Array 1 1396-39 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGVQZ010000097.1 Listeria monocytogenes strain 7546 7546_NODE_85_length_7615_cov_68.886932, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 1395 36 100.0 30 .................................... TCGTGATTTCTTCCTCATGCGCGCTTTTGA 1329 36 100.0 30 .................................... TTATCAGCAATTGAAACTATTAAAAATGAC 1263 36 100.0 30 .................................... CCTAGACCTAGATGCTACTAGAGTGGACGA 1197 36 100.0 30 .................................... TAATGCATCTTTATATTGATTTACCTCACC 1131 36 100.0 31 .................................... TGGAAATGAACGATTGTCGGCATTCACGAAT 1064 36 100.0 30 .................................... AGATATGGGCGAACTACCCGACGACAACAA 998 36 100.0 30 .................................... GAAGAAGTCACTAGTTGGGTCAAGCAAGGC 932 36 100.0 30 .................................... TAGTGCCAGTAAATTCAGTTCCTCCAAAGG 866 36 100.0 30 .................................... TGTAAATGCGTTTAAATCGATGGGAAGCGC 800 36 100.0 30 .................................... ACACGTGTGGAAGAAGAGGGCTCTGACGCT 734 36 100.0 30 .................................... GTATGAAACGGTTAAATGGATCTCTATAGC 668 36 100.0 30 .................................... ACCAAGTCTAAGTGTAGACTGGCGTGCGCA 602 36 100.0 30 .................................... TTTAATGATTTTCTTTTGCGCGCCGTTGGT 536 36 100.0 30 .................................... GAATTTTTTTGTAAGATCGACAACTTTTTC 470 36 100.0 30 .................................... TTGATAATGATAAGGCTGTACGGATTATTC 404 36 100.0 30 .................................... TAACAGTGTATTTCTATTGCTCGGTGTGTT 338 36 100.0 30 .................................... TGGAGATAACGAAGAGTAAAGCGAGGCAGC 272 36 100.0 30 .................................... GCGTTGAACCAGAAGGTGGGAAAGAAACAC 206 36 100.0 30 .................................... TGGTAATTTAGTATCTATTACGGCTGGGAA 140 36 100.0 30 .................................... AGTTCATGCAGATGTTCCAACAGACTATGA 74 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 21 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAGCTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACCGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : CAACAGCTCGGTTCACAGCCCAAACAGGCGAGTTTTAGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 400-48 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGVQZ010000037.1 Listeria monocytogenes strain 7546 7546_NODE_20_length_28490_cov_92.160370, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 399 29 100.0 36 ............................. TCTTTAGTTGTTACTTGTTGGTTAATGAGATCTACC 334 29 100.0 36 ............................. TGCTCTCTTTTGTGTAAAGCACATCAAGCATGTAGC 269 29 100.0 35 ............................. GCGATTTTTGTCAAAGGGACAGCGATGGGTTACAA 205 29 100.0 37 ............................. TTACCACCAAAGTCCCTACACTCAATACCACCAAAGC 139 29 100.0 34 ............................. TTTTCTACTCCTGCTTCTAAAATGTCGTTTATAA 76 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 6 29 100.0 36 GTTTTAGTTACTTATTGTGAAATGTAAAT # Left flank : CGTCCGTGCCACTACTTCAGCTGATATTTTACTTGAAAAAGGTGCCGTAGAAGTTATCGCTTGCGCAACCCACTCCGTCATGGCTGGAAACGCAACCGAACGCTTACAAAACTCCAATATCAAAGAAGTCATCACATCCGACTCCATCGATCTTCCAGAAGACAAGCAATTCGACAAACTAACAACCATCTCCATCGGACGAATCTTAGGCCGCGCAATCGAAGGCGTACAAGAAAACCGCTCGTTGCATCCGTTGTTTTAAAGAATAAGCAGAAAACAGTAACTTAGTAGAGTTGCTGTTTTTTTGTTATCTGTCGACCTCGAGTAGCGTGAAAAATACCGGGGATCGACAGAAAGTTGTAAGTGGTTGGGGTGGAAGAAGTTTGGCGGTATTTGCTTGGGGGAAATCTTCCGGATAAGAGGAGATTTTAGATGTTTTTTGGTAGGTCGACAGAAATAGCTCTTTGAGGTAAGATGGGAGTAAGAAGAAAAGTTAGTGG # Right flank : TCTAAAACATCCTTCACTGTATCAACTCCTTTCTATATGTTAGTTACT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAGTTACTTATTGTGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 368-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGVQZ010000142.1 Listeria monocytogenes strain 7546 7546_NODE_45_length_293_cov_203.941986, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 367 36 100.0 30 .................................... AACAGCTCGGTTCACAGCCCAAACAGGCGA 301 36 100.0 31 .................................... TAGCATCCCTTTGTTGAAAACATAGTCTGAA 234 36 100.0 30 .................................... TTAAATTTCCCTTCTAACACTATCTATCAA 168 36 100.0 30 .................................... ACGTGATGGTCCTTGGAAAAGGAGATTACT 102 36 100.0 30 .................................... TAGTTTTTCTTCGTCCTCTAAACGCAAGCT 36 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 6 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : | # Right flank : C # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //