Array 1 38919-37211 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJFCI010000025.1 Pseudomonas carbonaria strain CIP 111764, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 38918 28 100.0 32 ............................ TCCACCACCGCCCCCGCCGGCCTCGGCGGCAT 38858 28 100.0 32 ............................ GTTTCCTGCTGGCCCTCCAGGGCGATCAGGGT 38798 28 100.0 32 ............................ ATCGACGTGGCCGACGCGGACATCATCCGTGC 38738 28 100.0 32 ............................ GTGACGCTGTAGCCGGTGCAGAACGGGGCCTG 38678 28 100.0 32 ............................ TTCTCCCGGTACTCCATGACGTCCTTGGTCGT 38618 28 100.0 32 ............................ ATGAGGGGTTGCCAGGGGCGGGTAAAAGCTAT 38558 28 100.0 32 ............................ AGCGAGGCTCCCACGGCCAAGCAAGGTCAACC 38498 28 100.0 32 ............................ GTCAAGGACCTGGAACAGCTTGCCCCACTGTA 38438 28 100.0 32 ............................ TGCCGACCGACCGCACCTGGTTCGTCTTCGAG 38378 28 100.0 32 ............................ AGCAGCTCGCGCGGTACGGTGATAGTGGTCAT 38318 28 100.0 32 ............................ ATTACTGCCCAGCTCGGCCAGGCAGCCGAGGA 38258 28 100.0 32 ............................ TTTAGGCCTGTCCGTCTTCCACAAGCCTGTAC 38198 28 100.0 32 ............................ TGTCGGGCAGCCAGGCGCTGGGCAACCATCCC 38138 28 100.0 32 ............................ ACCGCGCGATATCATCCGCGAACTCTGCTGCG 38078 28 100.0 32 ............................ AGAGGCGGTCAGGTAGTGCAGAGAATCCGTAC 38018 28 100.0 32 ............................ AGATCCACAGGTCGGTGGAAAGAGGCTGGAAT 37958 28 100.0 32 ............................ CTCGACAAATTCAGCGAGTCCGGCGGCCTGCT 37898 28 100.0 32 ............................ TTTCCATGTGAATCGGATGCGGAGCGACCTTC 37838 28 100.0 32 ............................ AAGAAAATGGAGGCGCAACTCCGCCTCGCCAC 37778 28 100.0 32 ............................ TGAGGAAAATCAATGCCTTACACCCTCTACGG 37718 28 100.0 32 ............................ ACGTTCACCGATGCCAACGGGGCTCAGGAGGT 37658 28 100.0 32 ............................ TTGGTGAAAGGGTCCACGACCTTTTTCGCCAC 37598 28 100.0 32 ............................ TCGTCGGGGTCAGGCTGACGAATGGTGATACC 37538 28 100.0 32 ............................ AGGGCGTGCGCTGCAAGCGTGTCGGCCCGGGT 37478 28 100.0 32 ............................ TGCTCCACGGAAACATCATCGACCTCGCTCTC 37418 28 100.0 32 ............................ GGAAGGCCTTCAGGGTATTGCTGCATTACGGC 37358 28 100.0 32 ............................ CGTCACAGCCATCCGGACGTCATAATCGTTAC 37298 28 100.0 32 ............................ GAGATCCTGCGCGAGCAGCACACGCCGGGCGA 37238 28 85.7 0 ..T..........C........C....T | ========== ====== ====== ====== ============================ ================================ ================== 29 28 99.5 32 CTGCACTGCCGTATAGGCAGCTAAGAAA # Left flank : AGCCCTGGACCGTCTGCTGGCGCTGAACTGGCTGAGTGGCATGCGCGACCATGTGCAGCTCGGCGATCTGGCGCCGATACCCGACCAGGTGGCCTGGCGATGCGTCAGTCGGGTGCAGGTGGACAGCAACCCGGACCGCGCTCGTCGACGGCTGATAAAGCGCCATGGCATCAGTGAGGAAGAGGCCCGCAGACGCATCCCCGACAGCGCTGCCAAACGCTGCGATCTTCCGTTCGTCACCCTGCGCAGCAACGGTAATGGCCACAACTTCCGACTGTTCATCCGCCATGGCCCATTGCTTGACGCTCCCAGTCCTGGCCAGTTTGGTAACTACGGTCTGAGCGCCACCACCACGATTCCCTGGTTCTGACCCTCTTTTCAGAACCCATCCGGGGCCCTTGTAAAATCAATGACTTGCAAGAGCCCCCAGAAAAAGGGTGAAAACCGGGGAAATCCTCATTTCTTTTTGAAAGTCAGTGAGTTGGTTCGTAGAGTGTCTA # Right flank : TTACCTGCCGCCCAGGTAGAACCAACCGCACTACTCCGCCAGGTCATACCCCTCGGCCAGGTGCAGTTCCTTGAGCTTCACGTAGTTCTCCGCGCTGTAGGCGAAGAAGGCGCGTTCCTTGTCGGTCAGCGGCCGCGCCTGCTTCACCGGGCTGCCGACGTAGAGGAAGCCGCTTTCCAGGCGCTTGCCGGGCGGGACCAGGCTGCCGGCGCCGATCACCACTTCGTCCTCGACCACCGCGCCGTCCATGACGATGCTGCCCATGCCGACCAGGATGCGGCTGCCCAGGGTGCAGCCGTGCAGGGTCACCTTGTGGCCGATGGTGACTTCGTCGCCGATGGTCAGCGGGTAGCCGTCCGGGTTGAAGGGGCCGGCGTGGGTGATGTGCAGCACGCTGCCGTCCTGCACGCTGGTGCGTTTTCCGATCCTGATCCGGTGCATATCGCCGCGGATCACCGCCAGGGGCCACACCGAGCTGTCTTCGCCCAGTTCGACGTCGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 48872-49679 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAJFCI010000025.1 Pseudomonas carbonaria strain CIP 111764, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 48872 28 100.0 32 ............................ ACATCGATACAGCAGGGTGGATGCCTGAGAAG 48932 28 100.0 32 ............................ TTCGAGCGGACGAGCGTCGCCAGATCAAACCC 48992 28 100.0 32 ............................ ACACCGAATCCCCAGGCGGTCAGCCAGAGGAT 49052 28 100.0 32 ............................ TCGACGCTGTGGCCGAGCTGATTGGCAATGAA 49112 28 100.0 32 ............................ TCAGCAATGCCGAGCGTCAGCGCCGCTACCGC 49172 28 100.0 32 ............................ AGGCCCGGCGGCATGAAGCCCTCGCCGCTGAT 49232 28 100.0 32 ............................ AACGATCAACTGGAGATGTGATGGCGACCAAC 49292 28 100.0 32 ............................ TCCCTGCGTCGACGGCCCAACTCACAGCGAGC 49352 28 100.0 32 ............................ ACTAACTGGTAGCCCAACGCCCAGCAGGCATC 49412 28 100.0 32 ............................ CGGCGATAGTGTCGGTGACGACTCCGGTCGCG 49472 28 100.0 32 ............................ TTCTCGGTGGTCTTCTTAGACGTGCAGGTCTG 49532 28 100.0 32 ............................ GACCCGGTGCCGGTGCCCGGCTACAGCACCGT 49592 28 92.9 32 ..........A.G............... ATCATCGAAGTTCATGCTGTAGGCGTTGTTGG 49652 28 75.0 0 ...........C.C........CCTCT. | ========== ====== ====== ====== ============================ ================================ ================== 14 28 97.7 32 CTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ATCCACCTCGTTGGCCGAGAACAGCGGCGTTCCGCCTCCGCCACAGAAACCCACCAACACACCTGCCTTGGCCAACTCGCGCATGGCCGCCTGGGTAACCGAGGTACCGGTGCCGAGCAGGATCGTCGTGGTGTTGGCGATGGGGATGTTCCAGTACAGCGACTGCTTGCCGGCATCGGTGACGTACTCCACCCGCCCGCCATTGACCAACACCCGGCAGTGTTGCAGGTAGTAGATGTTGGCGCGCTTGGAATGGAGGATCGACTTGAGGTCGGAAGGGCTGAGGTCATCCATGGAAGCTCTCCGCGAAATCATGGAGGCATTCTGGCCTTCACAGCGGAAATATGGAAACGCACCATGCAGCGCTGATAACCCTTTTTTCTGAAGTCTTTCAGAGTCCTTTAAAATCAAATAGTTACAGATTCTCCCAGAAAAAGGGTTTTTCCAAGGAGAAAGAAGATGGGCCTTTGAAAGCAAAGAGTTGGCGGGTATTGTCTCTA # Right flank : ACTTCCTGACGCCCAAGCCATTGCTCCGCCCGCCAACCGCCGCCCAGCGCCCGATACAGGCCGACGCTGGCTTGCAGGCGTTCGAGCTGGAGTTGTGCCGCTTCGTCCTGGGCAGCGTAGAGGGTGCGTTGGGCGTCGAGCAGGGTGAGCAGGGTTTCCGCGCCGGCGCGGTAGCGGGATTCGGCGAGGCGGAAGGCCAGTTCGGCCTGGGCCAGCGCTTCGCGCTGGGCGGCCAGTTTGGCGGCGCTGCCGGCCAGGGCGTTGAGTGCCGTTTCCACGTCGGCGAAGGCGGTGACGATGGCGCCACGGTAGTCGGCGAGCAATTCCTCGCGGCGGGCGATGGCGATGTCGCGGTCGGCGGCCAGGCGGCCGCCGTCGAAGATCGGTGCGGCGAGCGCCGCCGCCAGCGAGTAGACCGGATCGGCGAACACGCGCGACAGGCTGCCGCTGCCGCCACCGGCCCTGGCCGTCAGGTCGAGGCGCGGCAACAGGGCGGCGCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched CTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //