Array 1 107892-106415 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEHQ01000009.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN070646 NODE_9_length_170878_cov_97.6747_ID_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 107891 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 107830 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 107769 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 107708 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 107646 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 107585 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 107524 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 107463 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 107402 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 107341 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 107280 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 107219 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 107158 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 107097 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107036 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 106975 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 106913 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 106810 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 106749 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 106688 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 106627 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 106566 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 106505 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 106444 29 96.6 0 A............................ | A [106417] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 126005-124024 **** Predicted by CRISPRDetect 2.4 *** >NZ_PEHQ01000009.1 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN070646 NODE_9_length_170878_cov_97.6747_ID_17, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 126004 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 125943 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 125882 29 100.0 32 ............................. GACTGTTTATACCGGATTCCATGCGTTTTCAG 125821 29 100.0 32 ............................. GAATTACTGGCTAACGACGAACTGACAGTTGA 125760 29 100.0 32 ............................. CCGGACCTAAACCTGAAAAAACCGACGCCCAA 125699 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 125638 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 125577 29 100.0 32 ............................. GGCTTTGGTGAAGATTTCTGATTTGGTCATTT 125516 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 125455 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 125394 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 125333 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 125272 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 125211 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 125150 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 125089 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 125028 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 124967 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 124906 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 124845 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 124784 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 124723 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 124662 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 124601 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 124539 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 124478 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 124417 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 124356 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 124295 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 124234 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 124173 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 124112 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 124051 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGAGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //