Array 1 378442-377496 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYUJ01000001.1 Salmonella enterica strain BCW_6586 NODE_1_length_836571_cov_0.408005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 378441 29 100.0 32 ............................. ACATTCTGGTCTACGTTATCCAGTTCGCCAGC 378380 29 100.0 32 ............................. ACGAGTTTCTGGCCCGCCTGCCCGGGTTGCAG 378319 29 100.0 32 ............................. TCACACGTTAGATCAACAGTTGTGTCCGTATT 378258 29 100.0 32 ............................. GGCCTGATGAAAATTGCCGATAGCATGGACAA 378197 29 100.0 32 ............................. CAGTCTGCGGGGTTTCCTGCGTGTAATGAAGT 378136 29 100.0 32 ............................. GGAAAAAACGCTTGTCGCCAAGTATGTTTTTG 378075 29 100.0 32 ............................. CACAGAGTTAAACGCCGCTGCAGCGCTGTTTA 378014 29 100.0 32 ............................. TTTTTATCACGCTCAGACCTGAAAACAACCGA 377953 29 100.0 32 ............................. TTCCATATTCAGGATCATATCCGCACGATAAC 377892 29 100.0 32 ............................. CCTGACGCCAACGGAAACGTGAAAGTCTCAAC 377831 29 100.0 32 ............................. TGTTCCCCCAAGGTTCAAAAATTCAATATGAG 377770 29 100.0 32 ............................. ATTGTTGCGCCACCAAAATTTTGAGCGCCACG 377709 29 100.0 32 ............................. CCGACATGGGCAGGATTGCTGACGTTAGTCGA 377648 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 377586 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 377525 29 96.6 0 A............................ | A [377498] ========== ====== ====== ====== ============================= ================================= ================== 16 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGTGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCTTGGGCGAACAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGTACTACATCGCGGCTACGGTGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 396193-394701 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYUJ01000001.1 Salmonella enterica strain BCW_6586 NODE_1_length_836571_cov_0.408005, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 396192 29 100.0 32 ............................. CTGTCCTTTTTCATGTTGATGACGTCGCCCTC 396131 29 100.0 32 ............................. TTGTTACGAGGCGTCGAAACCTCTTACAAGCG 396070 29 96.6 32 ............................A GCAGCGCACCACGCAGCAGGAAAGTTAATCCC 396009 29 100.0 32 ............................. GATCGTGTTTTTTTAGCAGCGTCATCGCGCCA 395948 29 100.0 32 ............................. CTGTCAAACTGGATCCCCCTCATCATCATTGC 395887 29 100.0 32 ............................. GCACATCTGAATATTTTACAATAAATTCACCA 395826 29 100.0 32 ............................. AAAATTATTATTTTTGCAACTGCAATTCTGCT 395765 29 100.0 32 ............................. ATTGCTGTTTATTCGCGGCTGATTGCGCCGTG 395704 29 100.0 32 ............................. GAACAGGCCCAGGCTGCGCAGCAGCAACAGAT 395643 29 100.0 32 ............................. CTGTAGGGGCGCTGGTGGCCGCTGCGGTGGTT 395582 29 100.0 32 ............................. AAATCACAAAGCGCCCAGGGGGAGCAAATAAC 395521 29 100.0 32 ............................. CCTCCTTACTGACGCTGTGTGCCTCCTCTATC 395460 29 100.0 32 ............................. TTTTTTCAGAGGTTCGCGCCGGGATGCGCAAT 395399 29 100.0 32 ............................. TTGTCGTTAGCCCCCCAACTTATATTAATGGA 395338 29 100.0 32 ............................. CATTATGGTAAAAATAAATTTTTCCAAATAGA 395277 29 100.0 32 ............................. AGTACGAGGCACTATTCGGCAAGAAACCGCAC 395216 29 100.0 32 ............................. GGGGCATGTGCGAAATTTCGCTCCAGTTTGTT 395155 29 100.0 32 ............................. GCGCTTCCGCCAACTCTCATCCGTGAAACGGT 395094 29 100.0 32 ............................. CGCCATAAACGCGACTCCGTCACACATCCGTA 395033 29 100.0 32 ............................. ACGCGTTAAAACTGCGCTCAATGCAGACGGCC 394972 29 96.6 32 ...........A................. CGGTTCGCCCGCTGCTCAGTCTCGCCGGAATG 394911 29 100.0 32 ............................. CGCCGGTTTCGGTGGGGGCTGAATCCTGAACC 394850 29 100.0 32 ............................. TGGGACATTCTCGCTAGTCACGGTCATGTCAT 394789 29 100.0 32 ............................. TGCGCCAACGACTGGAATTTTTGCGTGTAGCC 394728 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 25 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //