Array 1 2084-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJQJ01000011.1 Listeria monocytogenes strain BCW_4295 PROKKA_contig000011, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2083 36 100.0 30 .................................... GCAATAGACCAGTTAGGTGTCACAGGTGCG 2017 36 100.0 30 .................................... GATAGTAGTATAATAACTGTGCTAATATGG 1951 36 100.0 30 .................................... TTCGTACCATAGTATACACATGCAGGGGCG 1885 36 100.0 30 .................................... CATATAGATGTTTCCTTTCTACTCGTATAT 1819 36 100.0 30 .................................... AAATATTATTCAATGCTGTAACTGTAAAAG 1753 36 100.0 30 .................................... TACTTTTATTGTCTGCTAAGAATACTACTA 1687 36 100.0 30 .................................... ATTGTACAAATTCCAAGTAACTCATCATTA 1621 36 100.0 30 .................................... TTTTTCACGTTTGTACTGTCTCTCCTCGTA 1555 36 100.0 30 .................................... TAACTTTAGATACTGCTAAAGAATTAGCAA 1489 36 100.0 30 .................................... TGTCTGAATGTAGTTAATATCTTCAACTTG 1423 36 100.0 30 .................................... CTTCAGTTTCACCTGTGAATACGCCGTTTA 1357 36 100.0 30 .................................... GCGCTTCAGTTTCAGCATTGGTCTTCTTAG 1291 36 100.0 31 .................................... TCTCTTGCATTTGGTTCTGAATAATCTCGTA 1224 36 100.0 30 .................................... AGAGCAATGTAGTCATTCAGCCAATGCCCT 1158 36 100.0 30 .................................... ATATGGGGGCTTATTGTATGGCTAATATAC 1092 36 100.0 30 .................................... ACGGGGCATTTAATGTTGGCAAGCGCAATT 1026 36 100.0 30 .................................... TCCTCAGATAAGGTTTAGTACGCAAGACTC 960 36 100.0 30 .................................... TCCACTTCGACGCTGGACGGGCTCTCCTCA 894 36 100.0 30 .................................... CAATGCTTGGGGCTATGATGGCATGGATAA 828 36 100.0 30 .................................... CTCTTTTCGATATTCCGGAAGAGGTACTCC 762 36 100.0 30 .................................... CTTTTGTGTCTTCGGTAGCTTTGTCCATTA 696 36 100.0 30 .................................... CCAGAGTCGCTTTTTCTTCCGGCCAGTCTG 630 36 100.0 30 .................................... GTGTGTTATCTATTTGTAGCGTGGGTGTAT 564 36 100.0 30 .................................... ATATACAATGTCTAAGCTTAATCTTTCGGT 498 36 100.0 30 .................................... GAAATAATATTGATAATATCGCTCTTGCTA 432 36 100.0 30 .................................... AGTATTTATTATCTCTATTACTTTTGTATA 366 36 100.0 30 .................................... CGTATTCAAAAGTATATCCGCTAGCCTCAA 300 36 100.0 30 .................................... TAGGTTTAGGGAGTAAATTAGCTCCTTTGG 234 36 100.0 30 .................................... GGTAAAACAAGCATCGGCGAAGCAGTAACA 168 36 100.0 30 .................................... TCCTAAATCTGAAAACAAAAACTACGAGTT 102 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 36 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 32 36 100.0 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACAGTATATCTCTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : C # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-1.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 729640-728311 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJQJ01000044.1 Listeria monocytogenes strain BCW_4295 PROKKA_contig000044, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 729639 29 100.0 37 ............................. CAATGCTTAAACCGAGAGCATCAAATTGTTCCCATGC 729573 29 100.0 36 ............................. ATTACAGTACAAGCAAGGGTTATTGAGTTAAATATT 729508 29 100.0 35 ............................. ATTAATGATAAGAGCGGAAAGAAAACTTTCAAGGG 729444 29 100.0 37 ............................. TCCCCCTTAAGATACAAACTCGATTTGACAGGTGCAG 729378 29 100.0 36 ............................. TCGTTTATGACCTTATGAAAGAGTTAACACCTCGAC ATC [729369] 729310 29 100.0 36 ............................. CTTCCTACTTTTTGACATAAAAAATAAGCCGAGTTG 729245 29 100.0 36 ............................. AAGTTCAAAACCTCCCACACCCGCTATGAATAAATT 729180 29 100.0 37 ............................. TTCGTAATTTTACGATTATACTTTTTAGTCAAATTAC 729114 29 100.0 35 ............................. GTAACAAGTAGTGTTATACCTGCAACAATACCAGT 729050 29 100.0 36 ............................. TGGAAATGGGAAGAAAGAAATGCACTGATTGTAGAG 728985 29 100.0 36 ............................. GTCCACATCGACAATAAAAAACACATTGTATCACTT 728920 29 100.0 36 ............................. CTGGTTACTCAACTGGCGACAGTAATACACCTCAAT 728855 29 100.0 34 ............................. TTTGGATAGGTTGTTTCTGATAAATAGGTTCACG 728792 29 100.0 34 ............................. AGAAAAAAAACATCTTTCCAATTTGTTGTTTTGC 728729 29 100.0 37 ............................. ACAAGTGCTAGAACAGAAGTTATAATTTGAACATTAC 728663 29 100.0 34 ............................. AGAAGCGTTAGCGGCATTGTTCGAAAGTAATTTA 728600 29 100.0 36 ............................. TATAAAATATTGCCCAATGTGCGGAAGGAGTTTGGA 728535 29 100.0 37 ............................. AAGAAATCCGGGAAGTTTTGTTCTACAGAGCGAACGG 728469 29 100.0 36 ............................. GTGTAATTCTTAATTCCGTATTGATTCGCTAGTTTT 728404 29 100.0 35 ............................. TTTTGAAATATGAGGACTTAGAAAATGAAAAAAAT 728340 29 93.1 0 .......................C....C | A [728315] ========== ====== ====== ====== ============================= ===================================== ================== 21 29 99.7 36 GTTTTAACTACTTATTATGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAAGATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCAAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAAGGTGAAATAACTCCAGCGCTTTTAGTTAAGTTAAGGATGGAGTTAGATAAGTATATTCGAGATGATCAAGATTCAGTAATTGTTTTTTCTAGTAGACAACAAAGATGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAGACTTCTAATTTCTTTTGATGTTCTCGGTCTGTCGACCTTTAGTAGTGCGAAAAATAGTGGGGTTCGACAGATTTAGGGAAATCATTGGGGGAGAAAGAGTTTGAAGTTTTTAAGCGAAAATCTGAAGGGATAAGTTATGATTTTTACGTAATTTTTAAGAGGTCGACAAAAATAGTGACCTGAGTTATGATGGGAGTAGGCGTAAAATAGAGCGG # Right flank : GTCTTCTTAAAATTTAAACCCCAAAAATAAAAAAGGCCAGGACTCAAATCCAAGCCTTTTCCTACACTCCTCTAAACCAACAAAACCACAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATCCCCTTAGAAGAAGTCGCTCCGCCAAACAGCGCCGCCACAACCACACAACTCAAAAAGAAAATCTGCACAGTCTCCGCCATTCCTGCTCCCGCGAAAAACAATCCCCACACAAGTCCTGCCGCAAGAAAGCCATTATAAAGCCCTTGATTCGCAAATAGTGTCTGTACTTTCTTATTCGCAAGTAGTTCTTTCTCCACACCAAACGTCTTGGCTGCAAGGTTGGTATTGGCGAAAAACATTTCTAAAATCATTATATAAATATGCTCGATCATTACGATGAAGGTTAAAATAAATGCTAAAATGGCCATAAAAAATCCCTCTTTTCTACTCCGAAGTATAGCATAGCTTGTAAATTTTTCGTAAAAATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:82.76%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [3-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 3-636 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJQJ01000010.1 Listeria monocytogenes strain BCW_4295 PROKKA_contig000010, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 3 36 100.0 30 .................................... TATTGGTGCCGCGATTAAAGTGTTTGACTT 69 36 100.0 30 .................................... AAAGCAATAAATCAGATCATAAAGGAGCCT 135 36 100.0 30 .................................... CGACGGAAAAATTAGACGACGCTAATGTGC 201 36 100.0 30 .................................... GGGCAACGATATTTGTAGATAACAGGGAGT 267 36 100.0 30 .................................... TACGATGTTAAGCGGTGGAGTAGATCAGTA 333 36 100.0 31 .................................... TATAGTCTGTTTTTTCGTAAGTGAGCAGCGC 400 36 100.0 30 .................................... TTGGGCAAAATGACCGTAATAAATCCATTC 466 36 100.0 30 .................................... TTAGCACTTATATAGAAGCCCCGCCCCTAC 532 36 100.0 30 .................................... AGTGATGGGGAAGAGATTGAACTTATGTTT 598 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [623,629,632] ========== ====== ====== ====== ==================================== =============================== ================== 10 36 98.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : TTG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCGCTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATGTAAGTAAAGAGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAATTTAAAAATCTTGTATGATTATATTCTAAATACAAGTAAAGATAATGAAACGATTGAACTATATACTGCTTGAAACAGCGAGGAAGATTTCCTGTTTTTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGACAGAGAACTATTAATAATTAGAAATGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [3.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //