Array 1 1584627-1585852 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022188.1 Azoarcus communis strain TSNA42 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1584627 32 100.0 35 ................................ GTGGTCGGTCGTTGCACCGCGCGCGTTGCGCGCAT 1584694 32 100.0 34 ................................ CCGGCCGATGGCATCACGCTCGCCCGCCCGCCAG 1584760 32 100.0 35 ................................ ACCAGCCGCAGTTCCGAGGCGACCTTTTGAACCAT 1584827 32 100.0 34 ................................ ACACCGATGTGCGCAGGTACATCTCAAAGATGGA 1584893 32 100.0 34 ................................ AAGGCGATCTGGCGCAAGTGCGCGGCACGGACGC 1584959 32 100.0 34 ................................ ATATGCTGCGACAGAGCGTTCAACACGTCTGCAA 1585025 32 100.0 35 ................................ ATCTGCAACGCGAAACGTCATGCACAGAAGCTCAG 1585092 32 100.0 35 ................................ ATCGTGAGCAACCCCGCTACAAACATCCAGTACGG 1585159 32 100.0 34 ................................ AGCTACACGTTGCGTTTGTTACACGCAACAGGGC 1585225 32 100.0 34 ................................ ATCCCAATGTGCATCACGAATGACATATACATAG 1585291 32 100.0 33 ................................ ATCAGATAGCCGATGGCGTTGCGCTTGACCGTC 1585356 32 100.0 33 ................................ ACAAGCAGCGCATCAAAGTCATAGGCGAGCACA 1585421 32 100.0 33 ................................ GCATCCGAGCAAGCCATCCGGTACGGGCAGAAG 1585486 32 100.0 34 ................................ CTCTGAGGGAGTCTCAGATCAATCTCGGCCATGT 1585552 32 100.0 35 ................................ ACTCCGCTGGTCGCATCGCGGTTGAGTGTGGTGTC 1585619 32 100.0 36 ................................ GAGGCCATGCGAAAGGCCAACCGCATCCTGTTCGAA 1585687 32 100.0 36 ................................ TGCGCCCTTGAGATCGCCCTCATAGCCCTTGATCAC 1585755 32 100.0 34 ................................ CTCGGTCACGTGGCCAAGTTGCCGGGTTGGGTGA 1585821 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 19 32 100.0 34 GTCGCGCCCCGCGTGGGCGCGTGGATTGAAAC # Left flank : TTTTCTCTGGAAGTAGGGTTTCATCATGATGGTCCTCGTTAGCTACGACGTGAGTACGATCACAGCGAGCGGACAGAAACGCCTACGGCGACTGGCCAAGGCGTGTCGCGATTACGGCCAGCGCGTGCAATATTCCGTGTTCGAGATCGAAGTGGATTTTGCCCAGTGGACCTTTCTCAAGAGCAAGTTGTGTGAGCTGATCGACCCAGAGCAGGACAGTCTGCGCTTCTATTATCTTGGTAAAAATTGGCAGACAAAGGTTGAGCATGTCGGTGCAAAACCGGTTCTTGACTTGAATGGTCCGCTCATTCTCTGAATAACGGCGCGAACCTGAAGCGTCCGGGAAAACCCCGGGAGGTTCGCAATAGGTCAAAGTCTCCCATTCTTCGAGTATCTGGCTGCAGATGTCAGCCTTTTACTCCTGCTTTACGGTAACTCTCACCAGAGTTCGCAGATATCCGGTATTTTTCGTATTGTTCTCATGGAGTTGTGAGGGCACT # Right flank : CAACAAACTGAGGTAGGTCGTCAATCGTGGAGTCCAACGGATTAAGCTGCCATCTGTTTTGCATAGTACTGCTGACTGAAAGCGGCAGGTGAGAGATAGCCAAGGCGTGCCTGCTTGCGTATGCGGTTGTAAAAGATCTCGATGTATTCGGTGATCTCACGCCTCGCCTGCTCGCGGGTGGCATAGGATTGGTGATGGACCAGTTCGTTCTTCAGAGAACCCCAGAAGCTTTCCATCGGGGCATTGTCCCAGCAGTCCGCCTTGCGACTCATTGATGCGCGCATGCCGAATTGCCGCAGCGATGTCTGATAGGTGTACGCGCAATACTGACTGCCGCGATCCGAATGGTGAATCAGCCCTTTGGTCGGTCGCTTCGCGACGACTGCTCGGAATAATGCTTTCGTAACCAGCTCTTTGGTCATCCGCTCAGCCATGGCGTAGCCGACCAATTCGCCGTTGAACAAATCCTTGACGCCAGCAAGGTATAGCCAGCCCTCATC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGTGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.30,-8.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 1587159-1587718 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022188.1 Azoarcus communis strain TSNA42 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 1587159 32 100.0 34 ................................ CAGTTCAATTTGTCAGGCGCTACAGCGGGATCAT 1587225 32 100.0 33 ................................ TGCGTTGAGGGATGCTCGGCGACGGCGCAGGGC 1587290 32 100.0 34 ................................ TGCTTGGTGCGTTGATCTGGATTTTTTTGCAGTG 1587356 32 100.0 34 ................................ TTCCCGCGAATCTGCGTCTCAAGAACCTGATAAA 1587422 32 100.0 34 ................................ GGTATAACGTCCAAGCCTGCGCTGCGGGTGAAAC 1587488 32 100.0 33 ................................ ATTGCAGCGCATCTCCACCGGATGCTGTGGTGA 1587553 32 100.0 35 ................................ AATCCATAGGCCGCCACGGCAGCCGGGGCAACGAC 1587620 32 100.0 35 ................................ GACAAACGATCGGGCGCAGTGCTGGGGTTGGACTG 1587687 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 9 32 100.0 34 GTCGCGCCCCGCGTGGGCGCGTGGATTGAAAC # Left flank : GGTGGGCGTTGGCGCCAGGCGTGATAGCCGCTCTCCGAAACACTCAGCAGCCGGCACATCACCGCCACAGGGTGGTGTAGTCGCAGTTGGTCAATCTGTGCGTACTTCACCGCGACTCCTTCGCGAAATACGCCGCACATTTTTTTAGCAGATCGCGCTCCAGCTTCACTTCCGCCAATTCCTTGCGCAATCGCGCCAGCTCAACTTCCGTCTCTGTCGGCAACCGTTGGCCTTGCCCCACTTTGGCAAGCTTGCCCGCACGCGAGGCCCTGACCCAGTTGCCAAGACTGCTCTTCGGCACCGAAAGGCGCTTGGCCGCTGCATCCACCGAAAGCCCTTCTGCCTCCACCAACTTCACTGCTTCCGCCCGAAATTCCGGCGTGTAAATCCCTTTCGGCATCCGTTCCATGTGCGTCCTCCGTTCGTGCAATTTTACAAAACGTTGGACTCCATTTTTTTCAGCCTACCTCAAACTGCAGGTGCGCATCTGATGGGCATTA # Right flank : CGTTGACGTGCGGTATCGCGTTTTGAGGTAGGCTGAAAAAAATGGAGTCCAACGTTTTGTAAAATTGCACGAACGGAGGACGCACATGGAACGGATGCCGAAAGGGATTTACACGCCGGAATTTCGGGCGGAAGCAGTGAAGTTGGTGGAGGCAGAAGGGCTTTCGGTGGATGCAGCGGCCAAGCGCCTTTCGGTGCCGAAGAGCAGTCTTGGCAACTGGGTCAGGGCCTCGCGTGCGGGCAAGCTTGCCAAAGTGGGGCAAGGCCAACGGTTGCCGACAGAGACGGAAGTTGAGCTGGCGCGATTGCGCAAGGAATTGGCGGAAGTGAAGCTGGAGCGCGATCTGCTAAAAAAATGTGCGGCGTATTTCGCGAAGGAGTCGCGGTGAAGTACGCACAGATTGACCAACTGCGACTACACCACCCTGTGGCGGTGATGTGCCGGCTGCTGAGTGTTTCGGAGAGCGGCTATCACGCCTGGCGCCAACGCCCACCCTCGTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCGCGTGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCGCGTGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.30,-8.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 4200627-4202335 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP022188.1 Azoarcus communis strain TSNA42 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4200627 28 100.0 32 ............................ ATCATCATTTTGTTGCCGATGGTCGTCGTATC 4200687 28 100.0 32 ............................ ATCACTGCGAGGCGTGCTCGGCGGTTGCTCTG 4200747 28 100.0 32 ............................ ATCGTGCGCGGATACGCAGAGATGATGAACGG 4200807 28 100.0 32 ............................ AGCAGGCACAGGACCGGCGCGACGCGAACCTG 4200867 28 100.0 32 ............................ CGCACCGGATCGACGCCGGGCGCGGTGCTGTT 4200927 28 100.0 32 ............................ AGGTTGCCTTCCGGCGTTGCAAACAGCATCGC 4200987 28 100.0 32 ............................ ATCATGGCTGGATCTGCAAATGCGGTCGCCAT 4201047 28 100.0 32 ............................ ACAGTCGTCGTCGTCGTGTCCCCTTCCGGGTT 4201107 28 100.0 32 ............................ GTTGAATGAATGGACCAGGGACCAGCCGCATC 4201167 28 100.0 32 ............................ GCGATCATCAACGACCACGGCTGCGAGGAGGA 4201227 28 100.0 32 ............................ AGATGCAGGACGAACTCGGCCCGCGTCAGGAA 4201287 28 100.0 32 ............................ ATCCGCTTCGCCTCGGGCTGGCGCGTCACGGC 4201347 28 100.0 32 ............................ AGGCACGGCTGGATGCGTGGCGCTGGTTAAAT 4201407 28 100.0 32 ............................ CAAAAAGCCCCTACATGATGCGCCATGACCCG 4201467 28 100.0 32 ............................ AAGCCTCTTCGCTTTCCATCTCGCTTCTGCAA 4201527 28 100.0 32 ............................ TCTCGCGTCATGGCTAATTCGACACTGCCGTA 4201587 28 100.0 32 ............................ ATATACACGTCATACTCACCCTGAGTGAGCGA 4201647 28 100.0 32 ............................ ATGTTGTAGCCCGTCGAGTAGCTGCCCTGGCT 4201707 28 100.0 32 ............................ TTCAGAAAAGCCAACCCAATCGGCGGCGAATT 4201767 28 100.0 32 ............................ AGTTGATACCGGAAGGGCGCGCGGTAATTGGG 4201827 28 100.0 32 ............................ TTGAACAGAGCCTGTTCTGGCGCGCATACCTT 4201887 28 100.0 32 ............................ TCTACGGTCATCGTCGCATCTGACGACCCAGA 4201947 28 100.0 32 ............................ GCGTCATGCACGACGCGGCCACCGCCCACGTG 4202007 28 100.0 32 ............................ AACAAGGCGGATTAACGGCGTCAGGCCAATGA 4202067 28 100.0 32 ............................ TTTATGACCGCGCCCGTCAGCGCCCGAAACCG 4202127 28 100.0 32 ............................ TCATTGGTATCACGCGCGCAAGCGCAAGCCGC 4202187 28 100.0 32 ............................ ACATGCGGATCAGGATCTCGCCGTCCTGCCCC 4202247 28 96.4 32 .........................G.. AGGATGCAGCTAACCTGGAACGCTGGATGCTC 4202307 28 92.9 0 ....................A......T | A [4202330] ========== ====== ====== ====== ============================ ================================ ================== 29 28 99.6 32 CGTCACTGCCGGACAGGCAGCTCAGAAA # Left flank : AGTCTGGGTCTGCTCATGCAGAACGGATGGACACAAGGTATGCGCGACCACATTACGCTCATCGAGCCACGTCCCATTCCAACAACTGTTCAGCATCGCGTCGTACGCAGAGTGCAGGCCAAAAGCAATCCCGATCGACTGCGCCGCCGGCTGATGTCCCGTAAAAGCATTGGTGCCGAGGAAGCCCTGACAGCCATTCCAGACTCAAGCGCGAAACGCCTGACGCTTCCCTACGTGGAGATGTCCAGTCGCAGCACAGGTCAGCGTTTCCGACTATTCATCGAACACCTGGCACCGCAGCCCGAGCCAGTTGCCGGTGGCTTCGGAACTTACGGCCTAAGCGACATTGCGACGGTCCCCTGGTTCTAGCCCCCTTTTTTTGATGCCACCTAAGGCCTTATTAAAAACAGTCACTTAGCCCTAAGGTTCGTTTTTAGGTAATCGGGCGCGTTTGCGCCCGATTTCTTTAACAATTAGTATCTTAGCGCGTCGTTGCTCTA # Right flank : TCACTCGAACCGCCCCTCCGATTCATGACTTTTCCTGATTAATCAGCGCCCAAAGAATCGTTTGTTGTGCACTTGCGTGAATTTCATAATCCGCCTCAATCGCACTGACCCAAACGCAGGCCAGTTGCGAAATTCCACCCAGGCAGACAGGAGACTCGCAATGAACGCACCGACCGAAATCCGCAACTTCAAAGTTTTCGAACTCAAGAACGTACTCAATCCGATTGAAGAAGCCGTTGGCCTTGGCAACGAGTTTTATACCGACGACAGCTATTTCAAGTTCGAGCGCGACCGCGTGCTTGCACAGGGCTGGGCATGCATCGGTTTTGCGAGTGACGTCGGGACGAACAACTACGTCAAGCCGATCGAGTTCATGGGCTTGCCCCTTCTGATGATGCGAAATCGCGACGGTGCGCTGCAGGTATTCCACAACGTGTGCAGCCATCGTGGAATGAAGCTGGTGCATGAGGCCGGTGAAATTCAGGGCCTGATCCGTTGCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGTCACTGCCGGACAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGGACAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //