Array 1 174066-173912 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLY01000027.1 Streptomyces albidoflavus strain FXJ6.189 Scaffold10_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================ ================== 174065 24 100.0 44 ........................ TCGGTGACCGGCACACCCACCCACCAGCAGGCGCAGCCGAAGCC 173997 24 100.0 38 ........................ TCTTTGACCGGCACGGTCACCCGAGGCCCGGCCGAAAA 173935 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ============================================ ================== 3 24 100.0 42 CAGCCCGGCCGGCGCTTGAGGCCA # Left flank : GTGGGTACGGAACATGCGCGCGGCGGGTGGCGGCACCCTACGACTGGGCCGCCGCACCCGCGCCTTCCACGCCGAGGAGCTTCCCGACAACGCCCTCAAGGCCGAGATCCTCCGCACCTACCTCGCCCGCTGGGGCTGGGAGGTGAACGACTACTTCCAGGGCGTCACCGCCCGGTCGCCCGAAGCCGACCTCCTGTCCGCCTGCCCGGACCACCCGGTCTTCCGCATCACCACGACACCCCAGAAGAAGTAGCCGGGGCCTGCGACAAGCCCGTACGGCCAGCTCCCAGGCCGACCGACTCCCGGCCCGACGGCCAACTCCCAGGCCGTCCAGCCCCCTCCTGACCCGACAGCCGACTCCCGACCCGACAGCCGACTCCCGGCCCGTCCGGCCGACTCCCGGCCCGTCCGGCCAGCTCTCGGCCCGTCCGGCCAACGTCCAGGCTGTCCGGCCCAATTCCAGGCCGTCCGGTCAAAACTCAGGCCGGCCCGCCAACTCC # Right flank : AAAGGGAACTCAGGCGTCCCCGGGCTCATCCGGATCGGCCCGATCGAGAGCGGGCCGGGGCGGCGGCGCAGCCGCCAGAAGCTGATCGGCCGCAGCCGTGTCGGTGACCAGACTGGTCACCAGCCCGGACCGCAACACCGCGTCGATGGCCGGCGCCTTCCGCCCACCCCCGGCGATAGCCACCACCTCGGGAATCCGCCGCAGCCGATCCGCCTCGACGGTGATGCACCGCTCCCCCAGATCCCGCCCGACCCGCCGCCCCTCGGCGTCGAAGAGGTGCGCGGACATCTCCGCGGCCACCCCGAGCGAGGCGTAGTGCGCCCGCTCCTCCTCGCTGAGCATGTCGTGCACGGTCGAGATCCCCGGCTCCCAGGACCCGATGGAGACGGCCGCGACCGTCACCTTGTCGAAGTGCTCGAAGGCCCGGGCGATCCCGGTCTGGTTCCGCAGCGCAGCGGCGGTCGCCGGGTCGGGCAGCAGCATCGGCGCGTAGATGGGGT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCCGGCCGGCGCTTGAGGCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.20,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [28.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 235555-235707 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLY01000022.1 Streptomyces albidoflavus strain FXJ6.189 Scaffold1_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ========================================= ================== 235555 24 100.0 41 ........................ TCTGGAACGGACGAGTCCGATCCGGACCTCGGCCCACAACC 235620 24 100.0 40 ........................ TCTTGAACCGTCAGGTTCCCCCGGGCCCAAGCCCAAAGAT 235684 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ========================================= ================== 3 24 100.0 41 CAGCCCGGCCGGCGCTTGAGGCCA # Left flank : CCAGGGTCGCAGGGCATCCAGCGCCGCCGGAGCGGGCGGCGCACCCCCGGGCCCCCGCACCAGCCACTCGTTCCACAACGCACCCCCGGGCGCCACCACCGCCTCGAACCGCAACGCGGGCCAGAGCACCACCGGCCACCGCAACGCCTCACACTCCAGATCCCCCACGACCCGCCGCTCCACGGCCTCCGGCACCCCCAGCACCGACCGCAGCAACCCGGCCCCCCGCCGCCCCCTGGGTGACCGCACCATCGCCTGCCACCGCCGGTTCGCCTCCCGCATGGCGCCGGCATCCACCCCCAGCTCCCGCCGCGCCTCCTCCACCATCCCCGCCTGAAAATCAGCCATCCGCCGCAACAACACCAACTGAAACTCAAGCGACCCGAACGAACTGGTCCCACCTACAGCAGCGCACATCCCCCCATTGTCCGCAGCCCCCACCCCACCGCGAAAAACAGCGGGCACGACCGCCGAGAGGCAGCTGGCCGACCGCCGAAAAG # Right flank : ACCCCACCGCACCCCCTGCCGGGGAGGGAACCTCACTCCCCGGCCATCCTCCGCAACATCCCCCGGAGGACCTCCCGCTCCTCCCGGGAGAACCCGGCAAGCGGCTCCCGAGCAAAATCGAGGGAGTCCCGCAGAACCCGCGCGATCTCACGCCCCTCCGCGGTCAGAGCGGCCACCTTGATCCGCCGATCCCCGGGATCGGCCTGCCGCTCGACCAGCCCCCGCAGGGCGAGCCGGTCCACGATCCCGGTGACGTTCGACGGCTCGCACTTGAGCCGCCGGGCGATCTGCCGCATGGGCATCGCCTCAAGGGACAGCAGACCCAGTACGCGCGCCTGCGCGCCGGTGAGTGCCTGCTCGGCGGCGGCCCGGTCGTACTCCTCGTGGTACCGCGCCACGACAGCGCCGATCAGCTCGACGACTTCGAGGGTCAAGGGGTCCGTGCGGGTGGCCATGGGTCCCAGGATAGCCGGTTGCTTGACAACATGAAATATTCAGAC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCCGGCCGGCGCTTGAGGCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 187558-187345 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLY01000021.1 Streptomyces albidoflavus strain FXJ6.189 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================== ================== 187557 30 93.3 31 .........................T...T CGTCCCAGGTGATCGCCATGGGTGCGAACGG 187496 30 93.3 31 ...........A.............T.... GCGTCAACATCTGCGACCTCGACCCCAACTG 187435 30 100.0 31 .............................. AGGCCGCTCCGGTCGTCACGAACATCATCGA 187374 30 83.3 0 ..............G......CAA.....A | ========== ====== ====== ====== ============================== =============================== ================== 4 30 92.5 31 GTGGTCCCCGCGCACGCGGGGGTGGCCCCG # Left flank : CAAGCCCACACCGCGCCGGCCTCTACGCCACCGGCAAAGTCCGGTACCAGGCGAACTGCTCGTGAGTGGGCATCCAGTGCTGGCCGCACCGGGAGCAGTACCAGCGCCAGTTGTCGGGGTCGTTGCGGAGGTACGTCGTGTCCTTCCAGAGCCGACCGTGGATGTCCGTGTGGCAGGCCCGATCAGGACAGGGCGGGGGAACGGGCGTGGTGCGCGGGCGAGTTGTGGTCAGCATGGGCGCCTCCGTGACTCGATGGGGTCAGGAGGGTGAAACGAGGGGGCTCGGGGCTGGGTGTGGGGCCGGGGCGAGGTGCGTTCGTTCGCGTGATGAATGGGGGATGAGATGCGCGGGGGGCCGGGGTCTGCTCCGCCGCCTCGGTCCGCTGCGTAGGATCTAGCGAGGGGCTCAAGGCGAGGTGGGCATTTTGGGCCGAATGTCGCTATCGGTGAAGCTTGCAGAAACTGGGGCAGGGGCGCCGTAAACCTGCTGGTCAGGGAGA # Right flank : CCCCGCCTCACCCCGACCCGGCGCCCAGCGCCGCCACCCGCCTTGCTCCCCCCACCCCCACCTCCTACCATGAATGCGCTTTCACAACGCGTGAGGCGGGTCGGTGGGCTCGGGTTCTGGATGGTCGGAGCGGGCGGGACGGGATGAGGGTAGGGGCGCGTGGGTGACGGGGTGGCGGGGACGCCGACGGTGTATGACGTGGCCGGGCGGGCGGGGGTGTCGATCGCGACCGTGTCGCGGGTGTACCGGAGTCCGGAGTCGGTGCGGGAGGCCACGCGGGAGAAGGTGCTCGTGGCCGCGCGGGAGCTGGGGTACGTGCCCAGTGGGAGTGCGCGTGGGCTGGCGAGCCGGTCGACGGGGGTGCTGGGGCTCTGCTTCCCCGACTACTCCGACCCGGACGCCGAGAGCGAGGCGGCCATGGTGGACGCCGACGACGACCACGCCTTCATGCTCTACTCCGACCAGATCATCCGGGGTATGGAGCGGGCCGCGCGACGGCA # Questionable array : NO Score: 3.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGCCCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 571684-571834 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLY01000021.1 Streptomyces albidoflavus strain FXJ6.189 Scaffold1_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 571684 29 100.0 32 ............................. AGTGCGGTGGCGTCTTCGACGCGGCCGATCAG 571745 29 100.0 32 ............................. GCCTTCGAAGCGGCGATCGACGCTGCCGCGAA 571806 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 100.0 32 GTGCTCCCCGCGTGTGCGGGGGTGGTCCC # Left flank : CCGGCACCCACCCCCGCGTCGTCCCCGCCCACCACAGAACCCCTCCCCGTAGCCCGGTCTGCCGCTGCGGATCACCTTAGGGGACGGGGGGTTTGGCGTCTTGGGGGTGAGGGGGTGGGGGTGGCGTGGGCGGCTGGTACGGGGGTGGGGCTTCAGGGGGTGTAAGCGGGGGGTGTTCGGGTGCGTTCGGGTGGGGCGTCGAGTGGTTCGGGGGAGGAGGGGGCGTGGCGGGGCTGGAGTTGACGCGGGGGGTTGTCCTGTTCCGCTCCGTAGGAGCCACTGGGCGAGCGAGGTCGGTAGTTGGGGCTTCGTTTCGCTTGGGTGCGACGTTGCTGGAGGGTGCGCTTGAGAAGGCGGAGTCAGGTGAGGGGAAGTGGGGGAGGATGGGCGGGGCTGATGGATCGAGAGGGGGCGTTATGCGTCTTTCACGCGAAAGGCCGGAATCGGCGAAGCTTGCAGGAACGGGCGGCGGCGCTGGGTAAAGGCGCAGGTCATGGAGA # Right flank : CGACTGCCGCCAACTCATCACCACCGACCCCGTGTGCTCCCCGCGCCCGCAGGGCAACTCACCCGGCCTCCCTCAGCTCTGCCCACGCCCCCTCACGGCTCGCAAACCCCACCCTCCACAGCAGCCCCCTCCTCGCCCGCGAAAAACCCCACAACCCGCCCCGCGCACCCCCCACCAGCCATCCCTCCATGTTCCCCGTCCCCCACCACCAACAACGACCCCCCAGTTCGCGCCCGCATCGCCCGGGCCCAGGGCAATGGCGTGATCACCTCGTCCCTGTGGGCGACCAGCAGCAAAGGCCCGTCCGCCCGGCCCGGTTCCACAGGCGGCCGCTCCGGAGCCGGCAGGCCCGCGCACGTGCTGGTTCCCGGGACCTCGCCGCTGCCCGGGAACATCGGGCGGGTCGCGCCCAGTACCGGGTAGGCGGCACGGCGTTCGCCGTAGGCCGACCACTGTTCCGTGAACGAGGCGGCGTGGGTCACCTGGGAGCAGAGCAGTGC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19761-18691 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLY01000004.1 Streptomyces albidoflavus strain FXJ6.189 Scaffold13_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================= ================== 19760 33 90.9 28 .............................G.CG GGCAGAAGCGGGCCCACGCCGCGTGCGT 19699 33 97.0 28 ...............................A. CTCGTGCTGCGCTACCGGATCATCACCG 19638 33 93.9 28 ...............................CG AACGCCACTACCCGACCATGCCCACCAG 19577 33 97.0 27 .............................T... CCGGATCGCCGCCCGGCCCCGCACCCC G [19549] 19516 33 90.9 28 .............................T.CG CGTCCAAGCACGCCCGCACCCTCGGCAC 19455 33 93.9 28 .............................G.A. CATGCGCGCCGAACCCGGTGACTGGATC 19394 33 90.9 28 .............................GT.A GCTTGCGTACCGGCCCCCGCTTCTCGAT 19333 33 90.9 28 ..............................TCG TCCAGGCCGCCGGGAAGACGGACATCAA 19272 33 87.9 28 .............................ATCA AGACCAGCGAGGGCCAGTACATCTGGCA 19211 33 90.9 28 ..............................TTG CGGTACTGCACGCCTTGGCCGCCGAGGT 19150 33 90.9 28 .............................GA.G GGGCGCCCGCGGCTTCGTAGAGGTACTC 19089 33 93.9 28 .............................G..G TGCTCGGCGGGCGCTTGGAGGCGCGGTC 19028 33 100.0 28 ................................. CGGGACCGTCCGCAAGCTCCCCACCGAC 18967 33 90.9 28 .............................G.TG GGAACTCCAACTCTCCGCCGGCAGCATC 18906 33 100.0 28 ................................. CTTCGGCGGTCGCGCGAGCGCGAGCCTG 18845 33 90.9 28 .............................GG.G CCGGTGACCCCGGGCACCCGCCGCTCCC 18784 33 90.9 29 ..............................ACT CGGTCGCCATGCAGGGCATCGGCGACAAG 18722 32 78.8 0 ..T-....T..................ACAG.. | ========== ====== ====== ====== ================================= ============================= ================== 18 33 92.3 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGC # Left flank : CCGGGACGTCCAGAGCCTCCTGACGCCACGCTCTACGGGCACCATCGGCGGAGCGGGGGACGAAGACGAACGACAGGAGAAGCGCGACGTCCAGCTGGTCCACCTCTGGGACCCCAAGGCCGGAGCCCTTCCTGCCGGCGTCAACTACGCGGCCCGAGGTGAATGATGCCGTCCATGCTCGTGATAGCCACCACGGCCGTGCCTGACCACCTCCGCGGAGCACTCAGCCGCTGGACCAGCGAGGTCGTCCCCGGCATCTTCGTCGGGAGCGTCTCCGCCCGGGTCCGCGACCAGCTCTGGCAAGCCGTCACTGACACTGTCGGCAACGGCGCCGCCGTCCTCGTCCACCCCGCCCCCACCGAACAGGGCTACGCCATCCGAACCGCTGGCACCCGTCGCCGCGTCCCCGCCGACTTCGACGGGCTCACCCTGATCCGAATGACCGCTTCACCAAAGGTAAAGGGAATGCAAAGCCCTTCTTAAGGTGCAGGTCAGCAAGT # Right flank : TCTGCACCCCCAACAGGTTGGTCTTCGCAGCTGGTGCAGCAGGCCAGGCGCTTAGAAGAAGCCCAATCCATTGTCGGCCGATGGGTCCTGACCTGCGCATTTTCAAACTACTGACGGGCCGTCATGAGTTTTGTGGGACGTATGTGGGATCTGCCGATTTCTGGGAACCGTGGGAAGCGCGTGCTCCCTGGTGGTTCGTAGGTAGCCTCTCACGCCACCTTCACACGACCGAAGCCTCTGGTGGAAATAGCTGACCCCTTCTCGGTGTTTGTGATCTACGAGCCGAGGAGGGGAGGTGTCGGGTCTGAAACTGTTTCACACGATGAATGGCGGCGTGACTGAAGTCACGCCGCGTCTTGCTGCCGTCGAGGCGGATGTGCAGAGCCTGATCGAGGCGCACATGGAGACGATGCTGGGGGTGCGGTTGCTGGAGAGCGAGTACGTGATCGACTGCGTTGATGGCGGGCGGATCGACTCGCTCGGGATTGACGAGAACGGTG # Questionable array : NO Score: 5.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:0, 6:0.25, 7:0.00, 8:1, 9:0.18, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGCCGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.20,-12.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 29658-31094 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLY01000004.1 Streptomyces albidoflavus strain FXJ6.189 Scaffold13_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ============================= ================== 29658 33 97.0 28 .............................C... CGAGGCGGATGCACGTCCTGGCGGACGA 29719 33 87.9 28 .............................CTCC TGGAGGCGAAGGGCTGCTTCGTCCGCGC 29780 33 90.9 28 .............................CT.A CCGAGGAGTCCGGGGAGGTGGCGCAGGC 29841 33 93.9 28 ..............................A.A AGCCCGTCCCCTTCCTCGGCCAGCTCCT 29902 33 90.9 28 .............................GA.C GCCTGGCCGAGATGCAGGAGGAGCGGGA 29963 33 90.9 28 .............................G.CC GCACGGAGATCCGTGCGGGCCTAGACGG 30024 33 93.9 28 ..............................T.T TCCGGGCTGCGGTCGCCCGGCTGCGGAA 30085 33 90.9 28 .............................TT.A GTCCTCGGATCAGGGTGGAGGTTCCGCC 30146 33 93.9 28 .............................CG.. CAGGTCGTCAGTCGCCAGGGCGCCGGCG 30207 33 100.0 28 ................................. ACGGCGACCCAAGCGGCATGAAGCTCGA 30268 33 93.9 28 .............................C.C. CCACGGAATCGTCCGAGTGCCGGTCCAG 30329 33 93.9 28 .............................CT.. CGATGGCCGGTACGGGGATCGGGCTGCT 30390 33 93.9 27 ...............................CT CGGGAAGGTTGTGCTCTTCTTGGAGCC T [30419] 30451 33 90.9 28 .............................GG.T AGTCCAACTCCTCCTCGTCGTCGTCTTC 30512 33 100.0 28 ................................. TGACGAGGGTGTCGAAGATGGGCGTCAC 30573 33 87.9 28 .............................TTAT GCCCGGCGTTCGGGTCGGGGATCAGCTT 30634 33 97.0 25 .............................C... CCCCGGCCGCCCCGGCGTTGGCCAG TAC [30663] 30695 33 93.9 28 ..............................T.T GCTCGGGGATGGTGATGTCAGCCATGGC 30756 33 90.9 28 .............................T.CA GGCAGCCGTCCGGACCGGCCGCACGCGC 30817 33 93.9 28 .......................A.....C... TCCATCAGGCCCGGCCCGACCCAGGGGG 30878 33 90.9 29 ..............................TCC ACGTGGTGGAGCAGGCCGACCTGGACGGC 30940 33 93.9 28 .............................CA.. ACGGCCGCCACACCCCCAACCTCTGGCC 31001 33 90.9 28 .............................GA.A GACGTGACTGCACAACCTGATCACGAGG 31062 33 90.9 0 .............................CT.C | ========== ====== ====== ====== ================================= ============================= ================== 24 33 93.0 28 GTCCTCCCCGCCGACGCGGGGGTGTTCCGACGG # Left flank : AGGCCAGCACACAGGCCGACGAGCGCCCGAGCGCGATCCGGTTCCCCTGCCAACCCCATCCCGTCGGCTATGCGCGCCCTCTGATTCTCCGCCAGGTAAACGTCCCACAAGTGGAGTGCCATTGCTGCCGCGTCGAGAAGATGCCTCACCAACGGGTAGGGAGGCAACGCCGGATCCAGCCCCCGGGACTTTCCCCACACCGACTCATCCACCACGTTCGGCCTATGCACGCCAGCCCTCTCCGCTCCACCACTCGAACTTGATCTGGCAACAGAAGCGAAACCGCCACCCATCGCATACAAGCACCCGGCACTGACATTGATGTCGCTACTTGCGTACCGACGGCCGTTCCTCGATCAGTAACGGGGCGCGGTCCACGCCTTGGCGACCTTGCAAGCTGCAGCTGGCTAGAGTGGCGGCATGCGTCTGACTGGTCGCCTCACCCCCTCAAGAATGGCAAAGAAAATGCAAAGCCCTTCTTAAGGCGCAGGTCAGGAAGT # Right flank : CGCGGGAGGCAGTCATCCCAGTCCTTGCCGTTGTTCCCGCCGCCACGGCGCCAAGCCTGTCCCGGAGCGACCCGCCAGCTCGCCGCCGCCACAGGCCGACGGTCAGGGGTGCACTCCGTACCGACCAAGATCCGGGCCATACTCGGACCAGCCGCCTACAGCTTGGCCGCATAGTGGCCGTTCCCGCTGGTCAGGGACCACGGGAGGCGTGTACCACCAGCAGACGAAGAACCTGCTGGAACTCTACGCAGGTGTTCGCCTGCCCGTACTGCCGTACAGAGCCGAAAGGCACCCGTCAGCGTTGGGAGTCCCCTGGGACATTTCTGGGACTTCCGGCCCCATCAAGCGACACGAGCGTGAAACAGCCGAAAGGCCAATCGCGCAGCTCAGTGACCACACGCCACTCATCGCGGCAGGTCACCGCGTTCGCTGGTCTCTTCCGGGACATCTGATCTGCACGATCCGGCGGGCCCCGCATTGAGCGTCACCAGCCCTCGGCG # Questionable array : NO Score: 5.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:-0.01, 8:1, 9:0.13, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCGCCGACGCGGGGGTGTTCCGACGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.60,-13.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 12230-12448 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLY01000014.1 Streptomyces albidoflavus strain FXJ6.189 Scaffold3_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ======================================== ================== 12230 27 100.0 34 ........................... CCGCGGAGCACCCCCTTGAGGTGCGGTTCGTCTC 12291 27 100.0 34 ........................... CCAGTCGACCCCCGGGCGGGGTCCGCGCGGGGGT 12352 27 100.0 40 ........................... CCTTCTCCCGGTCGCTGGGCTTGGGCTTCTTCTTCTGCTG 12419 27 92.6 0 .................A...C..... | CCG [12426] ========== ====== ====== ====== =========================== ======================================== ================== 4 27 98.2 36 CTGCTCCCCGCGCGTGCGGGGTTGGTC # Left flank : TGAGCCTGCTCCGAGCGATGGACATGCCGCTCTCGCCACGCGAGGTGCGGGTGCTGAGCAGGGCCGCACAGGGGGACTCGGTGGCGGAGATCGCCCGGGGGTTGTGCCTGTCGCACGGGACGGTGCGGAACTACATCGCTTCGGCTACGCGGAAGGTGGGGGCGAGGAACCGGGTGGATGCGATTCGGATCAGTCGGGCTGCGGGGTGGGTTTGAGGGGGTGGGGTGGGGTTGAGGGGGCTGGTGGGGGCTTGGGTGGTACGAGGGTTGGGTTGGGACTTGGCGGGTGGGGTGGGGGGTTGGGTCGGGTAAGGCTGAGGAGTGGGGTCGGGTGTGAGTGACTGGAAGGGAGGGGTTCGCGGGAGATCTGTCGGGTTCAATGGGGGGCGGGTGCTGGGTGGACACCATGGAGGGGATACGAGGCATTCGCCTGCATTGCCGGAATCTTTGAAGCTTGCAGGAGAGAGTGACTCGGCTGGGTGAAACCCCAGGTCAGCGAGA # Right flank : TCCCTCCCGGCCCCCGAGCAAGCTCCCGGCAGCCGCTGCTCCCCGCCCACGCCTAGGTCGACGCGGTGCTCCGGCTCCCCGCCGCCGAAGGCTCCCCCAGCCCCGCCGCCAGTTCCCCGTACAAGGCCGACTCCCGAAGTAGCGAGGCGTGGGTCCCCAGGTAAGGGGTCGCCCCGTCCAAGAGCAGGACGCGTTGCCCAGGTTCAGGCGCCGGAAAGTGGTGGCTCACCGTGATGACCGTGGCCGGGTGGGAAGCGAAGGCCAGCTCGGTCGCGGCCCGTGCCCCTGCGTCCAGGTGGGCCGTGGGCTCGTCCAACAGCAGCAAAGGCGTAGGTGTCAGCCAAGCCCGTGCCAAAGCGATGCGGCGGCGTTCGGACGGGCTGAGGTGATCCGGGCGGAGGGGGCGGGCGGGGTCAGCGGCGAGGGGGGCCAGGGTGAAGGTGTCGATGGCTTCCGTGATGCGAGGGGCCGGGGCGTTCGGGGCGAGGTAGGTGAGGTTG # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGTTGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGTTGGTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [45.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 447940-448272 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLY01000014.1 Streptomyces albidoflavus strain FXJ6.189 Scaffold3_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 447940 28 92.9 33 A...C....................... GGCGCTGATGGGCGCTCCCGAGCCCGTCCTTGT 448001 28 96.4 33 ...........A................ GGGGGAGGGCAACCCCCCGAGCGGCACCCCGGC 448062 28 100.0 33 ............................ GCAGGTCAGGGGCTGGCTGGACGATCCGGACAC 448123 28 100.0 33 ............................ GCCTCACGGCCACCGCTCGGCTTCACGATGCGC 448184 28 100.0 33 ............................ GGCGACGGTGAAGGCGAAGCGCCCCACCCAGCG 448245 28 89.3 0 ....................C...GC.. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 96.4 33 GTGGTCCCCGCGAGGGCGGGGGTGTTCC # Left flank : ACCGACGCCGACATCACCCGAGCCGTCGAAGCCGGCGCCACCGGCTACCTCCTGAAAGCCGAACGCCCCGAGGAACTCTTCACCGCCATCAGGGCTGCGGCCTCGGGGCGTACGGCGTTGTCCCCGCCTGTGGCGCAGAGGGTGATGACTCACTTGCGGAACCCGCAGCCGGAGCTGACCCCGAGGGAGCGGGACATTCTGCGGCACTTGACGCAAGGGCTGGGGAACCGGGAGATCGCCAGGGCGTTGTTCATCAGCGAGGCGACGGTGAAGACCCATCTGGGCCGGATTTACCAGAAGTTGGGGGTGGAGACACGGGCGGGGGCGGTGGCTGTGGGAAAGGAGCGGCGGTTGTTGGGGTGAGGGGGGCGGCAGGGGGTGGGTTCGTGGATTGGGGGGTGGGGTGGGTGGGGGGGGTGCGTAGGTTGGGGGGTGAGTGGGAGGGTGCGGTGATGGGCAAAGGGATGGCAAAGGCCGTCCGAAGGTGCAGGTGGGGGAGG # Right flank : CCCGCCAAACCTGACAGGTGTTCCCCCACCCAACTCCCCGGCCGAACCGGACGACACCCATGTCACTGAATCGCAAGCGCCCCGGAGCCCGCAAAGGCAACACACCCACCCCGCCCCGCCCTGCTCGCGCGTCAGCCTCACCAAGGGCACCCCCGCGTCGCCGACCAAAACACCCCCGCCAGAACACCCCTAGAACCGGACAAAACGCCCCCACCAACAGCAGCCACGCCAACCACCCTCAACATCACGAACACACGATGGTCACGAAATCGCCACAGGCGGAGCATCCGGCACTCCCGTCATACCTCGCAGCCCCACACTGAGCGGACGCATCCGCATTCAGGGGGAATCATGAGACGCCAACTCGCCATCGCCGCAGCATCCTTCACCGCCGTACTCGGCCTCGCCGCCTGCGACACGGAGGTCACCTCCTCCCCCGACAAGCCCGCGGCCGCCGACGACGCGAAGCCCGGCAAGGAAGCCGACAAGGCCGAACAGGC # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGAGGGCGGGGGTGTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCGAGGGCGGGGGTGTTCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.90,-11.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 143275-143423 **** Predicted by CRISPRDetect 2.4 *** >NZ_PKLY01000009.1 Streptomyces albidoflavus strain FXJ6.189 Scaffold5_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================== ================== 143275 24 100.0 37 ........................ TCTTTGACCGGCAGGTCACATCGGACGGCGCACAACC 143336 24 100.0 40 ........................ TCCTTGACCGCGAGGTCGGCACAGACCAGCACCCCTCGAT 143400 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================== ================== 3 24 100.0 39 CAGCCCGGCCGGCGCTTGAGGCCA # Left flank : CCTTCTTCCTCGGGCAGGCCCTGCTCGGGAACCTCTCCGCCTCCATCGGCGACCCCGGCGTGCTGCGGGCCGTCATCGGCGCCGCCCTCTACATGACCCTCATGGCCGTCTTCTCCATGGGCGTCGCCGCGATGCTCCGCTCCCCCATGCTCTCCCTCGGCATCCTCGTCCCCTTCTTCTTCCTCGTCTCCTCCATCCTCGGCGCCGTCTCCGCCACCGAGAAGATCGGCCGCTTCCTCCCCGACCAGGCCGGCTCGAAGATCATGCAGGTGGTGGCGCCGCTGAACGACGACACCCCCTACGGCCCCTGGGGCGGCCTCGGCATCATGGCCCTCTGGGTGATCGCCGCCCTGGCCATCGGGTACGCCCTACTCCGCCACCGCGACGCCTAGCCAGACGGAACCAGGCCATCGACCGGGCGGCCTCAAACGCCGGCCAGGCTTGAGTGGCCTCAAGCGCCGGCCAGGCTCAGTGGCCTCAATCGCCGGCCGGGCTACCGA # Right flank : AACCCCCCAGCCCCCCCCCGGGAGGGAACTTCCGCTTGGCCGGAACCGAACGCCGGTGACTATCCTCCTTACGTTGACGGGGACAACCCCGGCAAGGAACTCTGTCGACGGGTGCGGGGAGCACATGATCGAGGCCACCGGCCTGACGAAGCGCTACGGCGCGAAGACCGCCGTGCACGACCTCTCCTTCCAGGTGAGGCCCGGCACGGTGACGGGCTTCCTGGGCCCGAACGGCTCGGGCAAGTCCACGACGATGCGCATGATCGTCGGCCTGGACGAGCCCACCAGCGGCCATGTCACGATCGGCGGCCTCCCCTACCGCCGCGTCCCGAACGCCCCGCGCCAGGTCGGCGCCCTGCTCGACGCCAAGGCGGTGCACGGCGGCCGCTCGGCCCGCAACCACCTGCTCTGCCTCGCGCAGCTCTCCGGCATCCCGGCCCGCCGGGTGGACGAGGTGCTGGGCGTGGTGGGGCTCCAGGACGTGGCGCGCCACCGCTCGA # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCCGGCCGGCGCTTGAGGCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.10,-1.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA //