Array 1 216369-209261 **** Predicted by CRISPRDetect 2.4 *** >NZ_QFDC01000001.1 Shewanella algae strain Sh392 NODE_1_length_367520_cov_130.91_ID_9009, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 216368 29 100.0 32 ............................. GTAGAGAACGCCCTCGGCAACGAGATCACTGT 216307 29 100.0 32 ............................. GTTGATTGGAACCACATCGTACGTATGGTCAG 216246 29 100.0 32 ............................. TGACCGCAGACTACTTCTTCGAGAGTTGGAAA 216185 29 96.6 32 ............................T TTCTAATACCCGCCCGGCCTTGTGCCGGGTTA 216124 29 100.0 32 ............................. CTACCGGGGACGCGAACACGACAGAGGCTTTC 216063 29 100.0 32 ............................. TGCTTTCCGGGGTAGTATGCAGAGCATCCCGG 216002 29 100.0 32 ............................. GTCTGTAGATATAAAAATATCAGAACAGAGAG 215941 29 100.0 32 ............................. GCATTGACCTTGTTATAGCTGGTTCGCCTTGC 215880 29 100.0 32 ............................. CATTTTAGCCTTGAGCTCATCCTCTAAATCAA 215819 29 100.0 33 ............................. CCTTGCTTTTGTGCGCTTTTCGCTGTCGAATCC 215757 29 100.0 32 ............................. TCGCACTTCCCTGTGCTTATCCCAAACCTTAG 215696 29 100.0 32 ............................. CCGGTTGCAAAGCCCTCGACGATGGCGATCAT 215635 29 100.0 32 ............................. ACAATTGGCAGCTGCGGCATTTCGCCTGCTTC 215574 29 100.0 32 ............................. CCTATTTGATGATTGGCAGGCCGAGCGATGAA 215513 29 100.0 32 ............................. GACAGAAAATCCTGAAAACAGACGGCGGCAGC 215452 29 100.0 32 ............................. GGTAACGATGTGATTTACGCAATGGATAGGCA 215391 29 100.0 32 ............................. GCTGATATATTTTCGGTTGCGCCTTATCAACC 215330 29 100.0 32 ............................. ATTGAGCGTGGCTATGATATGCGTCTCAGCGT 215269 29 93.1 32 ...........G................T TAATCTCTATCGGATTATCTCGCTCTGTGCCG 215208 29 100.0 32 ............................. TAAGTAGTCAGCATCACCCACCAAAAACCACC 215147 29 100.0 32 ............................. TTGAGTTTGGAGCGGCTCAGTCCAGCTCTCAT 215086 29 100.0 32 ............................. CTGTCGGTTGATAACCTTGGTAGACCACTGAC 215025 29 100.0 32 ............................. GCCGCGCTGAGTTTATGGCAGACCTTGAGCGA 214964 29 100.0 32 ............................. CATCCGTACCTCTGCGTTGTGCCTGTGAAGTG 214903 29 100.0 32 ............................. CCACAATTAAGTGGCTTTGAAATTTGGCGGGC 214842 29 100.0 32 ............................. GCGCAAATAACTCTCGATTTCTGCGTAGCTTA 214781 29 100.0 32 ............................. CCGTATCTACGAAACGTAGGGGCTAGCGAACC 214720 29 100.0 32 ............................. AAATAATAAAAGGTATGACCAAGACCACTTAA 214659 29 100.0 32 ............................. CCATTTATTGCAACCACCGTCACAGCTCTGGT 214598 29 100.0 32 ............................. CCAATAACGAGAAACGGGTTTACAAGGCGCGC 214537 29 100.0 32 ............................. GCATGGCTCAATGATTAAATCTGCTGCTGTCA 214476 29 100.0 32 ............................. CAGTAATGCCGATATCGTCACTTATCGGCATT 214415 29 100.0 32 ............................. CTGGCAGCGCTGTTATTATGGATGACGGCGAA 214354 29 100.0 32 ............................. ATAGTTGACCGCATTGCAGGCACCGACTGGTT 214293 29 100.0 32 ............................. AGTTATGGAACCAATGGCGCGAAGATTCAGTG 214232 29 100.0 32 ............................. CCAAAACGAATAGTGGCCAATATTATCGCAAG 214171 29 100.0 32 ............................. CTTTACGATTTAACCATGGTTGAAAAGTTTAT 214110 29 100.0 32 ............................. CAGCCGCCCACTGAGGCGGCTTTTCTTTCAGA 214049 29 100.0 32 ............................. AGCAGCGAATGCGCCAAACACTCTCAGATTAA 213988 29 100.0 32 ............................. TCAAACGAGCAGTATCAAGAACCAGAGATGCA 213927 29 96.6 32 ............................A TAGCTACGGTTTTTCATAGCGTCGATTGCACC 213866 29 100.0 32 ............................. TTTAAATATCTTGTTAACGTGGCAGTTTTGAC 213805 29 100.0 32 ............................. GAATTGACCGCCGAAGCTCGTCGTGTAGCCAA 213744 29 100.0 32 ............................. TTAGTGGACGGGTTGATTTAACGATAATTCAC 213683 29 100.0 32 ............................. GATTTACAGCTGTTGGTTACAAAGTTGCAAAT 213622 29 100.0 32 ............................. TAGACGGCACCCCAATTGGTACCCGTGCAACC 213561 29 100.0 32 ............................. CAGTAACTTCTTCATACTCGTCCCTTAAAACA 213500 29 100.0 32 ............................. CGAGGTCTGGGGATGATGATGGGCGTTTTATC 213439 29 100.0 32 ............................. GCCTGGGCGCTATCTTCAATCAGATTGATTTA 213378 29 100.0 32 ............................. TCCTTAATATTATCGACTTGAGTGCCGGAGGC 213317 29 100.0 32 ............................. GTTCCAGTCTATAATGGACTTGATGCTGTTAG 213256 29 100.0 32 ............................. AAAACCGAAATGACCGACGAAGAGAAGAAGGT 213195 29 100.0 32 ............................. TGGGCTTTATTTTGCGCAATAGTTTAAATAAA 213134 29 100.0 32 ............................. CCAAAACTAAACAAAACCGGCCTGCCATATGG 213073 29 100.0 32 ............................. ATAGGGCAGCAGTCAGGCCATAGACTGCAAGC 213012 29 100.0 32 ............................. CAGTGACTCAATTATCATGAATGACGATTGCG 212951 29 100.0 32 ............................. GCATCTATATAGGGTTTGCCGAACTTGATAGT 212890 29 100.0 32 ............................. CCGGGATTGGGTTGCGGTCAGAGTCGGCGCTG 212829 29 100.0 32 ............................. CTTTATGTAACCACCGCTGGTGAAGTGTCCAA 212768 29 100.0 32 ............................. ACTTTGCCTTGGTCGAATTCCTTGATAACCAG 212707 29 100.0 32 ............................. TCACCCCCGTTAAAGTCACAACGCCTGTAGGT 212646 29 100.0 32 ............................. CACATATGGCTTATAGGATGCACGTAGTGGTG 212585 29 100.0 32 ............................. CAGTGATGGTTGTAGTCACACCTGACAGTAAC 212524 29 100.0 32 ............................. GATATTCAGCAGGGCATCTTAACTGCTTCTCA 212463 29 100.0 32 ............................. CTGGGTGACTTCTTCCAGGTCAATTTCGAAGT 212402 29 100.0 32 ............................. CGTTCATCCTACGTGCTCAAAACCGTGAAGAA 212341 29 100.0 32 ............................. GTGTTGAGACATGGGGAAAATTAAACGAAAAG 212280 29 100.0 32 ............................. GTTACTGGCGCTGCTGATGCCACCTGTTGGGA 212219 29 100.0 33 ............................. CGGTCGCATGGTACGGTATCACGCCGACCATGC 212157 29 100.0 32 ............................. GTGTGAAACCAGGCGACACTGCTACACCGGAG 212096 29 100.0 32 ............................. CCGGTCGAGCTAGTGGCGAGATGGCAATCCGG 212035 29 100.0 32 ............................. GTGCCGGTATTCAAGCTCCCTGTCAGGTAGTG 211974 29 100.0 32 ............................. TCTGCTCGATTGTTACCCGGGGATTGGTCATG 211913 29 100.0 32 ............................. GCCATCAAATTCGGCATTTAGGGATTGTGATA 211852 29 100.0 32 ............................. CGCTGCGTTTCTCGAAAAACGCTTAGCTGAGC 211791 29 100.0 32 ............................. ACTATTGTAATTAACGAAGAGTTCCGCAAGGC 211730 29 100.0 32 ............................. GATAATGTCTAGGCCATGCTGAGTTAGGTAGA 211669 29 100.0 32 ............................. AGAGAATGTGTTATTCGCCCTGCCACGCTCAA 211608 29 100.0 33 ............................. CTGAGCCAGTTAACCTTGATGGGTTGCGTGAGC 211546 29 100.0 32 ............................. TCTAATCAACAAATTTATAGTAGCACAACGGC 211485 29 100.0 32 ............................. ATTCAGAGAGAGCTATTCTGCATCGGCGTTGG 211424 29 100.0 32 ............................. GCTTCTGAGCGCATCGTTGGCGGTCAACAGTC 211363 29 100.0 32 ............................. GGTTCCACTCTTAGCCCGGGCGGCTATACCCG 211302 29 100.0 32 ............................. TTAACGGTAGAAAAAGCGCCACCGGGTATTAC 211241 29 100.0 32 ............................. TTGGCTCACTAGGCACTGTCGCAGGTGGCACA 211180 29 100.0 32 ............................. ATGGTAGCTGCCAAGGAAAAAGACCTGGAGCA 211119 29 100.0 32 ............................. TCAAGGCAGAAGTCACAGACGTGGAAACCGAT 211058 29 100.0 32 ............................. ACAGGGCATGTACCGCATCAATAGCGGCAAGT 210997 29 100.0 32 ............................. CCAAATCATGCGCGATAACCAATGGGCCCAAG 210936 29 100.0 32 ............................. GATTCTGTGGAGTTTAGCTATATTGACCCAGA 210875 29 100.0 32 ............................. TGAAGCAAATGGGCCAGAATCCTCGGCTATAA 210814 29 100.0 32 ............................. GAAATTGAGGAAGAGCTTGAGCGCATGCCACC 210753 29 100.0 32 ............................. TGTTAATGATAGCGGATGTTATTGCAGAGGCT 210692 29 96.6 32 ............................A TCAACGGTCTAGAGATCGTGACTCGCCCAACC 210631 29 96.6 32 .T........................... CAGATGCCGACCGGTAGATCGCTTGTCTTGTC 210570 29 96.6 32 .T........................... TATCGCTACTTGCTGCCGAGGTTGGAGGAAAA 210509 29 96.6 32 .T........................... CCAAATGCGCGAGCCTCGGCCAGCGTTTTCAT 210448 29 93.1 32 .T..........................C ACATGGCACGTAATTCAATCAAGCTTCCCAGC 210387 29 96.6 32 .T........................... TAACGAGACCTGCGCTGAAATTAACAGACTAT 210326 29 96.6 32 .T........................... GTTCATCGTCTTCGATATCCTCCCAGAACTGT 210265 29 100.0 32 ............................. GATATGTATGTCGGCCTGTGTCGTATGGAAGA 210204 29 100.0 32 ............................. ACCCACTGGCAGTAGAGGCTTGTTTTGAGGTC 210143 29 100.0 32 ............................. CCGACAACGGTGGCGGTAAAGAGCCACCTAAT 210082 29 100.0 32 ............................. CGGAGGCCCCCGGTTTTCTTGGCGGCGGCCAG 210021 29 96.6 32 ..................T.......... CGCGTAGGTAGCCTGAAGGGCGCGAGGCAATT 209960 29 100.0 32 ............................. ATCTCCCCGTGGCATGGCTTGGGGGAGCAATA 209899 29 96.6 32 .T........................... TAACAATCGTTTCATAGCTTGCCCCTTCTACA 209838 29 100.0 32 ............................. GGTTGGCCTGCAACTCAACCCCGTATCTAAAA 209777 29 96.6 32 ..........T.................. CAATTATCAGAGGTGATAATTGCTGTGTTTGA 209716 29 100.0 32 ............................. CGGCAACAGTGGTCAGGTCTACAGCAGCGAAA 209655 29 100.0 32 ............................. GCGTTCGGCATAGCTAACGGTTTTGTCTCGAA 209594 29 100.0 32 ............................. CTGTGCCCACGCTGCAAAGAGTACTGGCCCCA 209533 29 100.0 32 ............................. GCCCCAGTTACGCCAATAGCCATTACCTAGGC 209472 29 96.6 32 .T........................... TATTACGGCCGTAACACTGCTGTAGGTGTGCT 209411 29 96.6 32 .T........................... TTACCGAAGAAGAGTTCAGAGCAGGGTTTTAT 209350 29 96.6 32 .........A................... ACTTTTAGGAAAGCCGAGGAATGTTGGTTCCT 209289 29 89.7 0 .T........................GT. | ========== ====== ====== ====== ============================= ================================= ================== 117 29 99.4 32 GAGTTCCCCGCACCCACGGGGATAAACCG # Left flank : GGTACTGGCAGCCGGTGAAATTGAGCCGCCTCCAACTCCAAAGGATGCCCAGCCCATTGCTATACCAGAGCCGAAACCGTTGGGAGAACAAGGACACAGGAGCCAGTAACTATGAGTCTGTTGGTTGTGGTGACCGAAAATGTACCGCCTCGCTTACGTGGTCGTTTGGCCATCTGGTTACTGGAGGTGCGTGCCGGGGTTTATGTGGGTGACACCTCCCGCAAGGTGAGGGAAATGATTTGGTATCAAATCAGTGAATTGGCAGAGGAAGGCAATGTGGTGATGGCCTGGGCCACCAATACAGAATCAGGATTTGAATTTCAAACCTTGGGTGAGAATCGTCGTATGCCGGTGGATTTGGATGGTCTGCGACTGGTCTCATTTTATCCAACTGAAAAATAACAAAATATTGCTCTTTAACAACTTGGAATAATAGCCTAAAAAGTTGGTGAATATTTTTAAGTGAAAAATCGCTTAAAAAACAATAGTATTTACCAAGA # Right flank : TATTTCTTTACTGTACAACCCCAGCAAAATCCGAACGTCCTGCATTTGTGGGGCTGAAGAGGCCGAAACTGAGGAGATCTAAATAGCGGCCCGGCTCAAGGCAGCATATCTACTCGAAGTAGTCTGCTGGCGCTGCGGCCTTTGTCGTCGCTGACCGATAACTGGAAGCGTCCGGCTCTGGGTGGGCGCCATTCCAGGGTTTGTCCCGGCAGGCTCTGGCCGAGCAGGCTGTTACCGGCAAACCAGTAGAGTATTTGGCTGTCGGAGGCGGCGTCGGCCTTGAGGGCGATGTGTTCATTGGCCACGCTTTGGCGCAGGCTGTAGGTGACGCCTTTCAAGGGAGAGCGGATAAGCGGGGCCGAGTAGCTGACCGCGACTCTTTGGCTGCAGGCGGCCGGAAGCTCCGGCGGCCTCCTGCGGGGTAAACCTGCCTGCTCGAACAGGGCCGCCAAGTCTGACGGCCAGAAGGCAAACACCTCCTGGTGGTGAATTGCCGAGTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCACCCACGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGTACCTACGGGGATAAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.00,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //