Array 1 38091-37818 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEXF010000005.1 Streptomyces sp. G44 NODE_5_length_138096_cov_10.779479, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 38090 29 100.0 32 ............................. GGGGCCAGCCTTCCGAGGAAGGGCAGCGGCTT 38029 29 100.0 32 ............................. AGGCCCGGCTCATCTACCAGTCCCGTCTGCAG 37968 29 79.3 32 C..........G.C.....A..C.....T CGGCCCACGACCAACACGCGCTTCGGTGCGGG 37907 29 86.2 31 C........C.G..T.............. GTGGACGGCGGCGATCTCCGTTGCCGCTGAA 37846 29 89.7 0 ...........G.CT.............. | ========== ====== ====== ====== ============================= ================================ ================== 5 29 91.0 32 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : ATGGTCCCGCCCCGCTGGCGGTGAACGCCACGGCGGTGGTGTGCTCCCCGTGCTCGCGGGGATGGTCCCCAGAATGCGGAGCAGGCCTCCGCGCGCTGGGGGTGCTCCCCGCGCCTGTGGGGATGGTCCCTCGACGTTGGTCGCGAAGCTCGGGAGGGCCCACTGCTCCCCGTGCCCGCAGGGTTGGCCCCGTCGTGACGCAGCTCCGCACGCGGTCGCCTCGCCGCTCCCCGCGCCCGCGGGGATGGTCTTACAGGGGCCAGTCATTGGGTTCTCCGTGTCCGGCCCGGGGGTGTGGCCCCTACGCTCGCTTGGTGCTCCCGCCGGCCACGCAGGAGTTCGGGCAAAACACGCCTCGGCGCGGACAGTGCCTTCCGGCATCACGCATACTCAACGTGGAAGCACCCACCCCTCGTTCGACCCGTATGACCGTTATGGCCGAATCAGCGAAACTGCTCGAAATCAGCTCCCGGCAGTAGCAAGACTGCAGGTCGAGGAGC # Right flank : TCAGGTTTTCATCAGCAGAGTTCGGCGACCAGAGAGCTTTCCGGTTCTCGCACGCCGTACGTCCCAGCCGTGCCTCGCCTGCCGCACCGCCGATCGGTGAGTCCTGTTCCTGTCACCGGCTTGCTGCCCGCAATAGAGGCCGGGGCGGCGATGTCGCTCATCCGTCGATGAGCACGGGCCCGGAATGCGGCGCCCGGGCCCGTCTTGATGCAGGTTGCGCAAGGTCCGCTCCGCGCACGCTGGGTGGTCCCGAGTAACGTCGGACCGCAGGTCGCGCAGGGTCGTGCTCCGCGAATGTGGCTGTCGCATAAGGCGCTCTGGCGCCTGACAGGTACTCAGCGGACAATCGGTGCCACATTCTGTTGTCTGAGAGGGCTGGCATGGGTGTTCTGTGGCGGTTGGAGCCCGCTACGGCGGCCAAGCACCGTCTGTACCAGCGGTATCTGGATGCTTGGTGGCCGATCCTGCTGCAGACGTCCCAGCGCACCGGCTTCAGCAGG # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.55, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 38859-38339 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEXF010000005.1 Streptomyces sp. G44 NODE_5_length_138096_cov_10.779479, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 38858 29 96.6 32 .....................G....... TCCGTGACCGTGGCCGTGTCGGACGGAACGGC 38797 29 100.0 32 ............................. GCCGCGGACTACATGGACGAAGCCGCGAGCCT 38736 29 100.0 32 ............................. GTGGCCAGGGACAGAGTCCGAATGACCGGGGC TCG [38719] 38672 29 96.6 32 ....C........................ AGTCTGCTTCGCGATCTTCAAGATGCTCTGCG 38611 29 93.1 32 .............C...A........... GCCCCGCTGGCGGTGAACGCCACGGCGGTGGT 38550 29 96.6 12 ..........T.................. CAGAATGCGGAG Deletion [38510] 38509 28 65.5 0 CA.GC.T......G.-T....G..C.... - Deletion [38482] 38481 21 62.1 32 --------.....CT.T............ TCGACGTTGGTCGCGAAGCTCGGGAGGGCCCA 38428 29 79.3 32 C.........T..C...A...T...C... GTCGTGACGCAGCTCCGCACGCGGTCGCCTCG 38367 29 82.8 0 CC...........C.............TT | ========== ====== ====== ====== ============================= ================================ ================== 10 29 87.3 26 GTGCTCCCCGCGCTCGCGGGGATGGTCCC # Left flank : TTTGCGTGTAGACGCCCGCTGGGTTGAGGAGTCCCTGGAGGAGTTCGAGCGCCGGAGCGGCCGGGAGGTCGGTATCGATGACTGGGGTGCTCTGGCGGCCGCCGTGTACCGGCACGCCTACGAGCTGCACGCCGGAGAACCGTTCTACCTCGAAGCCCCGGTACGAGCGGCGATCCTGTTGCAGATGTTCGTCCTCACCCGCCCGCTGGCGGACTACAACGGCCTGGTCGGCTCAGCACTGGCCCTGCGGTACCTGCGCGAATCCGGAAGCCCTGTGAAACCACCCGCCGGAGGCCTTACCGAACTCGTCACCGGTATCCGCGACAACAGTCTCACCCTCCGCGGCATCGCATCCACCCTCCGCTCCTGGACCACCCCAGCCAACTAAGGTGCCCCCCTCAGCGCGGTGACATCTCCTCGACCGGTGTGACTGTTATGACCGAATCAGCGAAACTGCTCGAAAACAGCTTCTGGCAGTAACAAACCCGCAGGTCGAGAAG # Right flank : ACAGGGGCCAGTCATTGGGTTCTCCGTGTCCGGCCCGGGGGTGTGGCCCCTACGCTCGCTTGGTGCTCCCGCCGGCCACGCAGGAGTTCGGGCAAAACACGCCTCGGCGCGGACAGTGCCTTCCGGCATCACGCATACTCAACGTGGAAGCACCCACCCCTCGTTCGACCCGTATGACCGTTATGGCCGAATCAGCGAAACTGCTCGAAATCAGCTCCCGGCAGTAGCAAGACTGCAGGTCGAGGAGCGTGCTCCCCGCACGCGCGGGGATGGTCCCGGGGCCAGCCTTCCGAGGAAGGGCAGCGGCTTGTGCTCCCCGCACGCGCGGGGATGGTCCCAGGCCCGGCTCATCTACCAGTCCCGTCTGCAGCTGCTCCCCGCGCCCGCGGAGACGGTCCTCGGCCCACGACCAACACGCGCTTCGGTGCGGGCTGCTCCCCCCGCGTGCGGGGATGGTCCCAGTGGACGGCGGCGATCTCCGTTGCCGCTGAAGTGCTCCC # Questionable array : NO Score: 4.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.44, 5:0, 6:0.25, 7:-0.71, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCTCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGATGGTCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 40649-39706 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEXF010000005.1 Streptomyces sp. G44 NODE_5_length_138096_cov_10.779479, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 40648 29 100.0 32 ............................. GCCGATCTTCGAGGAGGCCGTATTCGCCGGAC 40587 29 100.0 32 ............................. GGAAGCCTCGCCGCCCCGGCGCGGCCGAACCG 40526 29 100.0 32 ............................. GCATCGTGAGGCGGGCCGCGTGGCCCGCCTCA 40465 29 100.0 32 ............................. CAGTGGCTGACCGTGACGCCCCATGTCCTTTC 40404 29 100.0 32 ............................. ACGGTCCGGGCCTGGACGAAGTCGCCGTGACG 40343 29 96.6 32 .....T....................... CCTCGGCTTCCAGCTTCTTCTTCCGGTCCTCG 40282 29 100.0 32 ............................. CGCAGCCGACGGCCGTCCCGTACTGGAGCGAC 40221 29 100.0 32 ............................. CAGCCGTCCCGGGCCGACGCCCACGACCTTGC 40160 29 100.0 33 ............................. GGCTGGCTGGACCTGGAGATGCACGCCGTGACG 40098 29 100.0 32 ............................. GAGGCTGTCGCGACCAGGACCTCACCGCCCGG 40037 29 100.0 32 ............................. CAGCCGTCCCGGGCCGACGCCCACGACCTTGC 39976 29 100.0 32 ............................. ATCTGGAACCTTCCTGGGGGTGAAGGCACGGA 39915 29 89.7 32 ...........G.C..........G.... GGGGCCCCTGCGGCGAGTGCGGGGCGTGGATC 39854 29 86.2 32 G..........G.C..........G.... CGGCTCGTGCAGAACTTCGACGGTGTGGAGTC 39793 29 93.1 32 .....................G..G.... CAGGAGCAAGCGCGCGCGGCGACGCTGGCGGC 39732 27 89.7 0 .............-.-........G.... | ========== ====== ====== ====== ============================= ================================= ================== 16 29 97.2 32 CTGCTCCCCGCACGCGCGGGGATGATCCC # Left flank : CCACGGTCGTGCTCCCCGCGCCCGCGGGGATGGCCCCAAACACCCCCGCGCCCTTCCGAGACTCTGCGACTGCTCCCCGGGATGGCCCCACCTTCACACACGTTCTCGCGACGCGGGTGGACTGCTCCCCGCACCCGCGGGGATGGCCCCGCGAACGTGGAGGATCGGCCCCTTGCCGCCGTGTGCTCCCCGCGCCTGCGGGGATGGTCCCCTTCGGGCCAGCATCTCCACCGTGCTCGATGCCTGCTTCCCTCACGCACGGGGATGGCTCAGCAGGAGTCGGCCCTTGGGTGTCGCGTGATGGGTACGCTCCTTGCCCGCAGGCGACTCTTGTGCTGGTTTGATACTCCCTCCGTCGGCCAAGACAGCACCTCCCGGCATCACGCATACTCGCCATGGAGAACTCACTCCACCCGATGACCTGTATGGGCGTTATGGCGGAATCGACGAAAGTGCTCGAAAGCGGCTCCCGGCAGTCGCAAACGTGCAGGTCGAGGAGT # Right flank : GACCTGGGGTTCGTCACGACGGGCTCGCTCGGCGTGGGCACTCCCACACGCGGAGGGTGGATCAAGCCAGTTGTCCTTTGCCGCCCCGCAGGTTCCTAGCAATTGCTAGTATGGCCGTATGGTGGCAGAGCAGAGGCAGTTGAATGTCCGGGTGGGAGTTCACACGCATGAGCGGCTCACGGCTCGCGCCAAGCGGCGCGGGATGACGGTGCAGGCGTATGTATCCGGCCTGGTGGAGAGCGAAGTCGACCCTGCCCGGGACGCTTTCGTCTCGGGGCTGGTCGATGACATGAATGAGCTGCTCGGCGAGTTCGAGGACACCTTCGAGGCGGGCAGTCGTTGATGTTTTTGCGTGTAGACGCCCGCTGGGTTGAGGAGTCCCTGGAGGAGTTCGAGCGCCGGAGCGGCCGGGAGGTCGGTATCGATGACTGGGGTGCTCTGGCGGCCGCCGTGTACCGGCACGCCTACGAGCTGCACGCCGGAGAACCGTTCTACCTCGA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCACGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCATGCGCGGGGATGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 41936-40877 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEXF010000005.1 Streptomyces sp. G44 NODE_5_length_138096_cov_10.779479, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ==================================================================================== ================== 41935 29 100.0 32 ............................. GGCCCGGTGCTCGTCGACGGCCGGTTGATGGG 41874 29 100.0 32 ............................. GCGGCGGGGCGGCCGGGCCATGAGGCTCCGGC 41813 29 100.0 32 ............................. GGCGGCGGCAAGGGCCGCGCCGGTCAGCGGCT 41752 29 100.0 32 ............................. CACATCATGCCGCGATGGCAGGACACCGCGCT 41691 29 100.0 32 ............................. GAGAAGCGCCGGAACTCCGGCGGATCTGGGAT 41630 29 100.0 32 ............................. CGTTCGCGGTCGGGTTCCTCGCGGCGTTCGAC 41569 29 100.0 32 ............................. GAGCTGCCCGGCGAGGGTCCTGCCCGCGCGCA 41508 29 100.0 34 ............................. TGATCATGTGTGAACGTCAGCCAGGCCACCGCTT 41445 29 100.0 32 ............................. ACCCCCTGATCGCCGCGGTGGCGGGGTGCTGA 41384 29 100.0 32 ............................. CAGGTGTGGAGGACCGATTCGTCCGGGCGCGT 41323 29 96.6 32 ............................T CTTCATGGCGTCGCGGCGGAAGAGGGGCAGGA 41262 29 100.0 32 ............................. GCATCGGCCGGCGGCGCCGGATGGGGGCTCGG 41201 29 100.0 32 ............................. TCACGCCGCGGATGCTGGCGGCGGCCACGGTC 41140 29 100.0 84 ............................. AAACACCCCCGCGCCCTTCCGAGACTCTGCGACTGCTCCCCGGGATGGCCCCACCTTCACACACGTTCTCGCGACGCGGGTGGA 41027 29 93.1 32 C..........A................. GCGAACGTGGAGGATCGGCCCCTTGCCGCCGT 40966 29 96.6 31 ..............T.............. TTCGGGCCAGCATCTCCACCGTGCTCGATGC T [40941] 40905 29 72.4 0 C....T...T.A.G.A..........T.A | ========== ====== ====== ====== ============================= ==================================================================================== ================== 17 29 97.6 35 GTGCTCCCCGCGCCCGCGGGGATGGCCCC # Left flank : ACCGGCCGGGGCCGGGTGCCGGGCCGGGTGCTCCCCGCGCCCGCGGGGATGGTCCGGCTGGGTACAGCGCCGGATTGCCGCATTTTCCGTGCTCCCCGCGCCCGCGGGGGTGGTTCCCTGCACGTCAGAACGTGTGGTCACGGGGTCCGGTGCTCCCCGCGCCTGCGGGGATGGTCCCTGCCCATCTCCGTCGTCTGGGCGGCCGCTCCGGGGGGGCCGTATCTCGCAACCGCGGGAATGGCCCTGACCTCCGGGGCATGATGCTGTCGGTGTTGTGCCGATCTTGTTCGTGGAGAGCACCTCTGCCGACTTGGCGCTTCTTGCCAGCCGGGCAGCGATTGCGCGTCGACACGACTTGTGCGCGGACAGGCGTTCCGGCATCGCGCATACTTAATGTACAGATCTCCCTTGCCCGTTCGACCCGTATGGCCGTTATGGCCGAATCAGCGAAAGTGCTCGAAATCAGCTCCTGGCAGTAACAAACCCGCAGGTCGAGAAGT # Right flank : GCAGGAGTCGGCCCTTGGGTGTCGCGTGATGGGTACGCTCCTTGCCCGCAGGCGACTCTTGTGCTGGTTTGATACTCCCTCCGTCGGCCAAGACAGCACCTCCCGGCATCACGCATACTCGCCATGGAGAACTCACTCCACCCGATGACCTGTATGGGCGTTATGGCGGAATCGACGAAAGTGCTCGAAAGCGGCTCCCGGCAGTCGCAAACGTGCAGGTCGAGGAGTCTGCTCCCCGCACGCGCGGGGATGATCCCGCCGATCTTCGAGGAGGCCGTATTCGCCGGACCTGCTCCCCGCACGCGCGGGGATGATCCCGGAAGCCTCGCCGCCCCGGCGCGGCCGAACCGCTGCTCCCCGCACGCGCGGGGATGATCCCGCATCGTGAGGCGGGCCGCGTGGCCCGCCTCACTGCTCCCCGCACGCGCGGGGATGATCCCCAGTGGCTGACCGTGACGCCCCATGTCCTTTCCTGCTCCCCGCACGCGCGGGGATGATCC # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:-0.23, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGATGGCCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 5 42958-42258 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEXF010000005.1 Streptomyces sp. G44 NODE_5_length_138096_cov_10.779479, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 42957 29 93.1 32 C.........T.................. GAGGCCCTCGACGAGCTGGAGCGCCGCGGCGA 42896 29 100.0 32 ............................. TCCGTGCACCTACCTACCCAGGCGGTGACCCA 42835 29 100.0 32 ............................. GCGGTCAAGACGAAGGCGCTGACGCCGACCGA 42774 29 100.0 32 ............................. GGCGTAGGAGGGTCTCGTAGTCCGGCTCAGGC 42713 29 100.0 32 ............................. CCCCGCCGGACGCGTCATCGTGGTGCGCAGCA 42652 29 100.0 32 ............................. TCCGTGCACCTACCTACCCAGGCGGTGACCCA 42591 29 100.0 32 ............................. GTGCCGTTGAACCTCTCCACCTTCCCGTTCGT 42530 29 100.0 32 ............................. CCCACCACGGGATTACTCTGTCGTTTCACTAG 42469 29 100.0 32 ............................. CAGTAACCGGCCGGGGCCGGGTGCCGGGCCGG 42408 29 96.6 32 ............................G GCTGGGTACAGCGCCGGATTGCCGCATTTTCC 42347 29 93.1 32 .....................G....T.. CTGCACGTCAGAACGTGTGGTCACGGGGTCCG 42286 29 96.6 0 ..............T.............. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 98.3 32 GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Left flank : GCCTTGCCTATGTCATGCACAGCCGCCAGCCACATCACCAGACACCGGCCATCTCCCGCCCCACCCGGTAACGCATCCGCAACCAGCGCCCGGACATTCGCGGGCAGCCACTCATCCCACAACAGCCCGGCCACCGCCGCACTGTCCGCCATGTGCCGCCACAACGGCAGCCACCCCTCGGCATCCCGGTCGTGCTTGGCCCACACCGAACGCACCGGCCCCACCAGACGCCCCCCGAGCCCCGCACTGGACGACTCCCTCGCAACAGTCATGCCAGAGGCATACATGCATACCCGGGGCCACGGAGCCGATACGGAGAAAACGCGCCGCTGTACGACAGATCAAGGAAAATGGAGGCCCCAGCCCATGGCATTGCGTAGTACCCGGGCCTTCCACACACTCAATCAACCGCCCAGTCACCCCATATAGGCGTTATGGCCGACTCAGCGCAAGTACTCGGAATCAGCTCCCGGCAGTGACAAACCTGCAGGTCATGGAGT # Right flank : TGCCCATCTCCGTCGTCTGGGCGGCCGCTCCGGGGGGGCCGTATCTCGCAACCGCGGGAATGGCCCTGACCTCCGGGGCATGATGCTGTCGGTGTTGTGCCGATCTTGTTCGTGGAGAGCACCTCTGCCGACTTGGCGCTTCTTGCCAGCCGGGCAGCGATTGCGCGTCGACACGACTTGTGCGCGGACAGGCGTTCCGGCATCGCGCATACTTAATGTACAGATCTCCCTTGCCCGTTCGACCCGTATGGCCGTTATGGCCGAATCAGCGAAAGTGCTCGAAATCAGCTCCTGGCAGTAACAAACCCGCAGGTCGAGAAGTGTGCTCCCCGCGCCCGCGGGGATGGCCCCGGCCCGGTGCTCGTCGACGGCCGGTTGATGGGGTGCTCCCCGCGCCCGCGGGGATGGCCCCGCGGCGGGGCGGCCGGGCCATGAGGCTCCGGCGTGCTCCCCGCGCCCGCGGGGATGGCCCCGGCGGCGGCAAGGGCCGCGCCGGTCAG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCCCGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 6 52635-53883 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEXF010000005.1 Streptomyces sp. G44 NODE_5_length_138096_cov_10.779479, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 52635 29 100.0 32 ............................. ATCGGCGTCCTCGCCCAGGGCAAGCCCGGCCG 52696 29 100.0 32 ............................. CGGGCCGGGGCCGTGGACATCACCCGCGACGT 52757 29 100.0 32 ............................. GACCCCGGAAAGGTCTTCCCCGACTTCCCCAA 52818 29 96.6 32 ............................G TGAAGACGCGCTCGGCGAGGCTCTTCGGGTAG 52879 29 100.0 32 ............................. GGCCCCCAGTACGCCGCGAGTACGGTCCCCAT 52940 29 100.0 32 ............................. GCACCGCCGAGCGGGTGCAGCTCGACGGACTT 53001 29 100.0 32 ............................. GCGCCGCTGCGCATGGCAGCCCGCAAGGACCT 53062 29 100.0 32 ............................. ACGCACGTCTTCTTCTCCGACCACCTCGACAC 53123 29 100.0 32 ............................. GCGCGCACCGCCTCCGCCCTCTTGGGCGCCTG 53184 29 100.0 32 ............................. GCGCCCACATCCTCTACGTCGTCCACCCCGAC 53245 29 100.0 32 ............................. GCACCGCCACCGCCCCGCCCTCGACCACCGGC 53306 29 100.0 32 ............................. GGCAGCGGCTTCGCCCTGGAGGTCTCCTTGCC 53367 29 100.0 32 ............................. GCCGGGTCGCCCCAGTAGATGTCGGTCAGCTG 53428 29 100.0 32 ............................. CAGTAACCGGCCGGGGGCGCCGGGGGCCGGGG 53489 29 100.0 32 ............................. ACCCGCTGATCGGCTCCTGATTGGCAAGCCAT 53550 29 96.6 32 ............................T CAGAACGCGGCCAAGAGCGGTGCGCAGACGCA 53611 29 100.0 32 ............................. CGGTGATCGACTCACGACCCGGCCCTCTAGGG 53672 29 96.6 32 .....................C....... ATCAAGACCGGTGCTGATGACACCGTTGGCGG 53733 29 100.0 32 ............................. CGGTAGGCGTATCCGCGCATGGTCACGGTGTC 53794 29 100.0 32 ............................. TTTTTGACCTGCGGCTTTACAATTTTCGTTAG 53855 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.5 32 GTGCTCCCCGCGCCTGCGGGGATGGTCCC # Left flank : AGCTGGAGTGAACTACGGCTCCAAGGACCCTGCCACAGACGCCGAAGAGGCGGTCATCTGGTGACCGTCATCGTCCTCACCACCTGCCCACCCGGACTCCGCGGATTCCTCACCCGCTGGCTTCTCGAGATCTCCGCAGGTGTCTTCATCGGCGACCCCTCCGCTCGGGTGCGCGACGTCTTGTGGAACGAGGTCCAGCGATACGCGGGCCAGGGCCGCGCTCTGCTCGCCCACACCACTAACAACGAGCAGGGCTTCACTTTTCGTACCCATGACCATGCCTGGCACCCAACAGACCATGAAGGCCTGACCCTAATCCACCGGCCAAACAAAAAGCCTCCACAAGATTCTGTCGCGCCAAACCCCGGCTGGAGCAATGCTGCAAAACGTCGCCGCTTCGGCAGAGGATGACCACTTCAGGCTATTCGTCGCTTTGGCCCGATTCAGAGAAACTGCTCCGAATCGGCTTCTCAGTCTGAGAAAACAGCAGGTCGGGCAGT # Right flank : CGCTCGTAGAGGGCGGGGATACGTCGCAGTGACGAACGAGGGAAGGGGAGAGGGGGCCATGTTGCAGACGCGCGCCCTGACCCGTGAGGCCGGGCGGGCACGGCAGCTCCTGGTCGCCGGGGAATGGCGCCCTGCCGCGGCGGACTCCGAAGCAGCAGCGCGCGTCCTGGCCCGCCTCACAGCCCCGCTCCCAACCCGGCGGGCAGCGGCGACCACGCAGACGCTGGCCACGGACCGGGACCGGCGCCTCCAACGCATCCTGCGAACCACCATCCACCACCTCGACGCAGGCGCAGTCAGCCCGCCCGCAGCCGCCCTCCTGGCCGCCGTCGCCCGCGCCTTCTTGCCTTGGCACACCACCCCTAACCCACCGCCCGCAGCGGCGGCCCCGAGATACGGGACCCCGGTGGGAACGGCTGACGGCCCGGCCGTGCCACCAACAGAGGTGGGCGAGGCCCTGCTTCCCGATCTGATCGAACTGTTCGCCGTGCTGGCCTCGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCCTGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCCTGCGGGGTTGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-33.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //