Array 1 8556-6758 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMHN01000030.1 Escherichia coli strain MOD1-EC6553 MOD1-EC6553_30_length_57075_cov_27.6099, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8555 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 8494 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 8433 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 8372 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 8311 29 100.0 32 ............................. GGATTTTCTTTGGTGGGGAATGCCCGCCGTGT 8250 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 8189 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 8128 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 8067 29 100.0 32 ............................. GGAATAATTACCGCGCTGATTAAATTAATTAA 8006 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 7945 29 100.0 32 ............................. CGCTTTTGCTCAGTAGTGAGTGTGATTTCATC 7884 29 100.0 32 ............................. CAGGTACAGCCGTTTCGGTGTTTTGTTTTTGT 7823 29 100.0 32 ............................. GCGTCGCTGGAAGAACAAAACCGCCTGATCGA 7762 29 100.0 32 ............................. GCACCACGCGTACCCCGATGTTTGTTTTGCCA 7701 29 100.0 32 ............................. ATCCGGCTATATCTTTGAGCATTACAGAAATA 7640 29 100.0 32 ............................. CTATTGCTTTCGTACAGATTTTCAGTGGTGCT 7579 29 100.0 32 ............................. AAAATTCTGTGTTTCGACCATTACTTCGGTAA 7518 29 100.0 32 ............................. ATTCTTGATCACGCTTTTACCGAAGTAATGGT 7457 29 100.0 32 ............................. GGGGTAGAATTATTCTTCGTGAGCGATTTATC 7396 29 100.0 32 ............................. CGGCGTTCCGTGCGGCAATTGGAATCACACCA 7335 29 100.0 32 ............................. CGTTCTGAATCCGATATTCTTCAGCACCTTCA 7274 29 100.0 32 ............................. AGCGTCAATCAGCGCGTCTATCGCGTCACTTT 7213 29 100.0 32 ............................. ATTTGGGGGTATGAGAGCGCCGAGCCGTTCGG 7152 29 100.0 32 ............................. GCTCCCTGTCAGTTGTAATCGATAACGTTGAT 7091 29 100.0 32 ............................. ATGTAGGGGCAATCGAACGATTCTCTGCCGAC 7030 29 100.0 32 ............................. CCGAGCCCGATTATCGGCATGAGCGATGCGGA 6969 29 100.0 32 ............................. TCGAAGAAGAAAGGGAAATAATGCGAGGAACG 6908 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 6847 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 6786 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 30 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTACGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8714-9961 **** Predicted by CRISPRDetect 2.4 *** >NZ_NMHN01000012.1 Escherichia coli strain MOD1-EC6553 MOD1-EC6553_12_length_104352_cov_29.6822, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8714 29 100.0 32 ............................. CCCCTTGACCTTAACGCCGCGTTTAGCGTCAT 8775 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 8836 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 8897 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 8958 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 9019 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 9080 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 9141 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 9202 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 9263 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 9324 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 9385 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 9446 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 9507 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 9568 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 9629 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 9689 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 9750 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 9811 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 9872 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 9933 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //