGTGGCAGGGGACATCCTATTCCCCACAAAGCACTTTCCCATTTCCCTCCATCAAAAAAGAGAGAGCCAGACAGCACCACCTGTCTGGCTCTCTTTTACTTCTTCTTGCGGGGCTGGTTTTGCCCTCGTTGTCCGCCCTGTCCAGCGGGTTTTCCCTTGGCCGCGGGCCGTCCGCCCGGCTGCCTGGATGCGGGTTGCCTGGGCGGAGCTGGGCGCTCTCTTCGGGGCGGCCGGGGCTGTTTGGGGGTGGGCTCCAGGATTTCCATGGGGTAGGGGTGGTTTTTGACCACCGGGATCTCCTGCTTGATGAGCTTTTGGATGTCCTTGAGGTAGGGGATCTCGTCGAACATGCAAAAGGAGATCGCCGTGCCGCTGAGCCCTGCGCGGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCGCTCCCGCGCGGAGCGAGTGGATTGAAAT # Alternate repeat : GTCTCGCTCCCGCGCGGAGCGAGTGGATTGAAATG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.00,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA // Array 1 70376-70074 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACMSD010000006.1 Bittarella massiliensis strain NSJ-19 N6_ctg006, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ======================================= ================== 70375 31 96.8 35 ........T...................... TACCACCCAGGGGAGCTCATCGAGACGGTGACCAC 70309 31 100.0 35 ............................... TGCCCGCCGAACAGATGCCATAGCGAGAGGCCCAG 70243 31 96.8 39 .....................T......... TTTGAGCCAGACCACCGACCGCTTCCGGGCAGCATACGA 70173 31 93.5 37 .............A......A.......... CGCGAAACAAATAATGAGACCGCCTGCAAAGGAGAGC 70105 31 77.4 0 ..................A...A.T..ACGG | C [70076] ========== ====== ====== ====== =============================== ======================================= ================== 5 31 92.9 37 AAATCGCCCCCTCGTGGGGCGCGGATTGAAA # Left flank : GCTATCCGCCCTTTTTGTGGAAGTGAGGGGGAGAGGGAGTGCTTTTGCTCATCACCTATGACGTCAACACCGAGACGCCGGAGGGGAGACGGCGCCTGCGCCGGGTGGCCAAGGCCTGTGTCGACTGCGGCCAGCGGGTCCAGAACTCCGTTTTCGAGTGCGTGGTGGATGCGGCCCAGAGCAGGGCCCTTCGCCACCGCCTAGAACAGATCATCGACCCGGAGAGGGACAGCCTGCGCTTTTACAATCTGGGGAACCGCTATCAGAACAAGGTGGAGCACATCGGTGCCAAACCGGGCTTTGACGTGACAGAACCGCTGATATTCTAGCGGTGCGAAGGCCAAGCGCACAGCATTTTCCAGGGGGGGTCGAACCTGCGCTGAAGCAGCTGCGGCCCCCTTTTTGCAGATTGAATTGCAAAAAAATGAAAAATTTCTTTGGGCTTTAGCCATTTGGGAGAAGATAGAGAGAGAAGGCCGACGGCACAGGGCAATTTTGCG # Right flank : TGTCGGCAGCATTTGAATCGCCTCCCCATAAGTGCGAATGCGCTTTCTCCAACGACCGTTCTAAGCCATCTGTCGGCCAAACGAAATTTTCCAAACAATGGAACTTTGAAGGTTTGCCCAACCGCCTTTTCCCTATCCGGCCCCCAACACTATCCAGCCATAATCCCTGCCCTTTCGCCAATACTAATCCCGTTGAAATTTGTGACAGACGGGAAGTGGTTTTGGGTGAAACGAGCGGGGGAATCGGCGGCGGTCTTCGCCATCGGCTGTGTGGGGTACGGCGCCATCGAGGTGCTCTGGCGGGGATATACTCACTGGACCATGGTGCTCACCGGGGGCACCTGTTTTTCCATCCTCTACGCCGTCAACGGCAAGCACCCTGCCATGCCCCTCTGGAAAAAGTGCCTGGTGGGGGATGCAGTCATCACCGGCATTGAATTTTGCGTGGGCTGTGTGGTCAACCGCTGGCTGCACTGGGGCGTCTGGGACTACTCCCAGCT # Questionable array : NO Score: 6.72 # Score Detail : 1:0, 2:3, 3:3, 4:0.65, 5:-1.5, 6:0.25, 7:0.01, 8:0.8, 9:0.51, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AAATCGCCCCCTCGTGGGGCGCGGATTGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.10,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : NA // Array 1 30689-30323 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACMSD010000009.1 Bittarella massiliensis strain NSJ-19 N6_ctg009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 30688 32 93.8 34 ..............A..G.............. ATTGGAACCGTAGTCATTTTGGGCGCAGTGTACA 30622 32 100.0 34 ................................ TCTAAATGCATTCCAGGCTGTTATGGGGACGTTA 30556 32 96.9 36 .....G.......................... GAGTGGTGGGTTCGGTGCAAGAAATGTAGTGCTCAA 30488 32 93.8 35 .........C.......G.............. ACATCGACTCCGATTCCCCCTGGTATCCACTAGAG 30421 32 90.6 35 .................G...T..G....... TCGGACAGCCCCTCGAAAAACGGGAAGAAGCTGTG 30354 32 81.2 0 ........TCA..T...T...T.......... | ========== ====== ====== ====== ================================ ==================================== ================== 6 32 92.7 35 GTCGCACCCTGTGCGGGCGCGGGGATTGAAAT # Left flank : GAGTTTGGGGACAGCGCCCTGGAGATCGCCGTGCGGGTCTGGACCGAACCGGCGAAGGTCTTCCCCCTGAAATACGACCTGCTCGAGGAGATCAAGCGCACCTTCGACAGGGAGGGCATCCCCATCGCCTACCCCCATTTGGATGTGACGCTGGTCAAATAAAAAAAGCCGCTTTTTATGGCCGCCTTGACGCGCTGGACAGCGCCGGGGCGGCTTTTTGTCGCCCCAGACAGAGGGCCATTTTCGCCGCTGCGCTTCCCCCGCCAACGCGAGCCCTTGCAGGCAATGGCCTTTTGGAGAAAACGGAGAGAAGGGATCTGCGTTCAAGACAGTGCGAATGGCAAGCCCGCAGGGATTTTCCGGCAGGCTCGCGCTGACAAAATAGAAGAAAATGGAAAAACAGGATGGGCGGCAAAAGAAATTGCGAGAAGATTGACAAGGGTCTGTACAAAAGATATAGTAAAGGGTAAAATAGGTATTCGCTTTTATACAAGTTTGCT # Right flank : TGGGCAGACACAGCGGTCAGTCTCGTCGAAGCTAGTCGCCCCCCTCGTGGGTGCGGCAACAGACCGCTCCGCCACCTTGCCTTCTGAGCTCAAAAAGAGCTGCCGCCGATTCTCTCGGCGGCAGCTCTTCTGCGGTGCGGGCGGCTTTAGCGGGCGGTGTCGATTTTGATTTCGTGTTCACACTCGGCGTTGCACTGGGCGTTTTCCTTGGTGAACTTCTGCTTGGCCTGGTTGACCTTGTCGGCCTGGGCGGCGGGGGCCTGGTACCAGCCCCGCTTCTGCATCTCCTCGAAGACCTCCATCTGGATCTGGTGCTCCTCGGCGAGGATGTCCATCATCACGCCCTTCATCTGCTTGGTGGCGCACTCGTCGGCAAAGGTGTTGTAGATGCCGGTGATCTGTTTTTGCGAGCTCAGCATGTCGGTCAAAATCGACTTGTCATCCATCATGTTGTTCATCTTCCGTTCCCCTTTCCCTGCCTGCCCTACAGGCAGGAGAGC # Questionable array : NO Score: 6.81 # Score Detail : 1:0, 2:3, 3:3, 4:0.64, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTGTGCGGGCGCGGGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCGCCCTGTGCGGGCGCGTGGGTTGAAAC with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.80,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //