Array 1 14091-14258 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV816471.1 Neisseria sp. HMSC066B07 Scaffold164, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 14091 36 75.0 30 T.GAATAGC.T......................... GTCTTCCAGCAAGATACGTAGCCAGTCCGC 14157 36 100.0 30 .................................... TCGCTCCGCGTTTGATGATCAGCTTATAAG 14223 36 88.9 0 ................................NNNN | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 88.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : GACATTAGGTTCCAAATTAGAAGCTTGGCCGCCTGTAGGCTTAGAAAAGCCGTAAGTTTGAAGATTAAAGGATAATGACATGCGTCATCGTAATGGCAACCGCAAATTAAACCGTACTAGCAGCCACCGTGCTGCGATGCTGCGCAATATGGCGAATTCCTTGTTGACTCACGAAACCATCGTGACAACTTTGCCTAAAGCAAAAGAATTGCGCCGCGTAGTTGAGCCCTTGATCACCTTGGGTAAAAAACCTTCTTTGGCAAACCGTCGTTTGGCTTTTGACCGCACTCGCGATCGTGATGTTGTAGTTAAATTGTTTGACGAATTGGGTCCACGCTTTGCTGCTCGTAACGGCGGCTATGTTCGTGTACTGAAATACGGTTTCCGTAAAGGCGACAATGCTCCTTTGGCATTGGTTGAATTGGTTGAAAAAGCAGCTGATTCTGCTGAATAAGCAAATTGATATGAAAGCACTACCTGTTTAGGTGGTGCTTTTTTAT # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTCAATGGGTTTGTTCAGTACAGTCTGAACCGTTTTAGCTCCCTTTCTCATTTCGCAGTGCTACAATAAACTCTGAATGCGTTGGAGTAAAAATGGCGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATATCTACGGCAAACACTGTACCTAAGTACACGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTCCCTTTCTCATTTCGCAGTGCTACAATAAAGTAGAATACAAGTATGTGCCTAGGTAGGTTGTAGCTCCCTTTC # Questionable array : NO Score: 4.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.40, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 2 15002-15301 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV816471.1 Neisseria sp. HMSC066B07 Scaffold164, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 15002 36 88.9 30 NNNN................................ GGAGGTTAAGCCGCCAAACACAAAACACCC 15068 36 100.0 30 .................................... CGGAATATATTGCCAAGATAGACACGACAG 15134 36 100.0 30 .................................... CGCAAATGTGATATTGCCTTTATAGACGAC 15200 36 100.0 30 .................................... TTCGGTAACTATCTGAAGTGTACTCATCAA 15266 36 88.9 0 ................................NNNN | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 95.6 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TTTCGCAGTGCTACAATATCTACGGCAAACACTGTACCTAAGTACACGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTCCCTTTCTCATTTCGCAGTGCTACAATAAAGTAGAATACAAGTATGTGCCTAGGTAGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTGTTTGGGTATTAAGTGGGTGGTTTGCCCAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATACGGTACAGCCAAACATACAAGCGCGGCTTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAGCTCCCTTTCTCATTTCGCAGTGCTACAATACTTTGCCCAGTCTATATTGTGTGCAACGGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATACCTCAACGGGAAATCCTTATTTTATAAGGGTTTCCCGTTTTATTTTGTCTAAAAAATGAGCTTAAAATAATAATAGTTGGTCTGAATTTACTCTTTTTTCTTGGGTTTTTAGCTCTCCCAATAGTAGTTTCATGGTGGCATATTGCTTTTCCGTTACTTCCAAACAGCGGATTGACCCTTCTTGCGGTAGGTTTGCACATAGCCTGTTGTGGTGTTTTTGCAACGAATCTCGACCTTTGACAATACGGCTGTATACGGAAAGCTGGAGCATTTGGTATCCATCTTTTAATAGAAACTGGCGGAA # Questionable array : NO Score: 5.84 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 1 68706-68870 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV816529.1 Neisseria sp. HMSC066B07 Scaffold565, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 68706 33 97.0 33 A................................ ATAGAATCAGGGTCAACAAGGTTATCAACCGCC 68772 33 100.0 33 ................................. CATCAAGATATTTAACACCAGCGCATCACATAT 68838 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================= ================== 3 33 99.0 34 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : AACCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGGAAAGTGGAACACCACGGCGCAAAACCGACGGTGGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTGTTGTTCTCATGAAAATGTGGCAGGATTAGCGAATTAGGATTGTTCTTTAACAATCAGGATATTGCAAATGTGGGTATAACAGAAAAGGCTGTGTTATACTCGCATTTCTGCTTTTCTTGAGAGTTTAGCGAGATTAGGCTTGCGAAACCTGATGTAGCAAGGCTTTTGAGAGAGGCACCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCCAAGAGTTCAAGCCGAAACGCCGACAGTTGGA # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCTGATACACCATACGGCCCGATTCGGGCGGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAATACTGCGTCAATGTCTTTTTTATTTGGTTTACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTATTTGGTATTAAGTTATTTAATAGGAAATATATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTATTAAGATACAGATAAGATAACAGATGATTCATCCAGCCG # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 68969-69198 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV816529.1 Neisseria sp. HMSC066B07 Scaffold565, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 68969 33 93.9 32 NN............................... CCTGATACACCATACGGCCCGATTCGGGCGGA 69034 33 97.0 33 C................................ CAATACTGCGTCAATGTCTTTTTTATTTGGTTT 69100 33 97.0 33 A................................ TATTTGGTATTAAGTTATTTAATAGGAAATATA 69166 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================= ================== 4 33 97.0 33 TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TAGGCTTGCGAAACCTGATGTAGCAAGGCTTTTGAGAGAGGCACCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCCAAGAGTTCAAGCCGAAACGCCGACAGTTGGAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATAGAATCAGGGTCAACAAGGTTATCAACCGCCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCATCAAGATATTTAACACCAGCGCATCACATATCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTATTAAGATACAGATAAGATAACAGATGATTCATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAAAATTCGGCCTTGCAGACGCCAGGCAATGGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAGCAAATCGGCGGCGTGCCGGTTACTCTTTATCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCATCTGACACCCTTCCTCTCTGCCATAGATACTTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCATGGCTGGAAGACGTCTATCTCTCCGGTTCGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTTGTGATTGTTGAGTAATGACAGCCGGAAAGACGCCAG # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 69296-69658 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV816529.1 Neisseria sp. HMSC066B07 Scaffold565, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 69296 33 90.9 33 NNN.............................. TATTAAGATACAGATAAGATAACAGATGATTCA 69362 33 100.0 32 ................................. CAAAATTCGGCCTTGCAGACGCCAGGCAATGG 69427 33 97.0 34 C................................ CAGCAAATCGGCGGCGTGCCGGTTACTCTTTATC 69494 33 97.0 34 G................................ CATCTGACACCCTTCCTCTCTGCCATAGATACTT 69561 33 100.0 32 ................................. CATGGCTGGAAGACGTCTATCTCTCCGGTTCG 69626 33 97.0 0 G................................ | ========== ====== ====== ====== ================================= ================================== ================== 6 33 97.0 33 TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGTTGAAACCATCAAGATATTTAACACCAGCGCATCACATATCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCTGATACACCATACGGCCCGATTCGGGCGGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAATACTGCGTCAATGTCTTTTTTATTTGGTTTACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTATTTGGTATTAAGTTATTTAATAGGAAATATATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CCTTGTGATTGTTGAGTAATGACAGCCGGAAAGACGCCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAGTCCATCCGCAGAGGGGATTGGTGCAGCGCAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAACCTTTGGTAAATAATATCGAGTTCAGGGATAAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGCCAATCTTCGCCGAGCTTCCCGTACTTCTTGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 4 69819-70049 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV816529.1 Neisseria sp. HMSC066B07 Scaffold565, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 69819 33 90.9 33 NNN.............................. CAGTCCATCCGCAGAGGGGATTGGTGCAGCGCA 69885 33 97.0 34 A................................ AACCTTTGGTAAATAATATCGAGTTCAGGGATAA 69952 33 100.0 32 ................................. CGCCAATCTTCGCCGAGCTTCCCGTACTTCTT 70017 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 4 33 97.0 33 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GTGTTGAAACTATTAAGATACAGATAAGATAACAGATGATTCATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAAAATTCGGCCTTGCAGACGCCAGGCAATGGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAGCAAATCGGCGGCGTGCCGGTTACTCTTTATCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCATCTGACACCCTTCCTCTCTGCCATAGATACTTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCATGGCTGGAAGACGTCTATCTCTCCGGTTCGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTTGTGATTGTTGAGTAATGACAGCCGGAAAGACGCCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATCGGCTCGGCTCGGCGGAAGTTTTCGGCTTCGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCATTAATCGCGCAATGCCTGAACCATTTGCAGTAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACCTTCATAGGCTGAGTGTTGCTCTGATTTTCAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATTTTTATAAAACGGGAGGGCGCGTGAGATTACCCCCAGC # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 70148-70379 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV816529.1 Neisseria sp. HMSC066B07 Scaffold565, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 70148 33 93.9 33 NN............................... ATCGGCTCGGCTCGGCGGAAGTTTTCGGCTTCG 70214 33 97.0 34 C................................ CATTAATCGCGCAATGCCTGAACCATTTGCAGTA 70281 33 100.0 33 ................................. ACCTTCATAGGCTGAGTGTTGCTCTGATTTTCA 70347 33 97.0 0 ................................N | ========== ====== ====== ====== ================================= ================================== ================== 4 33 97.0 34 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGTGTTGAAACCTTGTGATTGTTGAGTAATGACAGCCGGAAAGACGCCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAGTCCATCCGCAGAGGGGATTGGTGCAGCGCAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAACCTTTGGTAAATAATATCGAGTTCAGGGATAAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGCCAATCTTCGCCGAGCTTCCCGTACTTCTTGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATTTTTATAAAACGGGAGGGCGCGTGAGATTACCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGACGTTATTGAGCCTAGTAAAGACAAGCTTGGAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTGCGACCCATTCGACAAAACCAATCGCCAACACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCCTGCCGTCCGTATAATTCGATTCAACAGTTAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTGCTCCGTTTAGTTTGGTAGGCCGTCTGAAATTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.40,-4.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 6 70544-70843 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV816529.1 Neisseria sp. HMSC066B07 Scaffold565, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================ ================== 70544 35 94.3 32 .................................GA CGTTATTGAGCCTAGTAAAGACAAGCTTGGAG 70611 35 97.1 31 ..................................T GCGACCCATTCGACAAAACCAATCGCCAACA 70677 35 91.4 31 ................................CCC TGCCGTCCGTATAATTCGATTCAACAGTTAA 70743 35 100.0 31 ................................... CTCCGTTTAGTTTGGTAGGCCGTCTGAAATT 70809 35 91.4 0 ................................NNN | ========== ====== ====== ====== =================================== ================================ ================== 5 35 94.8 32 CCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTG # Left flank : TGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATCGGCTCGGCTCGGCGGAAGTTTTCGGCTTCGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCATTAATCGCGCAATGCCTGAACCATTTGCAGTAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACCTTCATAGGCTGAGTGTTGCTCTGATTTTCAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATTTTTATAAAACGGGAGGGCGCGTGAGATTACCC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTCGGGCGTGTTGATTTGGATGGCTTTATTGGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCTCCGCCCTGACCGCCGACATCACGCACACAACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGATTGGCCCTACATACCGGAGCATTAATTTGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGCCGATGACAGGCGGAAGTCCTGCTGTTGGCAGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTTTCGGCGGCGCTGCCTGTTTCTTTAGGCTTTCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.72 # Score Detail : 1:0, 2:3, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 7 70939-71301 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV816529.1 Neisseria sp. HMSC066B07 Scaffold565, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 70939 33 93.9 32 NN............................... TTCGGGCGTGTTGATTTGGATGGCTTTATTGG 71004 33 97.0 33 T................................ CCTCCGCCCTGACCGCCGACATCACGCACACAA 71070 33 100.0 32 ................................. GGATTGGCCCTACATACCGGAGCATTAATTTG 71135 33 97.0 34 G................................ TGCCGATGACAGGCGGAAGTCCTGCTGTTGGCAG 71202 33 100.0 34 ................................. CTTTCGGCGGCGCTGCCTGTTTCTTTAGGCTTTC 71269 33 93.9 0 G...............................N | ========== ====== ====== ====== ================================= ================================== ================== 6 33 97.0 33 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATTTTTATAAAACGGGAGGGCGCGTGAGATTACCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGACGTTATTGAGCCTAGTAAAGACAAGCTTGGAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTGCGACCCATTCGACAAAACCAATCGCCAACACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCCTGCCGTCCGTATAATTCGATTCAACAGTTAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTGCTCCGTTTAGTTTGGTAGGCCGTCTGAAATTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGAGTATGGCAACAGTATTATCCGGATGGTTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGTCGGTAGGACATTATCAGTACAAATGGCTGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATCAAGATAGCGTAAGCAGACGGTGGGATACCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGGGGCTTGCGCCCCCTGTTTTTATTTGGTGTAGCCAGC # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 8 71401-71565 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV816529.1 Neisseria sp. HMSC066B07 Scaffold565, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================ ================== 71401 34 97.1 31 .................................C GAGTATGGCAACAGTATTATCCGGATGGTTT 71466 34 97.1 32 .................................G GTCGGTAGGACATTATCAGTACAAATGGCTGA 71532 34 100.0 0 .................................. | ========== ====== ====== ====== ================================== ================================ ================== 3 34 98.1 32 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTCGGGCGTGTTGATTTGGATGGCTTTATTGGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCTCCGCCCTGACCGCCGACATCACGCACACAACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGATTGGCCCTACATACCGGAGCATTAATTTGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGCCGATGACAGGCGGAAGTCCTGCTGTTGGCAGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTTTCGGCGGCGCTGCCTGTTTCTTTAGGCTTTCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : AATCAAGATAGCGTAAGCAGACGGTGGGATACCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGGGGCTTGCGCCCCCTGTTTTTATTTGGTGTAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATTAATGGTTGACTAGATATAACGCAAGTTATACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCACTCTGGCAAGTCGCCCACATCCTGCCCCACGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCG # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 9 71729-71959 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV816529.1 Neisseria sp. HMSC066B07 Scaffold565, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 71729 33 93.9 33 NN............................... TGGGGCTTGCGCCCCCTGTTTTTATTTGGTGTA 71795 33 97.0 33 G................................ AATTAATGGTTGACTAGATATAACGCAAGTTAT 71861 33 100.0 33 ................................. CACTCTGGCAAGTCGCCCACATCCTGCCCCACG 71927 33 97.0 0 ................................N | ========== ====== ====== ====== ================================= ================================= ================== 4 33 97.0 33 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGAAACCTTTCGGCGGCGCTGCCTGTTTCTTTAGGCTTTCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGAGTATGGCAACAGTATTATCCGGATGGTTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGTCGGTAGGACATTATCAGTACAAATGGCTGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATCAAGATAGCGTAAGCAGACGGTGGGATACCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTACGCAAAACAAACCCAAGAGCCGCCGGAAATACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCTTGAGTTTGATTTTATTTAGGCGTTGGCTCTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACATTTAACGGCCTCGAATCCAGCGCCACCGAAGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACCATCAGGCGAAGCCACAACCGCCGGCGGGCAGCCCCAGCCGC # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 10 72057-72288 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV816529.1 Neisseria sp. HMSC066B07 Scaffold565, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 72057 33 93.9 33 NN............................... TACGCAAAACAAACCCAAGAGCCGCCGGAAATA 72123 33 100.0 33 ................................. TCTTGAGTTTGATTTTATTTAGGCGTTGGCTCT 72189 33 97.0 34 T................................ ACATTTAACGGCCTCGAATCCAGCGCCACCGAAG 72256 33 97.0 0 ................................N | ========== ====== ====== ====== ================================= ================================== ================== 4 33 97.0 34 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GTTGAAACAATCAAGATAGCGTAAGCAGACGGTGGGATACCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGGGGCTTGCGCCCCCTGTTTTTATTTGGTGTAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATTAATGGTTGACTAGATATAACGCAAGTTATACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCACTCTGGCAAGTCGCCCACATCCTGCCCCACGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACCATCAGGCGAAGCCACAACCGCCGGCGGGCAGCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATTTCAAGTCTCCGGGAAGGTTGTTTAGGAGCTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGTTGGCTATACGCTCTGCGGCCGCCTTTTGCTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGCCGTTGCCGCCGCTGCCGTGGCAGAGCGTTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGCACTGGTGGGCAGGTGTCAGCGGCTTGGATGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCGATGACTTCGAGGTCGCCATCACTAAAACCTAACCAGC # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 11 72450-72879 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV816529.1 Neisseria sp. HMSC066B07 Scaffold565, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 72450 33 100.0 34 ................................. ATTTCAAGTCTCCGGGAAGGTTGTTTAGGAGCTT 72517 33 100.0 33 ................................. TGTTGGCTATACGCTCTGCGGCCGCCTTTTGCT 72583 33 97.0 33 T................................ TGCCGTTGCCGCCGCTGCCGTGGCAGAGCGTTT 72649 33 100.0 33 ................................. GGCACTGGTGGGCAGGTGTCAGCGGCTTGGATG 72715 33 97.0 34 G................................ TCGATGACTTCGAGGTCGCCATCACTAAAACCTA 72782 33 97.0 32 A................................ AGGTCAAAAATACGAAGTATTCACTAACGTGA 72847 33 93.9 0 ...............................NN | ========== ====== ====== ====== ================================= ================================== ================== 7 33 97.8 33 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTACGCAAAACAAACCCAAGAGCCGCCGGAAATACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCTTGAGTTTGATTTTATTTAGGCGTTGGCTCTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACATTTAACGGCCTCGAATCCAGCGCCACCGAAGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACCATCAGGCGAAGCCACAACCGCCGGCGGGCAGC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTGACTTGGCAATCGAGTAATGGGCGATCGGGTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGTCAAAGGGCTACATGCCACCCGTGCGAGCCAAATAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTTGAGGACTACCAAGACGTTTACAGTCTTTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCAAAATTGTATCTTTCCCCATTTTCTCAACCTCCCAGCCGC # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [31.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 12 72976-73143 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV816529.1 Neisseria sp. HMSC066B07 Scaffold565, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 72976 33 93.9 33 NN............................... CTGACTTGGCAATCGAGTAATGGGCGATCGGGT 73042 33 97.0 36 T................................ GTCAAAGGGCTACATGCCACCCGTGCGAGCCAAATA 73111 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 3 33 97.0 35 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TTGAAACATTTCAAGTCTCCGGGAAGGTTGTTTAGGAGCTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGTTGGCTATACGCTCTGCGGCCGCCTTTTGCTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGCCGTTGCCGCCGCTGCCGTGGCAGAGCGTTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGCACTGGTGGGCAGGTGTCAGCGGCTTGGATGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCGATGACTTCGAGGTCGCCATCACTAAAACCTAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGGTCAAAAATACGAAGTATTCACTAACGTGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CTTTTGAGGACTACCAAGACGTTTACAGTCTTTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCAAAATTGTATCTTTCCCCATTTTCTCAACCTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATAAATAAGAGCAAGTGCCAGTGCGGCGTTGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCCACAAAACTCAACCCCTCGCGCTCCAACTTGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACGGCAAATTCTGGAAGGTGTTGCCGTTGGACTTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 13 73304-73600 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV816529.1 Neisseria sp. HMSC066B07 Scaffold565, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 73304 33 87.9 33 NNNN............................. TCAAAATTGTATCTTTCCCCATTTTCTCAACCT 73370 33 100.0 32 ................................. AATAAATAAGAGCAAGTGCCAGTGCGGCGTTG 73435 33 100.0 33 ................................. TCCACAAAACTCAACCCCTCGCGCTCCAACTTG 73501 33 97.0 34 T................................ ACGGCAAATTCTGGAAGGTGTTGCCGTTGGACTT 73568 33 87.9 0 T.............................NNN | ========== ====== ====== ====== ================================= ================================== ================== 5 33 94.6 33 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGTGTTGAAACAGGTCAAAAATACGAAGTATTCACTAACGTGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTGACTTGGCAATCGAGTAATGGGCGATCGGGTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGTCAAAGGGCTACATGCCACCCGTGCGAGCCAAATAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTTGAGGACTACCAAGACGTTTACAGTCTTTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAACGAATTATCGAAGAAGTATGGTACGAATTTGGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGGTTTGAAGCCTTTGACGACTGCCGGCGTTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAGTATGTTGGAGGAGGACAACATCTTTGAGCTTCCAGCCACCTTCGGGCGGCTGTGTGTTGAAACCCATAATACCGGCTGTTTCTTTTGGCCCACCATATCCAGCCGCCTTCGGGCGGCTGTGTATTGAAACTAAGATAGTCGGTTCGTCATTTTTTTCTACGAACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [3-3] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 14 73695-73993 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV816529.1 Neisseria sp. HMSC066B07 Scaffold565, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 73695 33 90.9 35 NNN.............................. AACGAATTATCGAAGAAGTATGGTACGAATTTGGA 73763 33 100.0 32 ................................. TGGTTTGAAGCCTTTGACGACTGCCGGCGTTT 73828 33 100.0 33 ................................. CAGTATGTTGGAGGAGGACAACATCTTTGAGCT 73894 33 93.9 34 T......A......................... CCATAATACCGGCTGTTTCTTTTGGCCCACCATA 73961 33 93.9 0 T........................A....... | ========== ====== ====== ====== ================================= =================================== ================== 5 33 95.7 34 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCAAAATTGTATCTTTCCCCATTTTCTCAACCTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATAAATAAGAGCAAGTGCCAGTGCGGCGTTGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCCACAAAACTCAACCCCTCGCGCTCCAACTTGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACGGCAAATTCTGGAAGGTGTTGCCGTTGGACTTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CTAAGATAGTCGGTTCGTCATTTTTTTCTACGAACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCGTATGCCCTACCCGTAGCGTTCGGTGGATGGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATTTCCCCCCTACCTTTAAAAACTTAACTAAATCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAGCCGTTGTCGCATCGGGAATATGCCGGTAAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGTGTAACAAGCGTTGATGCAAATAGTTTCAAACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGCTGTTGGGTTTAGAACTTTGTAAAGACTTGAGCCCAGC # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [2-2] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 15 74157-74453 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV816529.1 Neisseria sp. HMSC066B07 Scaffold565, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 74157 33 93.9 33 NN............................... TCGTATGCCCTACCCGTAGCGTTCGGTGGATGG 74223 33 100.0 34 ................................. ATTTCCCCCCTACCTTTAAAAACTTAACTAAATC 74290 33 100.0 32 ................................. CAGCCGTTGTCGCATCGGGAATATGCCGGTAA 74355 33 97.0 33 A................................ CGTGTAACAAGCGTTGATGCAAATAGTTTCAAA 74421 33 97.0 0 C................................ | ========== ====== ====== ====== ================================= ================================== ================== 5 33 97.6 33 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAACGAATTATCGAAGAAGTATGGTACGAATTTGGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGGTTTGAAGCCTTTGACGACTGCCGGCGTTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAGTATGTTGGAGGAGGACAACATCTTTGAGCTTCCAGCCACCTTCGGGCGGCTGTGTGTTGAAACCCATAATACCGGCTGTTTCTTTTGGCCCACCATATCCAGCCGCCTTCGGGCGGCTGTGTATTGAAACTAAGATAGTCGGTTCGTCATTTTTTTCTACGAACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CGCTGTTGGGTTTAGAACTTTGTAAAGACTTGAGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTTACCGCTTCTTGCGCAGGTTTTTCCTGCTTAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGCGTATTATCATCAAACCCCTTAAACAATTAGGAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTGCTGTGCATCTGCGGACGGTTCGTCGGTGTCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCAG # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 16 74682-74848 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV816529.1 Neisseria sp. HMSC066B07 Scaffold565, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 74682 33 100.0 35 ................................. AGCGTATTATCATCAAACCCCTTAAACAATTAGGA 74750 33 100.0 33 ................................. CTGCTGTGCATCTGCGGACGGTTCGTCGGTGTC 74816 33 93.9 0 ...............................NN | ========== ====== ====== ====== ================================= =================================== ================== 3 33 98.0 34 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GTTGAAACTCGTATGCCCTACCCGTAGCGTTCGGTGGATGGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATTTCCCCCCTACCTTTAAAAACTTAACTAAATCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAGCCGTTGTCGCATCGGGAATATGCCGGTAAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGTGTAACAAGCGTTGATGCAAATAGTTTCAAACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGCTGTTGGGTTTAGAACTTTGTAAAGACTTGAGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTTACCGCTTCTTGCGCAGGTTTTTCCTGCTTA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGATTTCCTGCTCTGTCATCTTTTGCTCCTTGTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAAAATATCGTATTTGGCGCGTCGCCACTTCACGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTACCGTTATCGATTGCGCCCATTCCGCGCTGAAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATCCGACACATCACCCGCCCCGGAATTATTATCCCCAGCC # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.20,-8.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 17 74948-75111 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV816529.1 Neisseria sp. HMSC066B07 Scaffold565, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 74948 33 100.0 33 ................................. GATTTCCTGCTCTGTCATCTTTTGCTCCTTGTT 75014 33 100.0 32 ................................. AAAATATCGTATTTGGCGCGTCGCCACTTCAC 75079 33 97.0 0 G................................ | ========== ====== ====== ====== ================================= ================================= ================== 3 33 99.0 33 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : TGAAACGCTGTTGGGTTTAGAACTTTGTAAAGACTTGAGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTTACCGCTTCTTGCGCAGGTTTTTCCTGCTTAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAGCGTATTATCATCAAACCCCTTAAACAATTAGGAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTGCTGTGCATCTGCGGACGGTTCGTCGGTGTCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC # Right flank : CTACCGTTATCGATTGCGCCCATTCCGCGCTGAAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATCCGACACATCACCCGCCCCGGAATTATTATCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACCTTTGCCTAAGCGTTTGTCTTGGAGTTGCTGGGCCCAGTCGCCTTCGGGCGGCTGTGTGTTGAAACTTTGACAATCGTGCCACATGTAGGGTTAATTGCCAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATAATCCCCAAACAATCCAACATCATTTAAATAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATAGTTGGTGTGTCAAATCGAATCATATTTGAT # Questionable array : NO Score: 5.31 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 18 75275-75643 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV816529.1 Neisseria sp. HMSC066B07 Scaffold565, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================== ================== 75275 34 94.1 32 NN................................ TCCGACACATCACCCGCCCCGGAATTATTATC 75341 34 100.0 34 .................................. CCTTTGCCTAAGCGTTTGTCTTGGAGTTGCTGGG 75409 34 94.1 34 .....T...........................T TTGACAATCGTGCCACATGTAGGGTTAATTGCCA 75477 34 97.1 33 G................................. ATAATCCCCAAACAATCCAACATCATTTAAATA 75544 34 97.1 32 A................................. ATAGTTGGTGTGTCAAATCGAATCATATTTGA 75610 34 94.1 0 T................................N | ========== ====== ====== ====== ================================== ================================== ================== 6 34 96.1 33 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACA # Left flank : GTTGAAACCTGCTGTGCATCTGCGGACGGTTCGTCGGTGTCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGATTTCCTGCTCTGTCATCTTTTGCTCCTTGTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAAAATATCGTATTTGGCGCGTCGCCACTTCACGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTACCGTTATCGATTGCGCCCATTCCGCGCTGAAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATCCTTATAAAGCCAAAAAGACCGAAACAGCAGCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACATGAATCCGATCAGGATTGAACCTAAACCAATACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAAATACGCCGTCCCTGCGAACTGGGTAGGACGCACCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCCATCTGCATTGATAATACAGCTAGTAATTTATGCCAGCCGCCTTCGCGGCGGCTGTGTGTTGAAACCCTGCGTTGATGATACTCAGGAAAGACATTGTCGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATATATTTCCTTTCGGAGAGAAAACATGTCAGATGAC # Questionable array : NO Score: 5.75 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 19 75741-76173 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV816529.1 Neisseria sp. HMSC066B07 Scaffold565, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 75741 33 90.9 33 NN...........G................... AATCCTTATAAAGCCAAAAAGACCGAAACAGCA 75807 33 97.0 32 G................................ ATGAATCCGATCAGGATTGAACCTAAACCAAT 75872 33 100.0 34 ................................. AAATACGCCGTCCCTGCGAACTGGGTAGGACGCA 75939 33 97.0 33 C................................ CCATCTGCATTGATAATACAGCTAGTAATTTAT 76005 33 93.9 34 G............G................... CCTGCGTTGATGATACTCAGGAAAGACATTGTCG C [76019] 76073 33 93.9 35 T............G................... ATATATTTCCTTTCGGAGAGAAAACATGTCAGATG 76141 33 87.9 0 ........T....G..TA............... | ========== ====== ====== ====== ================================= =================================== ================== 7 33 94.4 34 ACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATCCGACACATCACCCGCCCCGGAATTATTATCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACCTTTGCCTAAGCGTTTGTCTTGGAGTTGCTGGGCCCAGTCGCCTTCGGGCGGCTGTGTGTTGAAACTTTGACAATCGTGCCACATGTAGGGTTAATTGCCAGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATAATCCCCAAACAATCCAACATCATTTAAATAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATAGTTGGTGTGTCAAATCGAATCATATTTGATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : CTCTGCCACCGTATCTCATGTCTGAGTAAGGAAGAGGGGCTGTATGTTCGGATATCGTCCAAGCAGACCGCTCTTCTTTTGATCCTTCGCTTTCCGAAGCTTTAGTGAAAGCTGTGAAGGATATTAGAAGCAAGTTATAAAGGGTAATCAATAACAATGCCGTCTGAAAAAGTTTCAGACGGCATTTTTTATATTTACATATTAAATTTAATATCATATTATCATTGCATGATATCAGTTTGAATTTTTTTAGAATTTCAATATGAAACCCCTAATTTACTATGCTCATTTTGCCCAAGATGAACTCGGCAATCTCTTGCCTTACGAACATTGGCAAACCTTGCAAAGTCATTCGGTAAATGTTGGGGAAATGGCGGCGGAGTTTGCGCGAGTATTTGGGGCACAGGAAATTGCCTGCCAGATGGGAAAGTTGCATGACTTAGGGAAATATTCGGAAGCCTTTAATTATCGATTGTATGGCGATCCTTCAGGTGATCATG # Questionable array : NO Score: 3.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.72, 5:-1.5, 6:0.25, 7:0.01, 8:1, 9:0.34, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.90,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //