Array 1 219823-219973 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKMX01000012.1 Streptomyces sp. SCA2-2 Scaffold10_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================== ================== 219823 24 100.0 39 ........................ TCCCTGACCGGCAGGTCACATCGGACCGGCGCACAGACC 219886 24 100.0 40 ........................ TCCTTGACCGCGAGGTCGGCACCGACCAGCACCCCTTGAT 219950 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================== ================== 3 24 100.0 40 CAGCCCGGCCGGCGCTTGAGGCCA # Left flank : CGCGGTGGCGACCGTACTGGCGCTGCTCGTCAGCCTGGTGACGACCTTCGCCACCTTCTTCCTCGGCCAGGCCCTGCTCGGGAACCTCTCCGCCTCCATCGGCGACCCCGGCGTGCTCCGGGCCGTGATCGGCGCCGCCCTCTACATGACCCTCATGGCCGTCTTCTCCATGGGCGTCGCCGCGATGCTCCGCTCCCCCATGCTCTCCCTCGGCATCCTCGTCCCCTTCTTCTTCCTCGTCTCCTCCATCCTCGGCGCCGTCTCCGCCACCGAGAAGATCGGCCGCTTCCTCCCCGACCAGGCCGGCTCCAAGATCATGCAGGTGGTGGCTCCGCTGGACGACGACACCCCCTACGGCCCGTGGGGCGGCCTCGGCATCATGGTCCTCTGGGTGATCGCCGCACTGGCCATCGGCTACGCCTTGCTCCGGCACCGGGACGCGTAGCCAGGCGGGTCCTGGCCGTCGGCCGGGCAGCCTCGAACGTCGGCCCGGCTACCAA # Right flank : ACATCCCCAGCCCACCCCGGGAGGGAATTCGCGCTTGGCCGGAACCGAACGCCGGTGACTATCCTCCTTACGTTGACGGGGACAACCCCGGCAAGGAACTCTGTCGACGGGTGCGGGGAGCACATGATCGAGGCCATCGGCCTGACGAAGCGCTATGGCGCCAAAACCGCCGTGCACGACCTCTCCTTCCAGGTGAGGCCCGGCACGGTGACCGGCTTCCTGGGCCCGAACGGCTCGGGCAAGTCCACGACGATGCGCATGATCGTCGGCCTGGACGAGCCCACCAGCGGCCGCGTCACGATCGGCGGCCTCCCCTACCGCCAGGTCCCGAACGCCCCGCGCCAGGTCGGCGCCCTGCTCGACGCCAAGGCGGTGCACGGCGGTCGCTCGGCCCGCAACCACCTGCTCTGCCTCGCACAGCTCTCCGGCATCCCGCCCCGCCGGGTGGACGAGGTGCTGGGCGTGGTGGGGCTCCAGGAGGTGGCGCGCCACCGCTCGAA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCCGGCCGGCGCTTGAGGCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [25.0-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 101398-101915 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKMX01000022.1 Streptomyces sp. SCA2-2 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 101398 29 100.0 32 ............................. CAAGTGGTCGATGTCCAGGCCGCGGGCCCCCT 101459 29 100.0 32 ............................. GTGCTGGACACCATCACGTTCGCGGACACCAG 101520 29 100.0 32 ............................. GGTGAGCTCATCGGCACCGTCGACCTCCCCGC 101581 29 100.0 32 ............................. TTCGGGCCCGACCATCCGCACAGCTCGCAGAG 101642 29 100.0 33 ............................. GAGAAGCGGCCCGACACCGTGAGGTGCGGGCCG 101704 29 100.0 32 ............................. CAGGGGGCGTATCCGGCGCCGCCCTTGCCGTC 101765 29 96.6 32 .................A........... TCAGGAAGGCTGCCATGTCTCGCTCCGGCAAC 101826 29 100.0 32 ............................. GCCGGCCTGGCGCCGCGTGCCCGCCGGGAGCG 101887 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 9 29 99.6 32 GTGCTCCCCGCGTGTGCGGGGGTGGTCCC # Left flank : AACACGGCCCCACCCGACACGCTGTTCCACACCCCGGCACCCACCCCCGCGTCGTCCCCGTCCACCACAGAACCCCTCCCCGTAGACCGGTTTGCCGCTGCGGGTCACCTTAGGGGACGGGGGGTTGGGCGTCTTGGGGTTGAGGGGGCGGGGTGGCGTGGGGGTCCCTCATGGGGGTGGGGCTTCGGGGAGTGTGGACAAGGGGCGTTCGGGTGCGTTCGGGTGGGACGCCGAGTGATTCGGGGAGGAGGGGCGTGGCGGGGGTGGAGTTGACGCGGGGTGTTGCCCTGTTCCGATCCGCAGGAGCCATTGGGCGAGCGGGGCCGGCGGTTGGGGGCTGGGCTTGAGAAGCCGGGGTCAGGTCGGGGGGGACTGGGGGAGGATGAGCGGGGCTGATGGATCGGGAGGGGGTTGGTATGCGGCTTACGCCTGAAAGGTCGCAATCGGTGAAGCTTGCAGGGATGGGTGGTGGCGCCGGGTAAAGGTGCAGGTCATGGAGA # Right flank : CTTGTCGAACTTGCGCAACGCCAGCCCCCAGCCGACACACGCCCCCAGCCCCCTCACGGCTCACAAACCCCACCCTCCACAGCCGCCCCCTCCGCCCCCGCGAAAAACCCCACGACCCGCCCCGCACACCCCCCACCAGCCATCCCCCCATGCTCCCCGTCCCCCACCACCAACAACGTCCCCCCAGTCCGCGCCCGCATCGCCCGAGCCCAAGGCAACGGCGTGATCACCTCATCCCTGTGGGCGACCAGCAGCAAGGGCCCGCCCGCCCGGCCCGGTTCCACAGGCGGCCGCTCCGGAGTGGGCAAGCCCGCGCACGTGCTGGTCCCCGGGACCTCGCCGCTGCCCGGGAACATCGGGCGGGTCGCGCCCAGTACCGGGTAGGCGGTGCGGCGTTCGCCGTAGGCCGACCACTGTTCGGCGAACGAGGCGGCGTGCGTCACCTGGGAGCAGAGCAGCGCGGTGCCTGCGAAAGGGGCGACCAGGGGTGGCGCGGCGGC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 153139-152014 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKMX01000022.1 Streptomyces sp. SCA2-2 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 153138 29 100.0 32 ............................. TACCAGGTCCTCCCGCGCACCCTCATGCAGTC 153077 29 100.0 32 ............................. GAAGCGGTCTCCGCAGCGTTCAAGACGGCGTT 153016 29 100.0 32 ............................. CCGACCGTGTCCGACAGCCACGACGTCACCCG 152955 29 100.0 32 ............................. ACCCTCACGTCCAACCTGGCCGTCACGTGGTG 152894 29 96.6 32 ...........T................. GGCGACGCTGGCCCGGTCCGCGCCGTGGGGTG 152833 29 100.0 32 ............................. ACCCTCACGTCCAACCTGGCCGTCACGTGGTG 152772 29 96.6 32 ...........T................. GGCGACGCTGGCCCGGTCCACGCCGTGGGGTG 152711 29 100.0 31 ............................. CGGGTGCGGGGGATGCTCACGGTAGGCGGTT 152651 29 100.0 31 ............................. CGGGTGCGGGGGATGCTCACGGTAGGCGGTT 152591 29 100.0 32 ............................. GACCACGGGTCGTTCCATCTGGCCCGGGATGT 152530 29 100.0 9 ............................. GCCTCGCGC Deletion [152493] 152492 29 75.9 0 .C.A..T....AG.CC............. - TG [152477] Deletion [152464] 152461 21 69.0 32 --------....................G GACGCACTGCCGCGTGACCTGCGCGGGATGCC 152408 29 100.0 32 ............................. AGGAAGTCCAGACGACAGTTCTCGGCGTAGGG 152347 29 100.0 32 ............................. GGCCGCGAGAGCGGCGCAGGACAGCAGTGATT 152286 29 96.6 32 .....T....................... GACTTCGTCTCTCTGTGCGGGACAGGGAAGTG 152225 29 93.1 32 ............A.......C........ GAGCTGTTCCAGAACGAGCGGTGGCCGCTGGC 152164 29 96.6 32 ............A................ GGGCCCGGGTCGATGTCGGGGACGATCAACCC 152103 29 93.1 32 ...T.......A................. TTCGAGTGGTGGATCGACCCGCACCGCGACGA 152042 29 82.8 0 ........G...T.G........A..T.. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 95.0 29 GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Left flank : CATGAGCTGACGCCCGTGCTGTTCACGGTGGCGGAGGCGGGCGACCCGGTGGCGGCCGGGCTGGTTGACCGGCTGGCGGAGGAGGTCGCCAACATGGCGGCTGTCGCGCTGGGGCGGCTGGGGTTGCTGGGCTCGCCGGCTCCTGTGGTGCTGGGTGGGAGCATCTTGGCTGCTCGGCGGCCTGGGCTGGATGCGGGGGTGCGGGGGGAATTGGGCCGGCGGGCGCCGTTGGCGGAGGTGCGGGTGGTGGAGGCTGCGCCGGTGTTGGGGGCGGTGTTGCTGGGGATGGATGCGGTGGGGGCGGGGGTGGGGGCTTATGAGCGGGTGCGGGGGTGGTTTGGGTGAGGGGCGTGTGTTGAGGGCTGGGCGTGGGCTTCAATTGAGGGGGAGTTGGGGCTGCGAAGAGGGGGCGCGTTGTGCGAATTTGGCGCGGAATGCCGGAGTTTTCGAAGTTGGCGTGGGCCGGGGGTTAGGCGGGGTAAACCCGCAGGCCGGAGAGA # Right flank : TACGTCATCGCCGACCGAATCGGCATGATCATGTGGTCCCCGCGCTCGCGCGCAATAGCGGCGGACCAACCACCGCCCCGCTGATGGGCGGTCCACCGCCTGTACGCCCGTTCTCCGCGCAGACGGCCGCAGAGGCAGCATCACCCCGAAGCGTTTCCGTGATCGGGCTCACACGAATGGGGACTTGCCCCCTACCCTGTCAGGGTCGACCTGTACGGGAAGGACAAGGCCATGCCATCTGACACCCCTCCGGACCCGTTCGCCGACCCCCTGGCATTCGGGCAGCGGATGGAGGTGCTGCGGACCAGGCGTGGGATGAGTCGGCCTGTTCTGGCGGGGCTGCTCGGTATGTCTCCCTCGTGGGTCAAGCAGGTGGAGCGGGGCCAGATTCAGATGCCGAAGCTGCCCGTGGTTCTGCGGATCGCCGAGCTGCTGCGCGTGCGTGACCTGGCCGACCTGACGGGCGACCAGGCTCCGTCGGTCGAGCTGTTCATCGGCCC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:-0.25, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 182787-182637 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKMX01000021.1 Streptomyces sp. SCA2-2 Scaffold6_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================= ================== 182786 24 100.0 39 ........................ TCTTTGACCGGCACGGTCGAACCTCACCGCACCCACCCG 182723 24 100.0 39 ........................ TCCTGAAGCCGCACGCACACGGCAACCTCAGCCCAATCT 182660 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================= ================== 3 24 100.0 40 CAGCCCGGCCGGCGCTTGAGGCCA # Left flank : CCACCCCCCGAGCCGCACCCCGCCCACCGAGCCGAACGAGACCCGGCACACCCGCACCCCGTCCCGCACCTCCTCCACCGCCCCCACCTCAGGCGCGGTGACCACCTCCAGCGCCTCCGCGTACCGCCCCCGCCAGAACCCCGCGAACCCACCCGGCACACCAGGCACCCCGACCCGCAACAACTCCTCCACCCCGTACCCGTACGAAGGATCGAAGGAATACCCATGCCGAAACCCGCCCCCCGCACCGGGAGCACCAGCAACACCCGAGAACGATGACGATGACGGCGATGACGGCGATGACGGCGACGGCGACGGCGACGGCTGCGACGGCGACGGCGACGGCTGCGACGGCGACGGCGACGGCTGCGACGGCGACGGCGACGGCGACGGCTGCGACGGCGATGACGGTGACGGTGGCGGTGGCGGTGACGACGGCGATGACGGTGACGGCGGCGGTGACGACGGCATGCCGCCGACTCTAGACACCGCCCACTGAA # Right flank : CCCTGAAGCCGCACCCGGAGCGGCCCCTCAGCCAGAAACCGGCCCAGCCACCCCCACCCCCCGCCGCCGAAGGCGGCCCCCCTGCGAATTCCCTCACAAACCACCCCACATCCCTCCCCCACCTGCTTGATTGGTTCCGGAACCATGCATTCCGCCTCCGGAACGGCAAGGCGCCCCCAATGACGCCGCAGGCGACATCCCCGTTACGCGAGTGTGACCAAACCCCCTCTTGCGGCGGGCGGAACCCCTGGTTCAGAGTCATGTATGCGCTTACAGACAGCGCATACATGTCCGGTAGCGCTCAAGGAGGAGCCGCCATGCATCGCGCCGCCAGAACCGCCACGGCCGTCATCGCCGCGAGTACGGCGTTGGCCGTCGTCACGGGCTGCGGGGGCTCCTCGGGGGCCGAGGTCGCCGCCGACGCCGAGCAGACCCTGACCGTGTGGGCCATGGGGGCCGAGGGCGAGAAGCTCGCCGAGGTCGCCGAGGAGTACGAGAAG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCCGGCCGGCGCTTGAGGCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.20,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [23.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 235613-235094 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKMX01000016.1 Streptomyces sp. SCA2-2 Scaffold2_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 235612 29 100.0 32 ............................. ATCAGGTCGCCCGGCTCCAGGCGGTCCCGGGA 235551 29 100.0 32 ............................. CGCCGGTCCTCGACGGAGTCGGGGTTGAGGAT 235490 29 100.0 34 ............................. CCCCCCTCATAGGCAGTGCGCGGGCAGCCCACCA 235427 29 96.6 32 .............C............... GACGGGACCTACGGCCGCCGGAGCGTCTGCGA 235366 29 100.0 32 ............................. AGGCGGGACTGGTACGACTTTGCCCCGACGAA 235305 29 100.0 32 ............................. TGGCCCGCACGGTTCTCGTACAGCCGGGTTCG 235244 29 100.0 32 ............................. AAGGCATGGTTCATACAGGGCAAGGCCCTGGA 235183 29 96.6 32 ..............C.............. TCAGGGAGCCGTTGAAGGGTCTCCAGGGGAAA 235122 29 89.7 0 ............CG.........A..... | ========== ====== ====== ====== ============================= ================================== ================== 9 29 98.1 32 GTGCTCCCCGCGTATGCGGGGGTGGTCCC # Left flank : GGGTGCCCTTGTCGACCAGGTCTTGGAGGGCGGAGAGGGTTGCTGGGTGGTTGGGGGGATCTGGGCTGGGCTGTGGGGGAGGCGGGTTCGGCTGAGGAGGCGGCTGGGCTGGTGGTCGGGTGGTTGGCTGGGGCGACGGAGCCGGGGGGCAGGGCTGCCGCGTCGGTGGCCAGGGCTATGGGCAGGGTTAAGGCGAGGGTGCGGGTGGGGTGTTGGGGCATGGGGCGTCTCCTGGTTGGGGAGGGGCGGGGTGCCTCTCGGGGACCAGAAGGCTTGGGGGTGGGCGGGGGGTTGACTGGGATTGCTATGGCGGGGGAGGGGGCTGGGGTGGCTTTTCCGGTTTCTCGCTGGGTTGCGGTGGGGGTTTTGGGGGGAGGATGGGCGGGGCTCTCGATGGGGTCGGGAAGGAGGGCGATATGCCCAGTTCAGGGCAATTGCCGGAATCTGGCAAGCTTGCAGAGATGGGGTGTGGGGGCGGCTAACGCTGCAGGTCATGGAGG # Right flank : AAGCGGTCGGCCGCGTGCCCCGTCTCGGCGTGCTCCCCGCCGAGGCGGCCCCCACCCCCTTCGAGTGATCCCCCACCCCCCAAGTGCATCCCCCCACCCCCCGGGCAGCCTCCCTCAGGGAGTTCGTCCACCCGAGAGGAAGCACCGCGTGGGACTGTCACGGAAGTACGCCGCTATCACCGAAGGGCCGACCCCGGCCGATGTCGCCGGGCAGGCTGCCCTGCCCTACCCCGACGGGTGGGCTGCCGTCGCCTTCTCCGAGGAGCTGACGAGAGGGAAGGTGCTCACCCGGCCGCTCGCCGGGGAGGACGTCGTGCTGTACCGGCTCGGGACCGGTGCTCTGCGGGCCGTGAAGCCCTACTGTCCCCACCTCGGCGCGCACCTCGGGCTCGCCAAGGTCGAGGGGGAGGACCTGGTCTGTCCCTTTCACCTCTTCGCGTTCGGGCCCGACGGGGCCTGTGTGCGGACCGGGTACGAGACAGCGCCACCCCGGTCGCCGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTATGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCATGCGGGGGTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 353983-354560 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKMX01000016.1 Streptomyces sp. SCA2-2 Scaffold2_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================== ================== 353983 27 100.0 34 ........................... CGAACCGCATCGGCATGTCCGTCACCGACCCCGA 354044 27 100.0 34 ........................... CCGACATCGTCAAGGCCCTCGGGGAAGAGGCGGG 354105 27 100.0 34 ........................... CCGCGGGTGGCCGGCACTCGGGCGGGGTCGACGG 354166 27 100.0 34 ........................... CCAGTCAACCGCTGAAGACTTCAAAGCTAAAGGA 354227 27 100.0 34 ........................... CCGCCGCGATGCTCGGCCGCCTCAACAAGCTGGC 354288 27 96.3 34 ...T....................... CCGACGGCGGCCGGATCTCCTTCACCGCCGACGA 354349 27 92.6 34 ...G......G................ CCGGCAGCCTTCACACGTACGGCACCGTGGCCGC 354410 27 85.2 34 ...G.A..........G.C........ CCAAGGCGGTCGTCCCGGACCAGGCGGCGCGGGT 354471 27 100.0 34 ........................... CCGTGACCGGCCTCGGCGTGCAGATCGCCGTCGG 354532 27 100.0 0 ........................... | GA [354557] ========== ====== ====== ====== =========================== ================================== ================== 10 27 97.4 34 CTGCTCCCCGCGCGTGCGGGGTTGGTC # Left flank : CGGGCGGTACGTGGACGACGGCCTGGCGATGAGCTTGCTCCGGGCGATGGACATGCCCCTGTCCCCGCGCGAGGTGCGGGTGCTGAGCAGGGCCGCACAGGGAGATTCGGTGGCGGAGATCGCGCGGGGGTTGTGCCTGTCGCACGGGACGGTGCGGAATTACATCGCTTCGGCTACGCGGAAGGTGGGGGCCAGGAATCGGGTGGACGCGATTCGGATCAGTCGGGCTGCGGGGTGGGTTTGAGGGGGGGTGGTGGGGGGTTGGGTGGGGTGGGTTTGGGGCTCCGCGGGTGGGGTGGGGTCGGGTGAGACTGCGGAGTGGGGTTGAGGTGTGAGTGGCTGGGAGGGAGGCTTCGCGGGGGGCCTGTCGGGTTCAATGGGGGGGGCGGGTGCTGGGCAGACACCGAGGAGGGGATATGAGGTATTCGCCCGCATTGCCGGGATCCTTGAAGCTTGCAGGAGAGAGTGACTGGGCTGGATGAAACCCCAGGTCAGCGAGA # Right flank : CGCGCCAACCGTCAGCGCTCCTGAGCGTGTCCACCCCCCGCCCACGACGAGGTCGACGCGGTGCTCCGGCTCCCCACCGCCGAAGGCTGCCCCAGCCCCGCCGCCAGTTCCCGATACAAGGCCGACTCCCGAAGCAGCGCGGCGTGGGTTCCCAGGTAAGGGGTCGCCCCGTCCAGAAGCAGGACGCGCTGCCCGGGACCAGGCGCCGGGAAGTGATGGCTCACCGTGATGACCGTGGCCGGGTGGGAAGCGAAGGCAAGCTCTGTCGCAGCCCGCGCCCCCGCGTCCAGATGGGCCGTGGGCTCGTCCAAGAGCAGCAAAGGCGTAGGCGTGAGCCAGGCCCGTGCCAAAGCGATGCGGCGGCGTTCGGAAGGGGTGAGGTGGTCCGGGCGAAGAGGGCGGGCCGAGTCAGACGCGAGAGGGGCCAGGGCGAAGGTGTCGATGGCTTCCGTGATGCGGGGGGCGGGGGCGTCCGGGGCGAGGTAGGTGAGGTTGTCCCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGTTGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGTTGGTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 72103-71889 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKMX01000005.1 Streptomyces sp. SCA2-2 Scaffold14_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 72102 30 100.0 32 .............................. CGCCGAGCCGGAGCCCGGTGGCGTCCAGGGCC 72040 30 93.3 31 ............................TC GTCCGGATTTGCTGGGCGAGGCGCACTCGGA 71979 30 100.0 31 .............................. AGCTGGACGAGTACATGCAGGTCGTCGGCAA 71918 30 63.3 0 ...T.......AC.C...AA..C.AG..TC | ========== ====== ====== ====== ============================== ================================ ================== 4 30 89.2 32 CTGCTCCCCGCGTGTGCGGGGGTGGACCCG # Left flank : CACTGAGGTTGTCTCGGCGCGGGGGCCGCGAGCAAGGCCCGGGCTCACGGGGCCGGGCCGCTGGACGCCGTGTCAGCTTTACCCGGGGCTGTGCTCCGGTCGCCTTGCGGTTGTGGCGACTTGGCTGCGACGGGAACACTCCGTCCCGGCAAGCTTTATCTCGGCGGCACCTGGGGGCTGAGGGAGAGCCCGGCTGGCGGCGGGCTTGGGCGTCGGGTGTCCTTCTCGACTCCGCTACGGCTTTGGCTGGGCAGCTCACCTGTACGGAGACGGGTCGCGCCGGCTACGACCGGGCCCATCCCCGGGTGCCCAAGGGATACATGCTCCGGCCGTAGCGCCGGGGCTCGGTGCTCCTGCCTGCCGATGACTGGGATGGCCATGCGTGCAGTGCTCTGCGGGGAAAGCCCGGCAGCGGGGGAGGAATGCGGACGGCGGAGGCTAGGGTGGCGAAGTTGGCGTGGAACGGCGACTTGCCGAGGTGAAGACGCAGGTCAGGGAGA # Right flank : CCGGGCTCCAGCGCCCTGGCCACGAGGAGCCTCGCCCATGGCCCTTGAGCCCGCAGAGCCACGCCCGTAGCCCCGCCATGAGACGGAGCCGCGTCCTCGACCGACCTGAGCATCGACCGGGTAGGAAGAGGCGAACTGGGTGCCATCGGAGAGGACTTCTGCGATACGGGTCGGGGGCCTTCACCTCGCAGCGCCCTCTCGCCGCCCGTACGTAAGGCGCACGATGCGGTCCGCTGGACGAAAAACGCAGGACGAGCCCGTCGAGACTGTCCCCGGACCTTCGCCAGCCCCGGTCAGAAGCGTCTAGCCACCCGCTAGCCTCGCCCCCGCCTCTCCGGCCAGCGGTCACGCAACGCCCATAAATACCTCTGCCACGTGCTCGCGGCAGGTAGCGCACCCGGAAGCTCCACCCTGCCCCGGACCTGTCAAGCCGGAAGCGCGACCCCTGGGGCAGCCCAGGCGAGGCCCCCCGGCCAACCCTCGCGCCCCCCCCACCGCAG # Questionable array : NO Score: 5.32 # Score Detail : 1:0, 2:3, 3:0, 4:0.46, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGTGTGCGGGGGTGGACCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGTGCGCGGGGATGGACCCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //