Array 1 80626-78939 **** Predicted by CRISPRDetect 2.4 *** >NZ_POKC01000036.1 Streptococcus suis strain 1722 SS_1722_Contig36, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 80625 36 100.0 30 .................................... TACAGCATTAGACATTATTAAACTCTTAGT 80559 36 100.0 30 .................................... CAACCAACTAGAAAAGCACTGTGTAAGGTA 80493 36 100.0 30 .................................... GCCAAGCCAACCAAGCACCCCAACAGGCAA 80427 36 100.0 30 .................................... ATGTTTAACTAATTCAACCAGTGTTTATAA 80361 36 100.0 30 .................................... AGGCTGTAACGGTGACATCGGTGCGGTTTT 80295 36 100.0 30 .................................... ATTTGGAAACAAATCGTTGGAATATACGCA 80229 36 100.0 30 .................................... CGTCTATCATGAGAATGATGACGATCATCA 80163 36 100.0 30 .................................... TGTAATATCCATCGGCTGGCCGCTGAACCC 80097 36 100.0 30 .................................... GTTAAATTTTCTGAATAATCAACTAATTTA 80031 36 100.0 30 .................................... TTGTAGATAGCCCAAACAATCAAACGGACG 79965 36 100.0 30 .................................... CCCTTAATATTACCGAGGCAGGCAAGGTTC 79899 36 100.0 30 .................................... TAAAAAATCAATCGGTAAATGTTGTCTAAT 79833 36 100.0 30 .................................... CCTCAACCGTGTTGCTCATTACTACCACAG 79767 36 100.0 30 .................................... TAGGCAACATACTATCTCCACGAACGCCTA 79701 36 100.0 30 .................................... TTATTTTAATTATCTAAATTCTTTCTATAG 79635 36 100.0 30 .................................... TAAAAAATCAATCGGTAAATGTTGTCTAAT 79569 36 100.0 30 .................................... CCTCAACCGTGTTGCTCATTACTACCACAG 79503 36 100.0 30 .................................... AGATATATTTCAGATTGCAAAATCCTGGTA 79437 36 100.0 30 .................................... TCTATTCAGAGAACAATGGAAACATTGAAC 79371 36 100.0 31 .................................... TAAAGGTCCATGGGTACATGAACAGGAACAT 79304 36 100.0 30 .................................... TGGCATCTTCTTGATTTGTTCTTCTTTATT 79238 36 100.0 30 .................................... AGGACATCAACAAGTGATTTACCATCTTCA 79172 36 100.0 30 .................................... CGCCACAAGTTATTTTTCTACAACTGTGCT 79106 36 100.0 30 .................................... TATGCACCAAGTCAACTGCCAAAATGTCAT 79040 36 100.0 30 .................................... GGGACTGGTGCTTGATATTCTTTCTGGAGT 78974 35 88.9 0 .........................A..A-.....G | T [78941] ========== ====== ====== ====== ==================================== =============================== ================== 26 36 99.6 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGAATTCTTGTCTTTATCAATGTGTTATCCTATTTGACAATGGATGAAATTCAGAAAACTAAGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAATAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGAAAAATATGGTAAAATAAGTACATATAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAAATTTTGTGGCAAAAAATAGTCTACGAG # Right flank : CAGTAAGTTTATAAAGGAAGGAGGGGAGTATTTGGATGTCAAAACTGTTATTTTTTAATACTCCTATTTCTAACAGTAGCAGTGAATATTGTAACTTTAATTATCAAAAAAATTACTAAAGAGATCGAAAGAAATAAGTGGGGATGAAATTGACAAAGAGCTTAATTTAATAGGTCTTCCTGATTAAAACCTGCATTTATATCATTGTTTTAATTTTTCTAGTTTTTACGATAGCCTAGAAAATACTGTCGAAATTAATTCCCCTCCATTTTCCTCCAAGATTTCTAACTCGCCCTTGTCCCATCTCCCTCTCCATGCTATACTATATATAATCGTTTTACTTCAAAGGAGACAAAAATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGGCGGGATGATTGTTGGGCTGGGAACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGTCGCCGGGTTGCGGAAGAGGGCTTGCAGAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.20,-2.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //